Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C274
  Reference Plasmid   NC_004768.1
  Reference Plasmid Size   10224
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0150711 GOODKAOJ_00001 180 63 Gut 0.67 protein_coding synonymous_variant LOW 153T>C Arg51Arg
M0150712 GOODKAOJ_00002 752 26 Gut 0.28 protein_coding synonymous_variant LOW 225G>A Gly75Gly
M0150713 GOODKAOJ_00002 876 27 Gut 0.29 protein_coding missense_variant MODERATE 349A>G Ile117Val
M0150714 GOODKAOJ_00003 1555 10 Gut 0.11 protein_coding synonymous_variant LOW 444C>T Leu148Leu
M0150715 GOODKAOJ_00003 1759 88 Gut 0.94 protein_coding synonymous_variant LOW 648T>C Val216Val
M0150716 GOODKAOJ_00003 1779 28 Gut 0.30 protein_coding missense_variant MODERATE 668T>C Met223Thr
M0150717 GOODKAOJ_00003 1797 84 Gut 0.89 protein_coding missense_variant MODERATE 686C>T Thr229Met
M0150718 GOODKAOJ_00004 2034 11 Gut 0.12 protein_coding synonymous_variant LOW 138C>A Thr46Thr
M0150719 GOODKAOJ_00006 2995 64 Gut 0.68 protein_coding synonymous_variant LOW 102A>C Gly34Gly
M0150720 GOODKAOJ_00006 3049 74 Gut 0.79 protein_coding synonymous_variant LOW 48C>A Arg16Arg
M0150721 GOODKAOJ_00007 3106 74 Gut 0.79 protein_coding missense_variant MODERATE 587A>G Glu196Gly
M0150722 GOODKAOJ_00007 3108 64 Gut 0.68 protein_coding synonymous_variant LOW 585G>A Lys195Lys
M0150723 GOODKAOJ_00007 3109 74 Gut 0.79 protein_coding missense_variant MODERATE 584A>G Lys195Arg
M0150724 GOODKAOJ_00007 3114 64 Gut 0.68 protein_coding synonymous_variant LOW 579G>A Glu193Glu
M0150725 GOODKAOJ_00007 3174 74 Gut 0.79 protein_coding synonymous_variant LOW 519A>G Lys173Lys
M0150726 GOODKAOJ_00007 3180 74 Gut 0.79 protein_coding synonymous_variant LOW 513T>C Asp171Asp
M0150727 GOODKAOJ_00007 3186 74 Gut 0.79 protein_coding missense_variant MODERATE 507G>T Arg169Ser
M0150728 GOODKAOJ_00007 3188 74 Gut 0.79 protein_coding synonymous_variant LOW 505A>C Arg169Arg
M0150729 GOODKAOJ_00007 3198 74 Gut 0.79 protein_coding synonymous_variant LOW 495A>G Glu165Glu
M0150730 GOODKAOJ_00007 3219 63 Gut 0.67 protein_coding synonymous_variant LOW 474T>G Gly158Gly
M0150731 GOODKAOJ_00007 3300 73 Gut 0.78 protein_coding synonymous_variant LOW 393A>G Lys131Lys
M0150732 GOODKAOJ_00007 3393 72 Gut 0.77 protein_coding synonymous_variant LOW 300A>G Lys100Lys
M0150733 GOODKAOJ_00007 3400 10 Gut 0.11 protein_coding missense_variant MODERATE 293C>T Ala98Val
M0150734 GOODKAOJ_00007 3455 51 Gut 0.54 protein_coding missense_variant MODERATE 238A>G Asn80Asp
M0150735 GOODKAOJ_00007 3621 69 Gut 0.73 protein_coding synonymous_variant LOW 72A>G Ala24Ala
M0150736 GOODKAOJ_00007 3639 69 Gut 0.73 protein_coding synonymous_variant LOW 54A>G Ser18Ser
M0150737 GOODKAOJ_00007 3676 44 Gut 0.47 protein_coding missense_variant MODERATE 17T>C Ile6Thr
M0150738 GOODKAOJ_00005 3740 41 Gut 0.44 protein_coding upstream_gene_variant MODIFIER -1234C>T None
M0150739 GOODKAOJ_00005 3741 64 Gut 0.68 protein_coding upstream_gene_variant MODIFIER -1235G>A None
M0150740 GOODKAOJ_00005 3747 64 Gut 0.68 protein_coding upstream_gene_variant MODIFIER -1241C>T None
M0150741 GOODKAOJ_00005 3762 52 Gut 0.55 protein_coding upstream_gene_variant MODIFIER -1256C>T None
M0150742 GOODKAOJ_00008 3799 65 Gut 0.69 protein_coding synonymous_variant LOW 4074A>G Ala1358Ala
M0150743 GOODKAOJ_00008 3826 45 Gut 0.48 protein_coding synonymous_variant LOW 4047G>A Gln1349Gln
M0150744 GOODKAOJ_00008 3831 65 Gut 0.69 protein_coding missense_variant MODERATE 4042A>T Ile1348Phe
M0150745 GOODKAOJ_00008 3835 65 Gut 0.69 protein_coding missense_variant MODERATE 4038A>C Glu1346Asp
M0150746 GOODKAOJ_00008 3935 54 Gut 0.57 protein_coding missense_variant MODERATE 3938G>A Arg1313His
M0150747 GOODKAOJ_00008 3945 69 Gut 0.73 protein_coding missense_variant MODERATE 3928T>G Ser1310Ala
M0150748 GOODKAOJ_00008 3981 51 Gut 0.54 protein_coding missense_variant MODERATE 3892A>G Lys1298Glu
M0150749 GOODKAOJ_00008 4014 54 Gut 0.57 protein_coding missense_variant MODERATE 3859G>A Val1287Ile
M0150750 GOODKAOJ_00008 4048 64 Gut 0.68 protein_coding synonymous_variant LOW 3825A>G Glu1275Glu
M0150751 GOODKAOJ_00008 4050 54 Gut 0.57 protein_coding missense_variant MODERATE 3823G>A Glu1275Lys
M0150752 GOODKAOJ_00008 4346 65 Gut 0.69 protein_coding missense_variant MODERATE 3527C>A Ala1176Asp
M0150753 GOODKAOJ_00008 4347 65 Gut 0.69 protein_coding missense_variant MODERATE 3526G>A Ala1176Thr
M0150754 GOODKAOJ_00008 4461 49 Gut 0.52 protein_coding missense_variant MODERATE 3412G>A Ala1138Thr
M0150755 GOODKAOJ_00008 4737 60 Gut 0.64 protein_coding missense_variant MODERATE 3136G>A Ala1046Thr
M0150756 GOODKAOJ_00008 4741 62 Gut 0.66 protein_coding synonymous_variant LOW 3132A>G Glu1044Glu
M0150757 GOODKAOJ_00008 4776 60 Gut 0.64 protein_coding missense_variant MODERATE 3097G>A Gly1033Ser
M0150758 GOODKAOJ_00008 4888 50 Gut 0.53 protein_coding synonymous_variant LOW 2985C>T Leu995Leu
M0150759 GOODKAOJ_00008 4899 59 Gut 0.63 protein_coding missense_variant MODERATE 2974G>A Ala992Thr
M0150760 GOODKAOJ_00008 4901 59 Gut 0.63 protein_coding missense_variant MODERATE 2972C>A Ala991Glu
M0150761 GOODKAOJ_00008 4905 9 Gut 0.10 protein_coding missense_variant MODERATE 2968G>T Ala990Ser
M0150762 GOODKAOJ_00008 4927 59 Gut 0.63 protein_coding synonymous_variant LOW 2946T>C Asp982Asp
M0150763 GOODKAOJ_00008 4947 62 Gut 0.66 protein_coding missense_variant MODERATE 2926T>C Cys976Arg
M0150764 GOODKAOJ_00008 5059 39 Gut 0.41 protein_coding synonymous_variant LOW 2814C>T Ile938Ile
M0150765 GOODKAOJ_00008 5068 62 Gut 0.66 protein_coding synonymous_variant LOW 2805C>T Tyr935Tyr
M0150766 GOODKAOJ_00008 5070 62 Gut 0.66 protein_coding missense_variant MODERATE 2803T>C Tyr935His
M0150767 GOODKAOJ_00008 5092 42 Gut 0.45 protein_coding synonymous_variant LOW 2781G>T Ala927Ala
M0150768 GOODKAOJ_00008 5098 62 Gut 0.66 protein_coding synonymous_variant LOW 2775G>A Ala925Ala
M0150769 GOODKAOJ_00008 5099 62 Gut 0.66 protein_coding missense_variant MODERATE 2774C>T Ala925Val
M0150770 GOODKAOJ_00008 5130 62 Gut 0.66 protein_coding missense_variant MODERATE 2743G>A Ala915Thr
M0150771 GOODKAOJ_00008 5137 62 Gut 0.66 protein_coding synonymous_variant LOW 2736G>A Gly912Gly
M0150772 GOODKAOJ_00008 5138 62 Gut 0.66 protein_coding missense_variant MODERATE 2735G>A Gly912Glu
M0150773 GOODKAOJ_00008 5140 62 Gut 0.66 protein_coding missense_variant MODERATE 2733C>A His911Gln
M0150774 GOODKAOJ_00008 5219 62 Gut 0.66 protein_coding missense_variant MODERATE 2654G>A Gly885Glu
M0150775 GOODKAOJ_00008 5243 55 Gut 0.59 protein_coding missense_variant MODERATE 2630C>A Ala877Glu
M0150776 GOODKAOJ_00008 5267 64 Gut 0.68 protein_coding missense_variant MODERATE 2606C>G Ala869Gly
M0150777 GOODKAOJ_00008 5275 65 Gut 0.69 protein_coding synonymous_variant LOW 2598A>G Arg866Arg
M0150778 GOODKAOJ_00008 5303 51 Gut 0.54 protein_coding missense_variant MODERATE 2570G>T Arg857Leu
M0150779 GOODKAOJ_00008 5353 51 Gut 0.54 protein_coding synonymous_variant LOW 2520G>T Gly840Gly
M0150780 GOODKAOJ_00008 5383 59 Gut 0.63 protein_coding synonymous_variant LOW 2490C>T Gly830Gly
M0150781 GOODKAOJ_00008 5464 34 Gut 0.36 protein_coding synonymous_variant LOW 2409A>C Leu803Leu
M0150782 GOODKAOJ_00008 5680 61 Gut 0.65 protein_coding synonymous_variant LOW 2193A>C Gly731Gly
M0150783 GOODKAOJ_00008 5686 61 Gut 0.65 protein_coding synonymous_variant LOW 2187T>C Asp729Asp
M0150784 GOODKAOJ_00008 5716 61 Gut 0.65 protein_coding synonymous_variant LOW 2157G>C Val719Val
M0150785 GOODKAOJ_00008 5723 50 Gut 0.53 protein_coding missense_variant MODERATE 2150A>C Asp717Ala
M0150786 GOODKAOJ_00008 5965 57 Gut 0.61 protein_coding synonymous_variant LOW 1908A>G Arg636Arg
M0150787 GOODKAOJ_00008 6004 49 Gut 0.52 protein_coding synonymous_variant LOW 1869C>T Asn623Asn
M0150788 GOODKAOJ_00008 6069 62 Gut 0.66 protein_coding synonymous_variant LOW 1804T>C Leu602Leu
M0150789 GOODKAOJ_00008 6130 56 Gut 0.60 protein_coding synonymous_variant LOW 1743T>C Asp581Asp
M0150790 GOODKAOJ_00008 6222 64 Gut 0.68 protein_coding missense_variant MODERATE 1651A>G Asn551Asp
M0150791 GOODKAOJ_00008 6232 61 Gut 0.65 protein_coding synonymous_variant LOW 1641T>C His547His
M0150792 GOODKAOJ_00008 6234 52 Gut 0.55 protein_coding missense_variant MODERATE 1639C>A His547Asn
M0150793 GOODKAOJ_00008 6235 52 Gut 0.55 protein_coding synonymous_variant LOW 1638T>G Arg546Arg
M0150794 GOODKAOJ_00008 6442 10 Gut 0.11 protein_coding synonymous_variant LOW 1431C>T Ile477Ile
M0150795 GOODKAOJ_00008 6512 61 Gut 0.65 protein_coding missense_variant MODERATE 1361G>A Ser454Asn
M0150796 GOODKAOJ_00008 7061 45 Gut 0.48 protein_coding missense_variant MODERATE 812A>G Glu271Gly
M0150797 GOODKAOJ_00008 7135 47 Gut 0.50 protein_coding synonymous_variant LOW 738C>T Asn246Asn
M0150798 GOODKAOJ_00008 7630 37 Gut 0.39 protein_coding synonymous_variant LOW 243G>T Ala81Ala
M0150799 GOODKAOJ_00008 7636 33 Gut 0.35 protein_coding synonymous_variant LOW 237C>T Phe79Phe
M0150800 GOODKAOJ_00008 7719 47 Gut 0.50 protein_coding missense_variant MODERATE 154C>T Pro52Ser
M0150801 GOODKAOJ_00008 7720 47 Gut 0.50 protein_coding synonymous_variant LOW 153C>T Cys51Cys
M0150802 GOODKAOJ_00008 7725 42 Gut 0.45 protein_coding missense_variant MODERATE 148G>A Glu50Lys
M0150803 GOODKAOJ_00008 7750 51 Gut 0.54 protein_coding synonymous_variant LOW 123T>C Cys41Cys
M0150804 GOODKAOJ_00008 7752 56 Gut 0.60 protein_coding missense_variant MODERATE 121T>C Cys41Arg
M0150805 GOODKAOJ_00008 7788 48 Gut 0.51 protein_coding missense_variant MODERATE 85T>C Phe29Leu
M0150806 GOODKAOJ_00008 7789 43 Gut 0.46 protein_coding synonymous_variant LOW 84T>C Gly28Gly
M0150807 GOODKAOJ_00006 7901 29 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -4805T>C None
M0150808 GOODKAOJ_00006 7936 29 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -4840A>G None
M0150809 GOODKAOJ_00009 8261 9 Gut 0.10 protein_coding missense_variant MODERATE 40G>A Asp14Asn
M0150810 GOODKAOJ_00008 8892 9 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -1020C>T None
M0150811 GOODKAOJ_00008 9192 7 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -1320G>A None
M0150812 GOODKAOJ_00008 9213 9 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -1341C>A None
M0150813 GOODKAOJ_00008 9423 7 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -1551C>T None
M0150814 GOODKAOJ_00004 2163 4 Gut 0.04 protein_coding synonymous_variant LOW 267C>T Gly89Gly
M0150815 GOODKAOJ_00008 4717 3 Gut 0.03 protein_coding synonymous_variant LOW 3156G>A Ser1052Ser
M0150816 GOODKAOJ_00008 6682 46 Gut 0.49 protein_coding synonymous_variant LOW 1191G>A Gln397Gln
M0150817 GOODKAOJ_00008 6684 46 Gut 0.49 protein_coding missense_variant MODERATE 1189C>A Gln397Lys
M0150818 GOODKAOJ_00008 6727 54 Gut 0.57 protein_coding synonymous_variant LOW 1146T>C Asp382Asp
M0150819 GOODKAOJ_00008 6742 54 Gut 0.57 protein_coding synonymous_variant LOW 1131A>G Glu377Glu
M0150820 GOODKAOJ_00008 6773 34 Gut 0.36 protein_coding missense_variant MODERATE 1100T>C Met367Thr
M0150821 GOODKAOJ_00008 6792 25 Gut 0.27 protein_coding missense_variant MODERATE 1081A>G Ile361Val
M0150822 GOODKAOJ_00008 6817 42 Gut 0.45 protein_coding synonymous_variant LOW 1056C>G Ala352Ala
M0150823 GOODKAOJ_00002 748 5 Gut 0.05 protein_coding stop_gained HIGH 221G>A Trp74*
M0150824 GOODKAOJ_00008 3774 35 Gut 0.37 protein_coding missense_variant MODERATE 4099G>C Gly1367Arg
M0150825 GOODKAOJ_00008 5122 30 Gut 0.32 protein_coding synonymous_variant LOW 2751C>T Leu917Leu
M0150826 GOODKAOJ_00008 5890 44 Gut 0.47 protein_coding synonymous_variant LOW 1983C>T Arg661Arg
M0150827 GOODKAOJ_00002 666 31 Gut 0.33 protein_coding missense_variant MODERATE 139A>T Asn47Tyr
M0150828 GOODKAOJ_00009 8692 21 Gut 0.22 protein_coding synonymous_variant LOW 471A>G Thr157Thr
M0150829 GOODKAOJ_00001 103 9 Gut 0.10 protein_coding missense_variant MODERATE 76A>G Thr26Ala
M0150830 GOODKAOJ_00002 423 9 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -105A>G None
M0150831 GOODKAOJ_00002 874 16 Gut 0.17 protein_coding missense_variant MODERATE 347C>T Thr116Ile
M0150832 GOODKAOJ_00002 1024 12 Gut 0.13 protein_coding missense_variant MODERATE 497G>A Ser166Asn
M0150833 GOODKAOJ_00003 1120 16 Gut 0.17 protein_coding synonymous_variant LOW 9A>T Thr3Thr
M0150834 GOODKAOJ_00003 1744 13 Gut 0.14 protein_coding synonymous_variant LOW 633C>T Gly211Gly
M0150835 GOODKAOJ_00004 2202 16 Gut 0.17 protein_coding synonymous_variant LOW 306T>C Ser102Ser
M0150836 GOODKAOJ_00004 2228 12 Gut 0.13 protein_coding missense_variant MODERATE 332T>C Val111Ala
M0150837 GOODKAOJ_00005 2384 12 Gut 0.13 protein_coding synonymous_variant LOW 123G>A Thr41Thr
M0150838 GOODKAOJ_00005 2580 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -74A>G None
M0150839 GOODKAOJ_00005 2583 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -77A>G None
M0150840 GOODKAOJ_00005 2610 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -104T>G None
M0150841 GOODKAOJ_00005 2762 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -256A>G None
M0150842 GOODKAOJ_00005 2769 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -263C>T None
M0150843 GOODKAOJ_00005 2784 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -278C>T None
M0150844 GOODKAOJ_00005 2792 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -286G>A None
M0150845 GOODKAOJ_00005 2814 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -308C>A None
M0150846 GOODKAOJ_00005 2815 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -309C>A None
M0150847 GOODKAOJ_00005 2816 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -310T>C None
M0150848 GOODKAOJ_00005 2829 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -323A>G None
M0150849 GOODKAOJ_00005 2836 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -330T>C None
M0150850 GOODKAOJ_00005 2844 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -338C>T None
M0150851 GOODKAOJ_00006 2860 10 Gut 0.11 protein_coding synonymous_variant LOW 237A>G Arg79Arg
M0150852 GOODKAOJ_00006 2862 10 Gut 0.11 protein_coding synonymous_variant LOW 235A>C Arg79Arg
M0150853 GOODKAOJ_00006 2903 10 Gut 0.11 protein_coding missense_variant MODERATE 194A>C Asn65Thr
M0150854 GOODKAOJ_00006 2908 10 Gut 0.11 protein_coding synonymous_variant LOW 189G>T Ala63Ala
M0150855 GOODKAOJ_00006 3000 10 Gut 0.11 protein_coding missense_variant MODERATE 97A>G Thr33Ala
M0150856 GOODKAOJ_00008 4834 9 Gut 0.10 protein_coding synonymous_variant LOW 3039T>C His1013His
M0150857 GOODKAOJ_00008 5162 11 Gut 0.12 protein_coding missense_variant MODERATE 2711G>A Arg904His
M0150858 GOODKAOJ_00008 5562 11 Gut 0.12 protein_coding missense_variant MODERATE 2311G>A Ala771Thr
M0150859 GOODKAOJ_00008 5707 6 Gut 0.06 protein_coding synonymous_variant LOW 2166G>T Ala722Ala
M0150860 GOODKAOJ_00008 5875 11 Gut 0.12 protein_coding synonymous_variant LOW 1998G>A Thr666Thr
M0150861 GOODKAOJ_00008 5893 11 Gut 0.12 protein_coding synonymous_variant LOW 1980C>A Ile660Ile
M0150862 GOODKAOJ_00008 6128 8 Gut 0.09 protein_coding missense_variant MODERATE 1745G>A Arg582His
M0150863 GOODKAOJ_00008 6183 14 Gut 0.15 protein_coding missense_variant MODERATE 1690T>A Ser564Thr
M0150864 GOODKAOJ_00008 6187 14 Gut 0.15 protein_coding synonymous_variant LOW 1686G>A Gly562Gly
M0150865 GOODKAOJ_00008 6195 9 Gut 0.10 protein_coding missense_variant MODERATE 1678G>A Ala560Thr
M0150866 GOODKAOJ_00008 6202 12 Gut 0.13 protein_coding synonymous_variant LOW 1671T>C Tyr557Tyr
M0150867 GOODKAOJ_00008 6220 16 Gut 0.17 protein_coding synonymous_variant LOW 1653T>C Asn551Asn
M0150868 GOODKAOJ_00008 6599 10 Gut 0.11 protein_coding missense_variant MODERATE 1274T>C Val425Ala
M0150869 GOODKAOJ_00008 6651 10 Gut 0.11 protein_coding synonymous_variant LOW 1222C>A Arg408Arg
M0150870 GOODKAOJ_00008 6826 9 Gut 0.10 protein_coding synonymous_variant LOW 1047T>C Gly349Gly
M0150871 GOODKAOJ_00008 6834 7 Gut 0.07 protein_coding missense_variant MODERATE 1039G>A Gly347Arg
M0150872 GOODKAOJ_00008 6853 9 Gut 0.10 protein_coding missense_variant MODERATE 1020T>G Asp340Glu
M0150873 GOODKAOJ_00008 6895 11 Gut 0.12 protein_coding synonymous_variant LOW 978T>G Ala326Ala
M0150874 GOODKAOJ_00008 6949 11 Gut 0.12 protein_coding synonymous_variant LOW 924G>A Gly308Gly
M0150875 GOODKAOJ_00008 6976 9 Gut 0.10 protein_coding synonymous_variant LOW 897A>G Ala299Ala
M0150876 GOODKAOJ_00008 7051 13 Gut 0.14 protein_coding missense_variant MODERATE 822T>G Asp274Glu
M0150877 GOODKAOJ_00008 7066 11 Gut 0.12 protein_coding synonymous_variant LOW 807T>C Asp269Asp
M0150878 GOODKAOJ_00008 7210 14 Gut 0.15 protein_coding synonymous_variant LOW 663G>T Thr221Thr
M0150879 GOODKAOJ_00008 7264 9 Gut 0.10 protein_coding synonymous_variant LOW 609C>T Thr203Thr
M0150880 GOODKAOJ_00008 7453 9 Gut 0.10 protein_coding synonymous_variant LOW 420G>A Arg140Arg
M0150881 GOODKAOJ_00008 7494 9 Gut 0.10 protein_coding missense_variant MODERATE 379G>T Ala127Ser
M0150882 GOODKAOJ_00008 7693 9 Gut 0.10 protein_coding synonymous_variant LOW 180T>G Gly60Gly
M0150883 GOODKAOJ_00008 7699 9 Gut 0.10 protein_coding synonymous_variant LOW 174C>T Asp58Asp
M0150884 GOODKAOJ_00006 7892 20 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -4796G>A None
M0150885 GOODKAOJ_00007 8171 9 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4479C>T None
M0150886 GOODKAOJ_00009 8432 9 Gut 0.10 protein_coding missense_variant MODERATE 211G>A Ala71Thr
M0150887 GOODKAOJ_00009 8515 9 Gut 0.10 protein_coding synonymous_variant LOW 294G>A Gln98Gln
M0150888 GOODKAOJ_00009 8539 8 Gut 0.09 protein_coding synonymous_variant LOW 318G>A Arg106Arg
M0150889 GOODKAOJ_00009 8680 9 Gut 0.10 protein_coding synonymous_variant LOW 459C>A Ala153Ala
M0150890 GOODKAOJ_00009 8683 9 Gut 0.10 protein_coding synonymous_variant LOW 462T>C Asp154Asp
M0150891 GOODKAOJ_00009 8686 10 Gut 0.11 protein_coding missense_variant MODERATE 465C>A His155Gln
M0150892 GOODKAOJ_00008 9194 6 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -1322G>A None
M0150893 GOODKAOJ_00008 8749 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -877C>T None
M0150894 GOODKAOJ_00005 2487 3 Gut 0.03 protein_coding missense_variant MODERATE 20G>A Gly7Glu
M0150895 GOODKAOJ_00002 517 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -11G>A None
M0150896 GOODKAOJ_00006 3073 9 Gut 0.10 protein_coding synonymous_variant LOW 24C>T Leu8Leu
M0150897 GOODKAOJ_00007 3502 22 Gut 0.23 protein_coding missense_variant MODERATE 191A>G Lys64Arg
M0150898 GOODKAOJ_00007 3549 11 Gut 0.12 protein_coding synonymous_variant LOW 144G>A Gln48Gln
M0150899 GOODKAOJ_00007 3552 11 Gut 0.12 protein_coding synonymous_variant LOW 141A>C Ala47Ala
M0150900 GOODKAOJ_00005 3757 24 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -1251G>C None
M0150901 GOODKAOJ_00005 3763 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1257C>T None
M0150902 GOODKAOJ_00008 3838 13 Gut 0.14 protein_coding synonymous_variant LOW 4035A>G Ala1345Ala
M0150903 GOODKAOJ_00008 3859 20 Gut 0.21 protein_coding missense_variant MODERATE 4014C>G His1338Gln
M0150904 GOODKAOJ_00008 3882 23 Gut 0.24 protein_coding missense_variant MODERATE 3991T>C Tyr1331His
M0150905 GOODKAOJ_00008 3920 20 Gut 0.21 protein_coding missense_variant MODERATE 3953T>C Val1318Ala
M0150906 GOODKAOJ_00008 3980 11 Gut 0.12 protein_coding missense_variant MODERATE 3893A>G Lys1298Arg
M0150907 GOODKAOJ_00008 3985 11 Gut 0.12 protein_coding synonymous_variant LOW 3888C>T Arg1296Arg
M0150908 GOODKAOJ_00008 4211 23 Gut 0.24 protein_coding missense_variant MODERATE 3662G>A Gly1221Asp
M0150909 GOODKAOJ_00008 4214 23 Gut 0.24 protein_coding missense_variant MODERATE 3659A>G Asn1220Ser
M0150910 GOODKAOJ_00008 4215 23 Gut 0.24 protein_coding missense_variant MODERATE 3658A>C Asn1220His
M0150911 GOODKAOJ_00008 4313 10 Gut 0.11 protein_coding missense_variant MODERATE 3560G>A Gly1187Asp
M0150912 GOODKAOJ_00008 4314 10 Gut 0.11 protein_coding missense_variant MODERATE 3559G>C Gly1187Arg
M0150913 GOODKAOJ_00008 4321 10 Gut 0.11 protein_coding missense_variant MODERATE 3552G>C Glu1184Asp
M0150914 GOODKAOJ_00008 4409 20 Gut 0.21 protein_coding missense_variant MODERATE 3464G>A Gly1155Asp
M0150915 GOODKAOJ_00008 4423 8 Gut 0.09 protein_coding missense_variant MODERATE 3450G>T Gln1150His
M0150916 GOODKAOJ_00008 4759 6 Gut 0.06 protein_coding synonymous_variant LOW 3114A>C Arg1038Arg
M0150917 GOODKAOJ_00008 4926 16 Gut 0.17 protein_coding missense_variant MODERATE 2947A>G Lys983Glu
M0150918 GOODKAOJ_00008 4933 9 Gut 0.10 protein_coding synonymous_variant LOW 2940A>G Leu980Leu
M0150919 GOODKAOJ_00008 4945 7 Gut 0.07 protein_coding synonymous_variant LOW 2928C>T Cys976Cys
M0150920 GOODKAOJ_00008 4981 6 Gut 0.06 protein_coding missense_variant MODERATE 2892C>G Ser964Arg
M0150921 GOODKAOJ_00008 4993 9 Gut 0.10 protein_coding missense_variant MODERATE 2880T>G Asp960Glu
M0150922 GOODKAOJ_00008 5174 7 Gut 0.07 protein_coding missense_variant MODERATE 2699C>T Ser900Leu
M0150923 GOODKAOJ_00008 5402 7 Gut 0.07 protein_coding missense_variant MODERATE 2471C>T Ala824Val
M0150924 GOODKAOJ_00008 5461 25 Gut 0.27 protein_coding synonymous_variant LOW 2412A>C Gly804Gly
M0150925 GOODKAOJ_00008 5584 11 Gut 0.12 protein_coding synonymous_variant LOW 2289C>A Gly763Gly
M0150926 GOODKAOJ_00008 5995 9 Gut 0.10 protein_coding synonymous_variant LOW 1878C>A Gly626Gly
M0150927 GOODKAOJ_00008 6466 7 Gut 0.07 protein_coding synonymous_variant LOW 1407A>C Gly469Gly
M0150928 GOODKAOJ_00008 7567 8 Gut 0.09 protein_coding synonymous_variant LOW 306C>T Val102Val
M0150929 GOODKAOJ_00009 8287 8 Gut 0.09 protein_coding synonymous_variant LOW 66G>A Val22Val
M0150930 GOODKAOJ_00008 8817 8 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -945A>G None
M0150931 GOODKAOJ_00008 8819 8 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -947C>A None
M0150932 GOODKAOJ_00008 8904 8 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -1032A>G None
M0150933 GOODKAOJ_00008 8910 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1038C>T None
M0150934 GOODKAOJ_00008 7219 5 Gut 0.05 protein_coding synonymous_variant LOW 654C>T His218His
M0150935 GOODKAOJ_00008 4837 13 Gut 0.14 protein_coding synonymous_variant LOW 3036T>C Arg1012Arg
M0150936 GOODKAOJ_00005 2707 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -201G>A None
M0150937 GOODKAOJ_00008 4111 3 Gut 0.03 protein_coding missense_variant MODERATE 3762C>A Asp1254Glu
M0150938 GOODKAOJ_00008 9133 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1261G>A None
M0150939 GOODKAOJ_00008 4512 3 Gut 0.03 protein_coding synonymous_variant LOW 3361C>T Leu1121Leu
M0150940 GOODKAOJ_00008 4525 11 Gut 0.12 protein_coding synonymous_variant LOW 3348C>T Ser1116Ser
M0150941 GOODKAOJ_00008 4537 12 Gut 0.13 protein_coding synonymous_variant LOW 3336C>T Asp1112Asp
M0150942 GOODKAOJ_00008 4564 11 Gut 0.12 protein_coding synonymous_variant LOW 3309C>T Arg1103Arg
M0150943 GOODKAOJ_00008 4582 11 Gut 0.12 protein_coding synonymous_variant LOW 3291C>T Asp1097Asp
M0150944 GOODKAOJ_00008 4944 3 Gut 0.03 protein_coding missense_variant MODERATE 2929C>A Leu977Met
M0150945 GOODKAOJ_00008 4964 3 Gut 0.03 protein_coding missense_variant MODERATE 2909C>A Ala970Glu
M0150946 GOODKAOJ_00008 4982 3 Gut 0.03 protein_coding missense_variant MODERATE 2891G>T Ser964Ile
M0150947 GOODKAOJ_00008 5959 7 Gut 0.07 protein_coding synonymous_variant LOW 1914G>T Thr638Thr
M0150948 GOODKAOJ_00008 7092 4 Gut 0.04 protein_coding missense_variant MODERATE 781G>A Ala261Thr
M0150949 GOODKAOJ_00008 7351 4 Gut 0.04 protein_coding synonymous_variant LOW 522C>T Asn174Asn
M0150950 GOODKAOJ_00008 7468 4 Gut 0.04 protein_coding synonymous_variant LOW 405C>T Arg135Arg
M0150951 GOODKAOJ_00008 7535 4 Gut 0.04 protein_coding missense_variant MODERATE 338A>C Lys113Thr
M0150952 GOODKAOJ_00008 7536 4 Gut 0.04 protein_coding missense_variant MODERATE 337A>G Lys113Glu
M0150953 GOODKAOJ_00008 7543 4 Gut 0.04 protein_coding synonymous_variant LOW 330C>T Ala110Ala
M0150954 GOODKAOJ_00008 7618 4 Gut 0.04 protein_coding synonymous_variant LOW 255C>T Arg85Arg
M0150955 GOODKAOJ_00008 7669 4 Gut 0.04 protein_coding synonymous_variant LOW 204C>T Arg68Arg
M0150956 GOODKAOJ_00008 7717 13 Gut 0.14 protein_coding synonymous_variant LOW 156T>C Pro52Pro
M0150957 GOODKAOJ_00008 7727 5 Gut 0.05 protein_coding missense_variant MODERATE 146C>T Thr49Met
M0150958 GOODKAOJ_00008 7728 5 Gut 0.05 protein_coding missense_variant MODERATE 145A>G Thr49Ala
M0150959 GOODKAOJ_00008 7738 5 Gut 0.05 protein_coding synonymous_variant LOW 135C>T Tyr45Tyr
M0150960 GOODKAOJ_00008 7763 5 Gut 0.05 protein_coding missense_variant MODERATE 110C>G Ser37Cys
M0150961 GOODKAOJ_00008 7764 5 Gut 0.05 protein_coding missense_variant MODERATE 109T>G Ser37Ala
M0150962 GOODKAOJ_00008 7771 5 Gut 0.05 protein_coding synonymous_variant LOW 102C>T Gly34Gly
M0150963 GOODKAOJ_00008 7833 5 Gut 0.05 protein_coding missense_variant MODERATE 40T>G Ser14Ala
M0150964 GOODKAOJ_00006 7897 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4801G>A None
M0150965 GOODKAOJ_00006 7907 5 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4811G>T None
M0150966 GOODKAOJ_00006 7909 5 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4813C>T None
M0150967 GOODKAOJ_00007 3204 11 Gut 0.12 protein_coding synonymous_variant LOW 489C>T Asp163Asp
M0150968 GOODKAOJ_00007 3387 11 Gut 0.12 protein_coding synonymous_variant LOW 306C>G Ala102Ala
M0150969 GOODKAOJ_00007 3416 11 Gut 0.12 protein_coding missense_variant MODERATE 277G>T Ala93Ser
M0150970 GOODKAOJ_00007 3417 11 Gut 0.12 protein_coding synonymous_variant LOW 276C>G Gly92Gly
M0150971 GOODKAOJ_00007 3560 10 Gut 0.11 protein_coding synonymous_variant LOW 133T>C Leu45Leu
M0150972 GOODKAOJ_00007 3561 10 Gut 0.11 protein_coding synonymous_variant LOW 132A>G Thr44Thr
M0150973 GOODKAOJ_00008 3778 9 Gut 0.10 protein_coding synonymous_variant LOW 4095G>T Gly1365Gly
M0150974 GOODKAOJ_00008 3802 9 Gut 0.10 protein_coding synonymous_variant LOW 4071C>A Gly1357Gly
M0150975 GOODKAOJ_00008 4391 9 Gut 0.10 protein_coding missense_variant MODERATE 3482C>T Ala1161Val
M0150976 GOODKAOJ_00008 4395 9 Gut 0.10 protein_coding synonymous_variant LOW 3478C>T Leu1160Leu
M0150977 GOODKAOJ_00008 4396 9 Gut 0.10 protein_coding synonymous_variant LOW 3477C>T Arg1159Arg
M0150978 GOODKAOJ_00008 4399 9 Gut 0.10 protein_coding synonymous_variant LOW 3474G>T Ala1158Ala
M0150979 GOODKAOJ_00008 4485 9 Gut 0.10 protein_coding missense_variant MODERATE 3388C>A His1130Asn
M0150980 GOODKAOJ_00008 4495 9 Gut 0.10 protein_coding synonymous_variant LOW 3378G>A Gln1126Gln
M0150981 GOODKAOJ_00008 4513 9 Gut 0.10 protein_coding synonymous_variant LOW 3360C>T Arg1120Arg
M0150982 GOODKAOJ_00008 4540 9 Gut 0.10 protein_coding synonymous_variant LOW 3333C>T His1111His
M0150983 GOODKAOJ_00008 4541 9 Gut 0.10 protein_coding missense_variant MODERATE 3332A>G His1111Arg
M0150984 GOODKAOJ_00008 4543 9 Gut 0.10 protein_coding synonymous_variant LOW 3330G>A Glu1110Glu
M0150985 GOODKAOJ_00008 4549 9 Gut 0.10 protein_coding synonymous_variant LOW 3324A>G Glu1108Glu
M0150986 GOODKAOJ_00008 4614 9 Gut 0.10 protein_coding missense_variant MODERATE 3259T>G Ser1087Ala
M0150987 GOODKAOJ_00008 4633 10 Gut 0.11 protein_coding synonymous_variant LOW 3240C>T Leu1080Leu
M0150988 GOODKAOJ_00008 5236 9 Gut 0.10 protein_coding synonymous_variant LOW 2637T>C Asn879Asn
M0150989 GOODKAOJ_00008 5237 9 Gut 0.10 protein_coding missense_variant MODERATE 2636A>G Asn879Ser
M0150990 GOODKAOJ_00008 6778 8 Gut 0.09 protein_coding synonymous_variant LOW 1095G>C Arg365Arg
M0150991 GOODKAOJ_00008 6869 8 Gut 0.09 protein_coding missense_variant MODERATE 1004A>C Asp335Ala
M0150992 GOODKAOJ_00008 6871 8 Gut 0.09 protein_coding synonymous_variant LOW 1002C>T Leu334Leu
M0150993 GOODKAOJ_00008 7174 8 Gut 0.09 protein_coding synonymous_variant LOW 699C>T Asn233Asn
M0150994 GOODKAOJ_00008 7180 8 Gut 0.09 protein_coding synonymous_variant LOW 693C>T Leu231Leu
M0150995 GOODKAOJ_00008 7381 10 Gut 0.11 protein_coding synonymous_variant LOW 492T>C Pro164Pro
M0150996 GOODKAOJ_00008 7591 8 Gut 0.09 protein_coding synonymous_variant LOW 282C>T Ser94Ser
M0150997 GOODKAOJ_00008 7800 8 Gut 0.09 protein_coding missense_variant MODERATE 73G>A Ala25Thr
M0150998 GOODKAOJ_00006 7893 6 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4797C>T None
M0150999 GOODKAOJ_00006 7894 6 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4798G>A None
M0151000 GOODKAOJ_00007 8154 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4462A>G None
M0151001 GOODKAOJ_00009 8231 3 Gut 0.03 protein_coding missense_variant MODERATE 10G>A Ala4Thr
M0151002 GOODKAOJ_00009 8249 3 Gut 0.03 protein_coding missense_variant MODERATE 28A>G Thr10Ala
M0151003 GOODKAOJ_00009 8250 3 Gut 0.03 protein_coding missense_variant MODERATE 29C>G Thr10Ser
M0151004 GOODKAOJ_00009 8252 3 Gut 0.03 protein_coding missense_variant MODERATE 31G>A Gly11Ser
M0151005 GOODKAOJ_00009 8255 3 Gut 0.03 protein_coding missense_variant MODERATE 34T>C Ser12Pro
M0151006 GOODKAOJ_00009 8256 3 Gut 0.03 protein_coding missense_variant MODERATE 35C>T Ser12Leu
M0151007 GOODKAOJ_00009 8259 3 Gut 0.03 protein_coding missense_variant MODERATE 38A>C Gln13Pro
M0151008 GOODKAOJ_00009 8263 3 Gut 0.03 protein_coding missense_variant MODERATE 42C>G Asp14Glu
M0151009 GOODKAOJ_00009 8266 4 Gut 0.04 protein_coding synonymous_variant LOW 45C>T Asp15Asp
M0151010 GOODKAOJ_00009 8275 3 Gut 0.03 protein_coding synonymous_variant LOW 54G>T Gly18Gly
M0151011 GOODKAOJ_00009 8278 3 Gut 0.03 protein_coding missense_variant MODERATE 57C>G His19Gln
M0151012 GOODKAOJ_00009 8280 3 Gut 0.03 protein_coding missense_variant MODERATE 59A>C Glu20Ala
M0151013 GOODKAOJ_00009 8281 3 Gut 0.03 protein_coding missense_variant MODERATE 60G>T Glu20Asp
M0151014 GOODKAOJ_00009 8284 3 Gut 0.03 protein_coding synonymous_variant LOW 63C>G Pro21Pro
M0151015 GOODKAOJ_00009 8295 3 Gut 0.03 protein_coding missense_variant MODERATE 74A>G Lys25Arg
M0151016 GOODKAOJ_00009 8296 3 Gut 0.03 protein_coding synonymous_variant LOW 75A>G Lys25Lys
M0151017 GOODKAOJ_00009 8401 8 Gut 0.09 protein_coding synonymous_variant LOW 180A>G Thr60Thr
M0151018 GOODKAOJ_00009 8462 8 Gut 0.09 protein_coding missense_variant MODERATE 241A>G Asn81Asp
M0151019 GOODKAOJ_00009 8620 3 Gut 0.03 protein_coding synonymous_variant LOW 399C>T Gly133Gly
M0151020 GOODKAOJ_00008 9657 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1785G>A None
M0151021 GOODKAOJ_00008 5537 3 Gut 0.03 protein_coding missense_variant MODERATE 2336C>T Ser779Leu
M0151022 GOODKAOJ_00008 6919 3 Gut 0.03 protein_coding synonymous_variant LOW 954G>A Ala318Ala
M0151023 GOODKAOJ_00009 8536 6 Gut 0.06 protein_coding synonymous_variant LOW 315C>T Ala105Ala
M0151024 GOODKAOJ_00005 2596 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -90T>C None
M0151025 GOODKAOJ_00002 516 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -12G>A None
M0151026 GOODKAOJ_00008 4095 3 Gut 0.03 protein_coding missense_variant MODERATE 3778A>G Thr1260Ala
M0151027 GOODKAOJ_00008 4097 3 Gut 0.03 protein_coding missense_variant MODERATE 3776G>A Arg1259His
M0151028 GOODKAOJ_00008 4135 3 Gut 0.03 protein_coding synonymous_variant LOW 3738G>A Glu1246Glu
M0151029 GOODKAOJ_00008 5392 3 Gut 0.03 protein_coding synonymous_variant LOW 2481C>T Gly827Gly
M0151030 GOODKAOJ_00008 6884 3 Gut 0.03 protein_coding missense_variant MODERATE 989T>C Ile330Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term