Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3408
  Reference Plasmid   MGYG000304246__MGYG000304246_24
  Reference Plasmid Size   24498
  Reference Plasmid GC Content   0.47
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0142415 BHJGLJCE_00014 14292 4 Vaginal 0.40 protein_coding missense_variant MODERATE 218G>A Gly73Glu
M0142416 BHJGLJCE_00014 14293 3 Vaginal 0.30 protein_coding synonymous_variant LOW 219G>A Gly73Gly
M0142417 BHJGLJCE_00014 14305 4 Vaginal 0.40 protein_coding synonymous_variant LOW 231A>G Leu77Leu
M0142418 BHJGLJCE_00014 14455 3 Vaginal 0.30 protein_coding synonymous_variant LOW 381A>G Thr127Thr
M0142419 BHJGLJCE_00014 14585 4 Vaginal 0.40 protein_coding synonymous_variant LOW 511T>C Leu171Leu
M0142420 BHJGLJCE_00014 14679 4 Vaginal 0.40 protein_coding missense_variant MODERATE 605A>G Gln202Arg
M0142421 BHJGLJCE_00014 14687 4 Vaginal 0.40 protein_coding missense_variant MODERATE 613A>C Lys205Gln
M0142422 BHJGLJCE_00014 14706 3 Vaginal 0.30 protein_coding missense_variant MODERATE 632C>T Ala211Val
M0142423 BHJGLJCE_00014 14788 4 Vaginal 0.40 protein_coding synonymous_variant LOW 714T>C Thr238Thr
M0142424 BHJGLJCE_00014 14796 3 Vaginal 0.30 protein_coding missense_variant MODERATE 722C>G Pro241Arg
M0142425 BHJGLJCE_00014 14800 4 Vaginal 0.40 protein_coding synonymous_variant LOW 726G>A Ser242Ser
M0142426 BHJGLJCE_00014 14818 4 Vaginal 0.40 protein_coding synonymous_variant LOW 744A>G Lys248Lys
M0142427 BHJGLJCE_00014 14827 4 Vaginal 0.40 protein_coding synonymous_variant LOW 753T>A Thr251Thr
M0142428 BHJGLJCE_00015 15312 4 Vaginal 0.40 protein_coding synonymous_variant LOW 393T>G Leu131Leu
M0142429 BHJGLJCE_00015 15815 3 Vaginal 0.30 protein_coding missense_variant MODERATE 896A>G Glu299Gly
M0142430 BHJGLJCE_00015 16140 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1221T>C Asn407Asn
M0142431 BHJGLJCE_00015 16143 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1224G>T Gly408Gly
M0142432 BHJGLJCE_00015 16175 4 Vaginal 0.40 protein_coding missense_variant MODERATE 1256T>C Val419Ala
M0142433 BHJGLJCE_00015 16251 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1332A>T Ala444Ala
M0142434 BHJGLJCE_00015 16254 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1335C>T Pro445Pro
M0142435 BHJGLJCE_00015 16395 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1476G>A Gln492Gln
M0142436 BHJGLJCE_00015 16512 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1593C>T Tyr531Tyr
M0142437 BHJGLJCE_00016 16945 3 Vaginal 0.30 protein_coding missense_variant MODERATE 122C>T Thr41Ile
M0142438 BHJGLJCE_00016 16967 3 Vaginal 0.30 protein_coding synonymous_variant LOW 144G>A Ala48Ala
M0142439 BHJGLJCE_00017 17085 4 Vaginal 0.40 protein_coding synonymous_variant LOW 54A>G Arg18Arg
M0142440 BHJGLJCE_00017 17131 4 Vaginal 0.40 protein_coding missense_variant MODERATE 100A>G Ser34Gly
M0142441 BHJGLJCE_00017 17138 3 Vaginal 0.30 protein_coding missense_variant MODERATE 107G>A Arg36His
M0142442 BHJGLJCE_00017 17139 3 Vaginal 0.30 protein_coding synonymous_variant LOW 108C>T Arg36Arg
M0142443 BHJGLJCE_00017 17509 3 Vaginal 0.30 protein_coding missense_variant MODERATE 478A>G Met160Val
M0142444 BHJGLJCE_00017 17631 3 Vaginal 0.30 protein_coding synonymous_variant LOW 600T>C Asp200Asp
M0142445 BHJGLJCE_00017 17670 3 Vaginal 0.30 protein_coding synonymous_variant LOW 639T>C Asp213Asp
M0142446 BHJGLJCE_00017 17706 3 Vaginal 0.30 protein_coding synonymous_variant LOW 675C>T Ile225Ile
M0142447 BHJGLJCE_00017 17841 3 Vaginal 0.30 protein_coding synonymous_variant LOW 810T>C Tyr270Tyr
M0142448 BHJGLJCE_00017 17964 3 Vaginal 0.30 protein_coding synonymous_variant LOW 933A>G Glu311Glu
M0142449 BHJGLJCE_00017 18057 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1026G>T Gly342Gly
M0142450 BHJGLJCE_00017 18147 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1116G>A Gln372Gln
M0142451 BHJGLJCE_00017 18231 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1200T>C Leu400Leu
M0142452 BHJGLJCE_00018 18697 3 Vaginal 0.30 protein_coding synonymous_variant LOW 324G>T Pro108Pro
M0142453 BHJGLJCE_00018 19076 3 Vaginal 0.30 protein_coding missense_variant MODERATE 703A>C Asn235His
M0142454 BHJGLJCE_00018 19079 3 Vaginal 0.30 protein_coding missense_variant MODERATE 706A>G Ile236Val
M0142455 BHJGLJCE_00018 19180 3 Vaginal 0.30 protein_coding synonymous_variant LOW 807G>T Thr269Thr
M0142456 BHJGLJCE_00018 19228 3 Vaginal 0.30 protein_coding synonymous_variant LOW 855C>T Ala285Ala
M0142457 BHJGLJCE_00018 19373 3 Vaginal 0.30 protein_coding missense_variant MODERATE 1000G>C Ala334Pro
M0142458 BHJGLJCE_00019 19692 4 Vaginal 0.40 protein_coding synonymous_variant LOW 72A>T Ile24Ile
M0142459 BHJGLJCE_00019 19779 4 Vaginal 0.40 protein_coding synonymous_variant LOW 159A>G Glu53Glu
M0142460 BHJGLJCE_00019 19792 3 Vaginal 0.30 protein_coding missense_variant MODERATE 172A>G Thr58Ala
M0142461 BHJGLJCE_00019 19886 4 Vaginal 0.40 protein_coding missense_variant MODERATE 266G>A Ser89Asn
M0142462 BHJGLJCE_00019 19908 3 Vaginal 0.30 protein_coding synonymous_variant LOW 288C>T Pro96Pro
M0142463 BHJGLJCE_00019 20045 4 Vaginal 0.40 protein_coding missense_variant MODERATE 425T>C Val142Ala
M0142464 BHJGLJCE_00019 20176 5 Vaginal 0.50 protein_coding missense_variant MODERATE 556A>G Ile186Val
M0142465 BHJGLJCE_00019 20211 4 Vaginal 0.40 protein_coding synonymous_variant LOW 591A>G Gly197Gly
M0142466 BHJGLJCE_00020 20397 4 Vaginal 0.40 protein_coding upstream_gene_variant MODIFIER -17A>T None
M0142467 BHJGLJCE_00020 20400 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -14A>G None
M0142468 BHJGLJCE_00020 20563 4 Vaginal 0.40 protein_coding synonymous_variant LOW 150A>G Val50Val
M0142469 BHJGLJCE_00020 20649 4 Vaginal 0.40 protein_coding missense_variant MODERATE 236T>G Leu79Arg
M0142470 BHJGLJCE_00020 20815 4 Vaginal 0.40 protein_coding synonymous_variant LOW 402A>G Arg134Arg
M0142471 BHJGLJCE_00020 20820 3 Vaginal 0.30 protein_coding missense_variant MODERATE 407C>T Thr136Ile
M0142472 BHJGLJCE_00020 20821 4 Vaginal 0.40 protein_coding synonymous_variant LOW 408A>G Thr136Thr
M0142473 BHJGLJCE_00020 20893 3 Vaginal 0.30 protein_coding synonymous_variant LOW 480A>G Lys160Lys
M0142474 BHJGLJCE_00020 20920 3 Vaginal 0.30 protein_coding synonymous_variant LOW 507C>T Ala169Ala
M0142475 BHJGLJCE_00020 20926 5 Vaginal 0.50 protein_coding synonymous_variant LOW 513T>C Gly171Gly
M0142476 BHJGLJCE_00020 21010 4 Vaginal 0.40 protein_coding synonymous_variant LOW 597T>C Ala199Ala
M0142477 BHJGLJCE_00020 21029 3 Vaginal 0.30 protein_coding missense_variant MODERATE 616T>C Tyr206His
M0142478 BHJGLJCE_00020 21154 3 Vaginal 0.30 protein_coding synonymous_variant LOW 741A>G Thr247Thr
M0142479 BHJGLJCE_00020 21170 3 Vaginal 0.30 protein_coding synonymous_variant LOW 757T>C Leu253Leu
M0142480 BHJGLJCE_00021 21214 4 Vaginal 0.40 protein_coding upstream_gene_variant MODIFIER -11T>A None
M0142481 BHJGLJCE_00021 21266 4 Vaginal 0.40 protein_coding synonymous_variant LOW 42G>A Leu14Leu
M0142482 BHJGLJCE_00021 21317 4 Vaginal 0.40 protein_coding synonymous_variant LOW 93A>G Val31Val
M0142483 BHJGLJCE_00021 21353 4 Vaginal 0.40 protein_coding synonymous_variant LOW 129A>G Gln43Gln
M0142484 BHJGLJCE_00021 21360 3 Vaginal 0.30 protein_coding missense_variant MODERATE 136G>A Val46Met
M0142485 BHJGLJCE_00021 21368 3 Vaginal 0.30 protein_coding synonymous_variant LOW 144T>G Ala48Ala
M0142486 BHJGLJCE_00021 21425 3 Vaginal 0.30 protein_coding synonymous_variant LOW 201A>G Ala67Ala
M0142487 BHJGLJCE_00021 21591 3 Vaginal 0.30 protein_coding missense_variant MODERATE 367C>G Gln123Glu
M0142488 BHJGLJCE_00021 21602 3 Vaginal 0.30 protein_coding synonymous_variant LOW 378A>T Gly126Gly
M0142489 BHJGLJCE_00023 21730 5 Vaginal 0.50 protein_coding upstream_gene_variant MODIFIER -1784T>A None
M0142490 BHJGLJCE_00022 21973 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1107A>G Gln369Gln
M0142491 BHJGLJCE_00022 22002 4 Vaginal 0.40 protein_coding missense_variant MODERATE 1078A>G Thr360Ala
M0142492 BHJGLJCE_00022 22409 4 Vaginal 0.40 protein_coding missense_variant MODERATE 671T>C Val224Ala
M0142493 BHJGLJCE_00022 22606 4 Vaginal 0.40 protein_coding synonymous_variant LOW 474A>G Lys158Lys
M0142494 BHJGLJCE_00022 22687 4 Vaginal 0.40 protein_coding synonymous_variant LOW 393A>G Thr131Thr
M0142495 BHJGLJCE_00022 22830 4 Vaginal 0.40 protein_coding missense_variant MODERATE 250G>A Ala84Thr
M0142496 BHJGLJCE_00019 20217 4 Vaginal 0.40 protein_coding synonymous_variant LOW 597C>T Asp199Asp
M0142497 BHJGLJCE_00020 20381 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -33T>G None
M0142498 BHJGLJCE_00022 21837 3 Vaginal 0.30 protein_coding missense_variant MODERATE 1243C>A Leu415Ile
M0142499 BHJGLJCE_00022 22944 3 Vaginal 0.30 protein_coding missense_variant MODERATE 136C>G Gln46Glu
M0142500 BHJGLJCE_00022 23047 3 Vaginal 0.30 protein_coding synonymous_variant LOW 33A>G Gln11Gln
M0142501 BHJGLJCE_00022 23221 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -142C>A None
M0142502 BHJGLJCE_00022 23276 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -197T>C None
M0142503 BHJGLJCE_00022 23396 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -317A>G None
M0142504 BHJGLJCE_00022 23506 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -427T>A None
M0142505 BHJGLJCE_00001 131 4 Vaginal 0.40 protein_coding upstream_gene_variant MODIFIER -144A>G None
M0142506 BHJGLJCE_00001 133 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -142A>G None
M0142507 BHJGLJCE_00001 166 4 Vaginal 0.40 protein_coding upstream_gene_variant MODIFIER -109T>G None
M0142508 BHJGLJCE_00001 208 4 Vaginal 0.40 protein_coding upstream_gene_variant MODIFIER -67T>A None
M0142509 BHJGLJCE_00001 622 3 Vaginal 0.30 protein_coding synonymous_variant LOW 348C>T Arg116Arg
M0142510 BHJGLJCE_00001 739 3 Vaginal 0.30 protein_coding synonymous_variant LOW 465C>A Val155Val
M0142511 BHJGLJCE_00001 805 4 Vaginal 0.40 protein_coding synonymous_variant LOW 531T>C Arg177Arg
M0142512 BHJGLJCE_00001 826 3 Vaginal 0.30 protein_coding synonymous_variant LOW 552T>C Ala184Ala
M0142513 BHJGLJCE_00001 830 5 Vaginal 0.50 protein_coding missense_variant MODERATE 556A>G Ile186Val
M0142514 BHJGLJCE_00001 850 4 Vaginal 0.40 protein_coding synonymous_variant LOW 576A>G Thr192Thr
M0142515 BHJGLJCE_00001 871 5 Vaginal 0.50 protein_coding synonymous_variant LOW 597T>C Ala199Ala
M0142516 BHJGLJCE_00001 1033 4 Vaginal 0.40 protein_coding synonymous_variant LOW 759A>G Gln253Gln
M0142517 BHJGLJCE_00001 1061 5 Vaginal 0.50 protein_coding missense_variant MODERATE 787A>G Asn263Asp
M0142518 BHJGLJCE_00001 1276 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1002A>G Lys334Lys
M0142519 BHJGLJCE_00001 1381 5 Vaginal 0.50 protein_coding synonymous_variant LOW 1107T>A Gly369Gly
M0142520 BHJGLJCE_00002 2119 5 Vaginal 0.50 protein_coding missense_variant MODERATE 283A>G Ser95Gly
M0142521 BHJGLJCE_00002 2325 4 Vaginal 0.40 protein_coding synonymous_variant LOW 489T>C Asp163Asp
M0142522 BHJGLJCE_00002 2347 5 Vaginal 0.50 protein_coding missense_variant MODERATE 511A>C Met171Leu
M0142523 BHJGLJCE_00002 2532 4 Vaginal 0.40 protein_coding synonymous_variant LOW 696G>A Gly232Gly
M0142524 BHJGLJCE_00002 2544 3 Vaginal 0.30 protein_coding synonymous_variant LOW 708C>T Asn236Asn
M0142525 BHJGLJCE_00002 2558 4 Vaginal 0.40 protein_coding missense_variant MODERATE 722G>A Gly241Asp
M0142526 BHJGLJCE_00003 2567 5 Vaginal 0.50 protein_coding upstream_gene_variant MODIFIER -12A>G None
M0142527 BHJGLJCE_00003 2640 3 Vaginal 0.30 protein_coding missense_variant MODERATE 62C>T Ala21Val
M0142528 BHJGLJCE_00003 2830 3 Vaginal 0.30 protein_coding synonymous_variant LOW 252C>T Ser84Ser
M0142529 BHJGLJCE_00003 2903 3 Vaginal 0.30 protein_coding synonymous_variant LOW 325C>T Leu109Leu
M0142530 BHJGLJCE_00003 2920 3 Vaginal 0.30 protein_coding synonymous_variant LOW 342A>C Ser114Ser
M0142531 BHJGLJCE_00003 2952 3 Vaginal 0.30 protein_coding missense_variant MODERATE 374C>T Ser125Phe
M0142532 BHJGLJCE_00003 3040 4 Vaginal 0.40 protein_coding synonymous_variant LOW 462A>G Ser154Ser
M0142533 BHJGLJCE_00003 3076 4 Vaginal 0.40 protein_coding synonymous_variant LOW 498A>G Ser166Ser
M0142534 BHJGLJCE_00003 3124 4 Vaginal 0.40 protein_coding synonymous_variant LOW 546G>A Glu182Glu
M0142535 BHJGLJCE_00003 3229 4 Vaginal 0.40 protein_coding synonymous_variant LOW 651A>G Thr217Thr
M0142536 BHJGLJCE_00004 3618 5 Vaginal 0.50 protein_coding synonymous_variant LOW 348A>G Lys116Lys
M0142537 BHJGLJCE_00004 3655 4 Vaginal 0.40 protein_coding synonymous_variant LOW 385T>C Leu129Leu
M0142538 BHJGLJCE_00005 4093 5 Vaginal 0.50 protein_coding synonymous_variant LOW 138T>C Gly46Gly
M0142539 BHJGLJCE_00005 4264 5 Vaginal 0.50 protein_coding synonymous_variant LOW 309T>C Gly103Gly
M0142540 BHJGLJCE_00005 4396 5 Vaginal 0.50 protein_coding synonymous_variant LOW 441A>G Glu147Glu
M0142541 BHJGLJCE_00005 4399 5 Vaginal 0.50 protein_coding synonymous_variant LOW 444G>A Thr148Thr
M0142542 BHJGLJCE_00005 4714 5 Vaginal 0.50 protein_coding synonymous_variant LOW 759A>G Leu253Leu
M0142543 BHJGLJCE_00005 4789 4 Vaginal 0.40 protein_coding synonymous_variant LOW 834A>C Gly278Gly
M0142544 BHJGLJCE_00005 4981 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1026C>T Ala342Ala
M0142545 BHJGLJCE_00005 5025 4 Vaginal 0.40 protein_coding missense_variant MODERATE 1070T>C Val357Ala
M0142546 BHJGLJCE_00005 5131 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1176T>A Ala392Ala
M0142547 BHJGLJCE_00005 5137 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1182C>T Ala394Ala
M0142548 BHJGLJCE_00005 5146 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1191C>T Gly397Gly
M0142549 BHJGLJCE_00005 5215 3 Vaginal 0.30 protein_coding missense_variant MODERATE 1260A>G Ile420Met
M0142550 BHJGLJCE_00005 5241 3 Vaginal 0.30 protein_coding missense_variant MODERATE 1286C>A Thr429Lys
M0142551 BHJGLJCE_00006 5547 4 Vaginal 0.40 protein_coding synonymous_variant LOW 216G>A Ala72Ala
M0142552 BHJGLJCE_00007 5994 4 Vaginal 0.40 protein_coding missense_variant MODERATE 62T>G Val21Gly
M0142553 BHJGLJCE_00007 5995 4 Vaginal 0.40 protein_coding synonymous_variant LOW 63A>G Val21Val
M0142554 BHJGLJCE_00007 6015 3 Vaginal 0.30 protein_coding missense_variant MODERATE 83G>A Arg28Lys
M0142555 BHJGLJCE_00007 6268 4 Vaginal 0.40 protein_coding synonymous_variant LOW 336T>A Gly112Gly
M0142556 BHJGLJCE_00008 6467 4 Vaginal 0.40 protein_coding missense_variant MODERATE 54A>T Glu18Asp
M0142557 BHJGLJCE_00008 6469 3 Vaginal 0.30 protein_coding missense_variant MODERATE 56C>A Ala19Asp
M0142558 BHJGLJCE_00008 6521 3 Vaginal 0.30 protein_coding synonymous_variant LOW 108C>T Asn36Asn
M0142559 BHJGLJCE_00008 6563 3 Vaginal 0.30 protein_coding synonymous_variant LOW 150G>A Glu50Glu
M0142560 BHJGLJCE_00008 6641 3 Vaginal 0.30 protein_coding synonymous_variant LOW 228A>T Pro76Pro
M0142561 BHJGLJCE_00008 6701 3 Vaginal 0.30 protein_coding synonymous_variant LOW 288G>T Gly96Gly
M0142562 BHJGLJCE_00008 6706 3 Vaginal 0.30 protein_coding missense_variant MODERATE 293G>A Gly98Asp
M0142563 BHJGLJCE_00008 6714 3 Vaginal 0.30 protein_coding missense_variant MODERATE 301C>A Gln101Lys
M0142564 BHJGLJCE_00008 6806 3 Vaginal 0.30 protein_coding synonymous_variant LOW 393T>C Arg131Arg
M0142565 BHJGLJCE_00008 7022 3 Vaginal 0.30 protein_coding synonymous_variant LOW 609T>C Gly203Gly
M0142566 BHJGLJCE_00008 7057 3 Vaginal 0.30 protein_coding missense_variant MODERATE 644A>G Asp215Gly
M0142567 BHJGLJCE_00008 7064 3 Vaginal 0.30 protein_coding missense_variant MODERATE 651A>C Arg217Ser
M0142568 BHJGLJCE_00008 7499 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1086A>G Leu362Leu
M0142569 BHJGLJCE_00008 7686 3 Vaginal 0.30 protein_coding missense_variant MODERATE 1273A>G Thr425Ala
M0142570 BHJGLJCE_00008 7754 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1341G>A Arg447Arg
M0142571 BHJGLJCE_00008 7775 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1362C>T Val454Val
M0142572 BHJGLJCE_00009 7957 3 Vaginal 0.30 protein_coding missense_variant MODERATE 125T>C Leu42Pro
M0142573 BHJGLJCE_00009 8074 3 Vaginal 0.30 protein_coding missense_variant MODERATE 242A>G Asn81Ser
M0142574 BHJGLJCE_00009 8180 3 Vaginal 0.30 protein_coding synonymous_variant LOW 348A>G Arg116Arg
M0142575 BHJGLJCE_00009 8444 4 Vaginal 0.40 protein_coding synonymous_variant LOW 612T>C Ala204Ala
M0142576 BHJGLJCE_00009 8545 3 Vaginal 0.30 protein_coding missense_variant MODERATE 713T>A Phe238Tyr
M0142577 BHJGLJCE_00009 8552 3 Vaginal 0.30 protein_coding synonymous_variant LOW 720A>G Leu240Leu
M0142578 BHJGLJCE_00010 8905 4 Vaginal 0.40 protein_coding synonymous_variant LOW 133T>C Leu45Leu
M0142579 BHJGLJCE_00010 9018 4 Vaginal 0.40 protein_coding synonymous_variant LOW 246A>G Lys82Lys
M0142580 BHJGLJCE_00010 9075 3 Vaginal 0.30 protein_coding synonymous_variant LOW 303A>G Ala101Ala
M0142581 BHJGLJCE_00010 9096 4 Vaginal 0.40 protein_coding synonymous_variant LOW 324G>A Lys108Lys
M0142582 BHJGLJCE_00010 9100 3 Vaginal 0.30 protein_coding missense_variant MODERATE 328A>G Ile110Val
M0142583 BHJGLJCE_00010 9112 4 Vaginal 0.40 protein_coding missense_variant MODERATE 340T>G Phe114Val
M0142584 BHJGLJCE_00010 9138 3 Vaginal 0.30 protein_coding synonymous_variant LOW 366T>C Arg122Arg
M0142585 BHJGLJCE_00010 9351 3 Vaginal 0.30 protein_coding synonymous_variant LOW 579C>T Ile193Ile
M0142586 BHJGLJCE_00010 9544 3 Vaginal 0.30 protein_coding synonymous_variant LOW 772T>C Leu258Leu
M0142587 BHJGLJCE_00010 9846 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1074A>G Arg358Arg
M0142588 BHJGLJCE_00010 9882 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1110T>C Val370Val
M0142589 BHJGLJCE_00010 9885 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1113T>C Asp371Asp
M0142590 BHJGLJCE_00010 9948 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1176A>G Glu392Glu
M0142591 BHJGLJCE_00010 10251 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1479T>A Ala493Ala
M0142592 BHJGLJCE_00010 10266 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1494G>A Ser498Ser
M0142593 BHJGLJCE_00010 10320 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1548T>C Asp516Asp
M0142594 BHJGLJCE_00010 10380 4 Vaginal 0.40 protein_coding synonymous_variant LOW 1608T>C Gly536Gly
M0142595 BHJGLJCE_00014 14356 3 Vaginal 0.30 protein_coding synonymous_variant LOW 282G>A Gln94Gln
M0142596 BHJGLJCE_00014 14362 3 Vaginal 0.30 protein_coding synonymous_variant LOW 288A>G Glu96Glu
M0142597 BHJGLJCE_00015 15246 3 Vaginal 0.30 protein_coding synonymous_variant LOW 327T>A Ile109Ile
M0142598 BHJGLJCE_00015 15698 3 Vaginal 0.30 protein_coding missense_variant MODERATE 779T>A Met260Lys
M0142599 BHJGLJCE_00015 15712 3 Vaginal 0.30 protein_coding missense_variant MODERATE 793A>G Ile265Val
M0142600 BHJGLJCE_00018 18451 3 Vaginal 0.30 protein_coding synonymous_variant LOW 78C>T Arg26Arg
M0142601 BHJGLJCE_00001 85 3 Vaginal 0.30 protein_coding upstream_gene_variant MODIFIER -190T>C None
M0142602 BHJGLJCE_00001 1579 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1305G>C Gly435Gly
M0142603 BHJGLJCE_00001 1738 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1464G>T Arg488Arg
M0142604 BHJGLJCE_00002 1908 3 Vaginal 0.30 protein_coding synonymous_variant LOW 72T>A Arg24Arg
M0142605 BHJGLJCE_00002 2037 4 Vaginal 0.40 protein_coding synonymous_variant LOW 201A>C Thr67Thr
M0142606 BHJGLJCE_00005 4513 3 Vaginal 0.30 protein_coding synonymous_variant LOW 558C>T Ala186Ala
M0142607 BHJGLJCE_00005 4672 3 Vaginal 0.30 protein_coding synonymous_variant LOW 717G>T Pro239Pro
M0142608 BHJGLJCE_00005 4825 4 Vaginal 0.40 protein_coding synonymous_variant LOW 870A>G Gly290Gly
M0142609 BHJGLJCE_00006 5868 3 Vaginal 0.30 protein_coding synonymous_variant LOW 537C>T Asn179Asn
M0142610 BHJGLJCE_00008 6875 3 Vaginal 0.30 protein_coding synonymous_variant LOW 462A>C Leu154Leu
M0142611 BHJGLJCE_00010 9033 3 Vaginal 0.30 protein_coding synonymous_variant LOW 261C>A Thr87Thr
M0142612 BHJGLJCE_00010 9780 3 Vaginal 0.30 protein_coding synonymous_variant LOW 1008C>T His336His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BHJGLJCE_00013 QUB53548.1|GH0 92.6 4.68e-235 1 350 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term