Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C286
  Reference Plasmid   NC_007974.2
  Reference Plasmid Size   2580084
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0084563 PEBPCGKJ_01500 1649822 3 Skin 0.19 protein_coding synonymous_variant LOW 915T>C Leu305Leu
M0084564 PEBPCGKJ_01500 1650017 3 Skin 0.19 protein_coding synonymous_variant LOW 1110C>T Ser370Ser
M0084565 PEBPCGKJ_00562 611874 3 Skin 0.19 protein_coding synonymous_variant LOW 915T>C Leu305Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
PEBPCGKJ_00207 VFG002530 Flagella 74.5 1.2e-60 8 160 0.9329 0.8743 Motility chemotaxis protein CheW experiment
PEBPCGKJ_00210 VFG002526 Flagella 76.5 2.1e-155 5 357 0.9888 0.9698 Motility chemotaxis-specific methylesterase experiment
PEBPCGKJ_00211 VFG002525 Flagella 73.4 5.4e-51 12 139 0.9209 0.9771 Motility chemotaxis protein CheY experiment
PEBPCGKJ_00216 VFG002522 Flagella 71.9 6.4e-278 8 695 0.9899 0.9829 Motility flagellar biosynthesis protein FlhA experiment
PEBPCGKJ_00257 VFG002346 Flagella 74.6 6.4e-106 1 260 0.9962 1 Motility flagellar basal-body rod protein FlgG experiment
PEBPCGKJ_01151 VFG037177 Phospholipase C 72.3 0 2 742 0.9946 0.9987 Exotoxin phospholipase C experiment
PEBPCGKJ_01392 VFG037720 AdeFGH efflux pump 75.7 0 19 1071 0.9741 0.9943 Biofilm cation/multidrug efflux pump experiment
PEBPCGKJ_01827 VFG002338 Flagella 74.4 5e-90 25 262 0.9015 0.952 Motility flagellar biosynthetic protein FliP experiment
PEBPCGKJ_02131 VFG037028 KatA 71.5 7e-207 4 475 0.9813 0.9365 Stress survival catalase experiment
EPOGMPAJ_00207 VFG002530 Flagella 74.5 1.2e-60 8 160 0.9329 0.8743 Motility chemotaxis protein CheW experiment
EPOGMPAJ_00210 VFG002526 Flagella 76.5 2.1e-155 5 357 0.9888 0.9698 Motility chemotaxis-specific methylesterase experiment
EPOGMPAJ_00211 VFG002525 Flagella 73.4 5.4e-51 12 139 0.9209 0.9771 Motility chemotaxis protein CheY experiment
EPOGMPAJ_00216 VFG002522 Flagella 71.9 6.4e-278 8 695 0.9899 0.9829 Motility flagellar biosynthesis protein FlhA experiment
EPOGMPAJ_00257 VFG002346 Flagella 74.6 6.4e-106 1 260 0.9962 1 Motility flagellar basal-body rod protein FlgG experiment
EPOGMPAJ_01151 VFG037177 Phospholipase C 72.3 0 2 742 0.9946 0.9987 Exotoxin phospholipase C experiment
EPOGMPAJ_01392 VFG037720 AdeFGH efflux pump 75.7 0 19 1071 0.9741 0.9943 Biofilm cation/multidrug efflux pump experiment
EPOGMPAJ_01827 VFG002338 Flagella 74.4 5e-90 25 262 0.9015 0.952 Motility flagellar biosynthetic protein FliP experiment
EPOGMPAJ_02131 VFG037028 KatA 71.5 7e-207 4 475 0.9813 0.9365 Stress survival catalase experiment
PEBPCGKJ_00207 VFG002530 Flagella 74.5 8.6e-60 8 160 0.9329 0.8743 Motility chemotaxis protein CheW prediction
PEBPCGKJ_00210 VFG025837 Flagella 78.2 9.1e-155 5 357 0.9888 0.9806 Motility chemotaxis-specific methylesterase prediction
PEBPCGKJ_00211 VFG025824 Flagella 75 4.7e-51 12 139 0.9209 0.9771 Motility chemotaxis protein CheY prediction
PEBPCGKJ_00216 VFG002522 Flagella 71.9 4.8e-277 8 695 0.9899 0.9829 Motility flagellar biosynthesis protein FlhA prediction
PEBPCGKJ_00257 VFG043027 Peritrichous flagella 73.5 3.7e-105 1 260 0.9962 1 Motility flagellar basal-body rod protein FlgG prediction
PEBPCGKJ_01151 VFG037173 Phospholipase C 72.2 0 2 742 0.9946 0.9987 Exotoxin phospholipase C prediction
PEBPCGKJ_01392 VFG037724 AdeFGH efflux pump 75.7 0 19 1074 0.9769 0.9972 Biofilm cation/multidrug efflux pump prediction
PEBPCGKJ_01790 VFG025488 Flagella 71.2 6.3e-183 6 481 0.9794 0.9261 Motility flagellum-specific ATP synthase FliI prediction
PEBPCGKJ_01827 VFG043117 Peritrichous flagella 74.3 2.5e-93 22 262 0.9129 0.9837 Motility flagellar type III secretion system pore protein FliP prediction
PEBPCGKJ_02131 VFG037029 KatA 71.2 1.4e-206 4 475 0.9813 0.9365 Stress survival catalase prediction
EPOGMPAJ_00207 VFG002530 Flagella 74.5 8.6e-60 8 160 0.9329 0.8743 Motility chemotaxis protein CheW prediction
EPOGMPAJ_00210 VFG025837 Flagella 78.2 9.1e-155 5 357 0.9888 0.9806 Motility chemotaxis-specific methylesterase prediction
EPOGMPAJ_00211 VFG025824 Flagella 75 4.7e-51 12 139 0.9209 0.9771 Motility chemotaxis protein CheY prediction
EPOGMPAJ_00216 VFG002522 Flagella 71.9 4.8e-277 8 695 0.9899 0.9829 Motility flagellar biosynthesis protein FlhA prediction
EPOGMPAJ_00257 VFG043027 Peritrichous flagella 73.5 3.7e-105 1 260 0.9962 1 Motility flagellar basal-body rod protein FlgG prediction
EPOGMPAJ_01151 VFG037173 Phospholipase C 72.2 0 2 742 0.9946 0.9987 Exotoxin phospholipase C prediction
EPOGMPAJ_01392 VFG037724 AdeFGH efflux pump 75.7 0 19 1074 0.9769 0.9972 Biofilm cation/multidrug efflux pump prediction
EPOGMPAJ_01790 VFG025488 Flagella 71.2 6.3e-183 6 481 0.9794 0.9261 Motility flagellum-specific ATP synthase FliI prediction
EPOGMPAJ_01827 VFG043117 Peritrichous flagella 74.3 2.5e-93 22 262 0.9129 0.9837 Motility flagellar type III secretion system pore protein FliP prediction
EPOGMPAJ_02131 VFG037029 KatA 71.2 1.4e-206 4 475 0.9813 0.9365 Stress survival catalase prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
PEBPCGKJ_00380 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 76.8 3.7e-69 1 151 0.9934 1.0067 experiment
PEBPCGKJ_00381 Chromium (Cr) 87 1.2e-191 5 390 0.9897 0.9626 experiment
PEBPCGKJ_00443 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 70.6 1.5e-143 1 384 0.9922 1.0026 experiment
PEBPCGKJ_00444 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 81.7 0 1 1045 0.9971 0.9990 experiment
PEBPCGKJ_00987 Cadmium (Cd), Zinc (Zn), Cobalt (Co) 80.8 0 1 1037 0.9942 0.9755 experiment
PEBPCGKJ_01392 Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Ethidium Bromide [class: Phenanthridine], Safranin O [class: Azin], Acridine Orange [class: Acridine] 75.7 0 19 1071 0.9741 0.9943 experiment
PEBPCGKJ_01750 Chromium (Cr) 70.7 8.8e-58 1 140 0.9032 1.0000 experiment
PEBPCGKJ_01856 Zinc (Zn) 100 1.5e-215 1 385 1.0000 1.0000 experiment
PEBPCGKJ_02204 Copper (Cu) 75.5 9.4e-273 16 605 1.0099 0.9871 experiment
PEBPCGKJ_02205 Copper (Cu) 80.5 1e-102 1 226 0.9912 0.9826 experiment
EPOGMPAJ_00380 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 76.8 3.7e-69 1 151 0.9934 1.0067 experiment
EPOGMPAJ_00381 Chromium (Cr) 87 1.2e-191 5 390 0.9897 0.9626 experiment
EPOGMPAJ_00443 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 70.6 1.5e-143 1 384 0.9922 1.0026 experiment
EPOGMPAJ_00444 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 81.7 0 1 1045 0.9971 0.9990 experiment
EPOGMPAJ_00987 Cadmium (Cd), Zinc (Zn), Cobalt (Co) 80.8 0 1 1037 0.9942 0.9755 experiment
EPOGMPAJ_01392 Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Ethidium Bromide [class: Phenanthridine], Safranin O [class: Azin], Acridine Orange [class: Acridine] 75.7 0 19 1071 0.9741 0.9943 experiment
EPOGMPAJ_01750 Chromium (Cr) 70.7 8.8e-58 1 140 0.9032 1.0000 experiment
EPOGMPAJ_01856 Zinc (Zn) 100 1.5e-215 1 385 1.0000 1.0000 experiment
EPOGMPAJ_02204 Copper (Cu) 75.5 9.4e-273 16 605 1.0099 0.9871 experiment
EPOGMPAJ_02205 Copper (Cu) 80.5 1e-102 1 226 0.9912 0.9826 experiment
PEBPCGKJ_00380 Chromium (Cr) 87.4 8.2e-78 1 151 0.9934 0.9869 prediction
PEBPCGKJ_00381 Chromium (Cr) 87.4 6.8e-193 3 390 0.9949 0.9676 prediction
PEBPCGKJ_00443 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 70.8 1.2e-141 1 384 0.9922 1.0026 prediction
PEBPCGKJ_00444 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 100 0 1 1048 1.0000 1.0000 prediction
PEBPCGKJ_00445 n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 100 9.4e-272 1 499 1.0000 1.0000 prediction
PEBPCGKJ_00984 Copper (Cu) 71.8 8.3e-81 1 204 1.0000 0.9156 prediction
PEBPCGKJ_00985 Cadmium (Cd), Zinc (Zn) 74.9 1.8e-187 11 471 0.9729 0.9729 prediction
PEBPCGKJ_00987 Cadmium (Cd), Zinc (Zn), Cobalt (Co) 81 0 1 1037 0.9942 0.9755 prediction
PEBPCGKJ_01392 Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Ethidium Bromide [class: Phenanthridine], Safranin O [class: Azin], Acridine Orange [class: Acridine] 76 0 19 1071 0.9741 0.9943 prediction
PEBPCGKJ_01750 Chromium (Cr) 71.7 1.7e-62 1 152 0.9806 0.9935 prediction
PEBPCGKJ_01856 Zinc (Zn) 100 3.4e-213 1 385 1.0000 1.0000 prediction
PEBPCGKJ_02201 Copper (Cu) 100 2.5e-155 1 299 1.0000 1.0000 prediction
PEBPCGKJ_02202 Copper (Cu) 100 1.5e-64 1 128 1.0000 1.0000 prediction
PEBPCGKJ_02203 Copper (Cu) 92.8 4.2e-189 1 360 1.0000 1.0435 prediction
PEBPCGKJ_02204 Copper (Cu), Silver (Ag) 100 0 1 605 1.0000 1.0000 prediction
PEBPCGKJ_02205 Copper (Cu) 100 3.9e-124 1 228 1.0000 1.0000 prediction
PEBPCGKJ_02206 Copper (Cu) 100 1.7e-259 1 462 1.0000 1.0000 prediction
EPOGMPAJ_00380 Chromium (Cr) 87.4 8.2e-78 1 151 0.9934 0.9869 prediction
EPOGMPAJ_00381 Chromium (Cr) 87.4 6.8e-193 3 390 0.9949 0.9676 prediction
EPOGMPAJ_00443 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 70.8 1.2e-141 1 384 0.9922 1.0026 prediction
EPOGMPAJ_00444 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 100 0 1 1048 1.0000 1.0000 prediction
EPOGMPAJ_00445 n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 100 9.4e-272 1 499 1.0000 1.0000 prediction
EPOGMPAJ_00984 Copper (Cu) 71.8 8.3e-81 1 204 1.0000 0.9156 prediction
EPOGMPAJ_00985 Cadmium (Cd), Zinc (Zn) 74.9 1.8e-187 11 471 0.9729 0.9729 prediction
EPOGMPAJ_00987 Cadmium (Cd), Zinc (Zn), Cobalt (Co) 81 0 1 1037 0.9942 0.9755 prediction
EPOGMPAJ_01392 Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Ethidium Bromide [class: Phenanthridine], Safranin O [class: Azin], Acridine Orange [class: Acridine] 76 0 19 1071 0.9741 0.9943 prediction
EPOGMPAJ_01750 Chromium (Cr) 71.7 1.7e-62 1 152 0.9806 0.9935 prediction
EPOGMPAJ_01856 Zinc (Zn) 100 3.4e-213 1 385 1.0000 1.0000 prediction
EPOGMPAJ_02201 Copper (Cu) 100 2.5e-155 1 299 1.0000 1.0000 prediction
EPOGMPAJ_02202 Copper (Cu) 100 1.5e-64 1 128 1.0000 1.0000 prediction
EPOGMPAJ_02203 Copper (Cu) 92.8 4.2e-189 1 360 1.0000 1.0435 prediction
EPOGMPAJ_02204 Copper (Cu), Silver (Ag) 100 0 1 605 1.0000 1.0000 prediction
EPOGMPAJ_02205 Copper (Cu) 100 3.9e-124 1 228 1.0000 1.0000 prediction
EPOGMPAJ_02206 Copper (Cu) 100 1.7e-259 1 462 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
PEBPCGKJ_00443 ARO:3000377 73.1 2.05e-178 1 360 0.9302 0.9399 macrolide antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
PEBPCGKJ_00444 ARO:3000378 81.6 0 1 1045 0.9971 0.9990 macrolide antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
PEBPCGKJ_01392 ARO:3003010 77.4 0 19 1044 0.9491 0.9990 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
PEBPCGKJ_01626 ARO:3004573 74.8 4.85e-235 23 446 0.9237 0.9883 phosphonic acid antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
EPOGMPAJ_00443 ARO:3000377 73.1 2.05e-178 1 360 0.9302 0.9399 macrolide antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
EPOGMPAJ_00444 ARO:3000378 81.6 0 1 1045 0.9971 0.9990 macrolide antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
EPOGMPAJ_01392 ARO:3003010 77.4 0 19 1044 0.9491 0.9990 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
EPOGMPAJ_01626 ARO:3004573 74.8 4.85e-235 23 446 0.9237 0.9883 phosphonic acid antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
PEBPCGKJ_00211 PHI:8732 cheY 73.8 4.6e-49 13 138 0.9065 0.9767 rodents typhoid chemotaxis regulator protein reduced virulence
PEBPCGKJ_00415 PHI:7214 STM14_1005 74.7 2.1e-168 11 389 0.9743 0.9793 rodents salmonellosis putative acyl-CoA dehydrogenase reduced virulence
PEBPCGKJ_00443 PHI:11922 mexA 70.6 2.6e-142 1 384 0.9922 0.9843 rodents infection multidrug resistance protein unaffected pathogenicity
PEBPCGKJ_00444 PHI:11923 mexB 81.7 0 1 1045 0.9971 0.9990 rodents infection multidrug resistance protein unaffected pathogenicity
PEBPCGKJ_00818 PHI:124230 dctA 71.7 1e-166 10 429 0.9292 0.9720 rodents salmonellosis primary dicarboxylate importer unaffected pathogenicity
PEBPCGKJ_01763 PHI:6953 gigX1 70.2 3.5e-152 18 379 0.9501 0.9810 monocots bacterial leaf blight nucleotide sugar transaminase increased virulence (hypervirulence)
PEBPCGKJ_02131 PHI:10648 katA 73.2 1.1e-214 3 475 0.9834 0.9793 rodents opportunistic infection catalase unaffected pathogenicity
EPOGMPAJ_00211 PHI:8732 cheY 73.8 4.6e-49 13 138 0.9065 0.9767 rodents typhoid chemotaxis regulator protein reduced virulence
EPOGMPAJ_00415 PHI:7214 STM14_1005 74.7 2.1e-168 11 389 0.9743 0.9793 rodents salmonellosis putative acyl-CoA dehydrogenase reduced virulence
EPOGMPAJ_00443 PHI:11922 mexA 70.6 2.6e-142 1 384 0.9922 0.9843 rodents infection multidrug resistance protein unaffected pathogenicity
EPOGMPAJ_00444 PHI:11923 mexB 81.7 0 1 1045 0.9971 0.9990 rodents infection multidrug resistance protein unaffected pathogenicity
EPOGMPAJ_00818 PHI:124230 dctA 71.7 1e-166 10 429 0.9292 0.9720 rodents salmonellosis primary dicarboxylate importer unaffected pathogenicity
EPOGMPAJ_01763 PHI:6953 gigX1 70.2 3.5e-152 18 379 0.9501 0.9810 monocots bacterial leaf blight nucleotide sugar transaminase increased virulence (hypervirulence)
EPOGMPAJ_02131 PHI:10648 katA 73.2 1.1e-214 3 475 0.9834 0.9793 rodents opportunistic infection catalase unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PEBPCGKJ_00025 AVA35359.1|GH2 100 0 1 856 1 1
PEBPCGKJ_00038 QGS32107.1|GT4 100 5.93e-298 1 410 1 1
PEBPCGKJ_00039 QGS32106.1|GT4 100 1.03e-281 1 381 1 1
PEBPCGKJ_00041 AVA35371.1|GT4 100 1.32e-306 1 420 1 1
PEBPCGKJ_00115 ABF12787.1|GT0 100 0 1 1009 1 0.9873
PEBPCGKJ_00260 QGS31911.1|GH73 100 2.01e-240 1 340 1 1
PEBPCGKJ_00510 CBF93828.1|GT51 100 0 1 684 1 0.9956
PEBPCGKJ_00513 ABF10863.1|GH3 100 0 1 774 1 1
PEBPCGKJ_00675 QGS32986.1|GH166 100 0 1 953 1 1
PEBPCGKJ_00680 QGS32991.1|GT4 100 0 1 529 1 1
PEBPCGKJ_00683 QGS32994.1|CBM50 100 0 1 556 1 1
PEBPCGKJ_00692 ABF11038.1|GT2 100 2.4e-275 1 380 1 1
PEBPCGKJ_00899 AVA34608.1|GT2 100 3.32e-187 1 250 1 1
PEBPCGKJ_01112 QGS33352.1|GT83 100 0 1 580 1 1
PEBPCGKJ_01115 QGS33355.1|GT2 100 8.8e-236 1 333 1 1
PEBPCGKJ_01217 QBP12626.1|GH23 100 4.19e-142 1 208 1 1
PEBPCGKJ_01282 QGS31444.1|GT2 100 0 1 868 1 1
PEBPCGKJ_01353 ABF11690.1|GT83|2.4.2.43 100 0 1 575 1 1
PEBPCGKJ_01361 QGS31518.1|GT51 100 0 1 838 1 1
PEBPCGKJ_01762 ABF12094.1|GT41 100 0 1 795 1 0.9975
PEBPCGKJ_02151 QGS32300.1|GT2 100 2.09e-266 1 356 1 1
PEBPCGKJ_02258 ABF12587.1|GT4 100 1e-245 1 332 1 1
PEBPCGKJ_02266 QGS32201.1|GT107 100 0 1 682 1 1
EPOGMPAJ_00025 AVA35359.1|GH2 100 0 1 856 1 1
EPOGMPAJ_00038 QGS32107.1|GT4 100 5.93e-298 1 410 1 1
EPOGMPAJ_00039 QGS32106.1|GT4 100 1.03e-281 1 381 1 1
EPOGMPAJ_00041 AVA35371.1|GT4 100 1.32e-306 1 420 1 1
EPOGMPAJ_00115 ABF12787.1|GT0 100 0 1 1009 1 0.9873
EPOGMPAJ_00260 QGS31911.1|GH73 100 2.01e-240 1 340 1 1
EPOGMPAJ_00510 CBF93828.1|GT51 100 0 1 684 1 0.9956
EPOGMPAJ_00513 ABF10863.1|GH3 100 0 1 774 1 1
EPOGMPAJ_00675 QGS32986.1|GH166 100 0 1 953 1 1
EPOGMPAJ_00680 QGS32991.1|GT4 100 0 1 529 1 1
EPOGMPAJ_00683 QGS32994.1|CBM50 100 0 1 556 1 1
EPOGMPAJ_00692 ABF11038.1|GT2 100 2.4e-275 1 380 1 1
EPOGMPAJ_00899 AVA34608.1|GT2 100 3.32e-187 1 250 1 1
EPOGMPAJ_01112 QGS33352.1|GT83 100 0 1 580 1 1
EPOGMPAJ_01115 QGS33355.1|GT2 100 8.8e-236 1 333 1 1
EPOGMPAJ_01217 QBP12626.1|GH23 100 4.19e-142 1 208 1 1
EPOGMPAJ_01282 QGS31444.1|GT2 100 0 1 868 1 1
EPOGMPAJ_01353 ABF11690.1|GT83|2.4.2.43 100 0 1 575 1 1
EPOGMPAJ_01361 QGS31518.1|GT51 100 0 1 838 1 1
EPOGMPAJ_01762 ABF12094.1|GT41 100 0 1 795 1 0.9975
EPOGMPAJ_02151 QGS32300.1|GT2 100 2.09e-266 1 356 1 1
EPOGMPAJ_02258 ABF12587.1|GT4 100 1e-245 1 332 1 1
EPOGMPAJ_02266 QGS32201.1|GT107 100 0 1 682 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
PEBPCGKJ_00084 2.A.14.1.2 70.6 3.3e-215 1 564 0.9965 0.9964 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.14 The Lactate Permease (LctP) Family
PEBPCGKJ_00094 2.A.1.6.3 79.4 9.9e-191 10 436 0.9771 0.9953 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
PEBPCGKJ_00166 1.B.20.2.2 73.9 1.7e-243 1 558 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.20 The Two-Partner Secretion (TPS) Family
PEBPCGKJ_00276 9.B.154.1.4 99.2 2.4e-64 22 150 0.8600 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.154 The Putative Holin-2 (PH-2) Family
PEBPCGKJ_00381 2.A.51.1.1 87 4.4e-190 5 390 0.9897 0.9626 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
PEBPCGKJ_00393 9.B.143.3.3 99.6 8.6e-145 1 268 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.143 The 6 TMS DUF1275/Pf06912 (DUF1275) Family
PEBPCGKJ_00443 2.A.6.2.6 70.6 5.8e-142 1 384 0.9922 0.9843 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_00444 2.A.6.2.6 81.7 0 1 1045 0.9971 2.7285 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_00482 2.A.80.1.3 75.9 4.9e-210 1 500 1.0000 2.5533 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.80 The Tricarboxylate Transporter (TTT) Family
PEBPCGKJ_00818 2.A.23.1.10 72.6 1.6e-167 7 419 0.9137 0.9302 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
PEBPCGKJ_00987 2.A.6.1.2 80.8 0 1 1037 0.9942 0.9755 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_00991 2.A.53.3.1 75.4 2.6e-200 1 491 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
PEBPCGKJ_01125 2.A.53.3.1 75.4 2.6e-200 1 491 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
PEBPCGKJ_01147 9.B.32.1.6 79.6 2.5e-49 18 125 0.8308 0.7941 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.32 The DUF3302 or Pfam11742 (YibI) Family
PEBPCGKJ_01188 9.B.143.3.6 99.7 4.5e-211 1 386 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.143 The 6 TMS DUF1275/Pf06912 (DUF1275) Family
PEBPCGKJ_01356 2.A.51.1.7 72.8 1.8e-149 17 383 0.8995 0.9434 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
PEBPCGKJ_01392 2.A.6.2.44 75.7 0 19 1071 0.9741 2.5887 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_01455 2.A.3.1.2 75.4 2e-211 1 488 0.9569 0.9877 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
PEBPCGKJ_01461 2.A.40.7.7 73.2 8.3e-172 17 460 0.9652 0.9758 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
PEBPCGKJ_01574 2.A.3.1.9 72.2 9.8e-181 2 449 0.9739 0.9615 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
PEBPCGKJ_01827 3.A.6.2.1 74.7 5.4e-91 22 262 0.9129 0.9091 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
PEBPCGKJ_01845 2.A.6.1.17 100 0 1 1045 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_01854 2.A.6.1.6 100 8.9e-276 1 511 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_01855 2.A.6.1.6 100 0 1 1039 1.0000 2.0333 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_01856 2.A.6.1.6 100 5.6e-214 1 385 1.0000 0.7534 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
PEBPCGKJ_02310 2.A.21.7.5 74.3 3.7e-219 7 553 0.9892 0.9844 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
EPOGMPAJ_00084 2.A.14.1.2 70.6 3.3e-215 1 564 0.9965 0.9964 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.14 The Lactate Permease (LctP) Family
EPOGMPAJ_00094 2.A.1.6.3 79.4 9.9e-191 10 436 0.9771 0.9953 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
EPOGMPAJ_00166 1.B.20.2.2 73.9 1.7e-243 1 558 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.20 The Two-Partner Secretion (TPS) Family
EPOGMPAJ_00276 9.B.154.1.4 99.2 2.4e-64 22 150 0.8600 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.154 The Putative Holin-2 (PH-2) Family
EPOGMPAJ_00381 2.A.51.1.1 87 4.4e-190 5 390 0.9897 0.9626 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
EPOGMPAJ_00393 9.B.143.3.3 99.6 8.6e-145 1 268 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.143 The 6 TMS DUF1275/Pf06912 (DUF1275) Family
EPOGMPAJ_00443 2.A.6.2.6 70.6 5.8e-142 1 384 0.9922 0.9843 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_00444 2.A.6.2.6 81.7 0 1 1045 0.9971 2.7285 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_00482 2.A.80.1.3 75.9 4.9e-210 1 500 1.0000 2.5533 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.80 The Tricarboxylate Transporter (TTT) Family
EPOGMPAJ_00818 2.A.23.1.10 72.6 1.6e-167 7 419 0.9137 0.9302 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
EPOGMPAJ_00987 2.A.6.1.2 80.8 0 1 1037 0.9942 0.9755 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_00991 2.A.53.3.1 75.4 2.6e-200 1 491 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
EPOGMPAJ_01125 2.A.53.3.1 75.4 2.6e-200 1 491 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
EPOGMPAJ_01147 9.B.32.1.6 79.6 2.5e-49 18 125 0.8308 0.7941 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.32 The DUF3302 or Pfam11742 (YibI) Family
EPOGMPAJ_01188 9.B.143.3.6 99.7 4.5e-211 1 386 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.143 The 6 TMS DUF1275/Pf06912 (DUF1275) Family
EPOGMPAJ_01356 2.A.51.1.7 72.8 1.8e-149 17 383 0.8995 0.9434 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
EPOGMPAJ_01392 2.A.6.2.44 75.7 0 19 1071 0.9741 2.5887 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_01455 2.A.3.1.2 75.4 2e-211 1 488 0.9569 0.9877 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
EPOGMPAJ_01461 2.A.40.7.7 73.2 8.3e-172 17 460 0.9652 0.9758 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
EPOGMPAJ_01574 2.A.3.1.9 72.2 9.8e-181 2 449 0.9739 0.9615 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
EPOGMPAJ_01827 3.A.6.2.1 74.7 5.4e-91 22 262 0.9129 0.9091 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
EPOGMPAJ_01845 2.A.6.1.17 100 0 1 1045 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_01854 2.A.6.1.6 100 8.9e-276 1 511 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_01855 2.A.6.1.6 100 0 1 1039 1.0000 2.0333 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_01856 2.A.6.1.6 100 5.6e-214 1 385 1.0000 0.7534 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
EPOGMPAJ_02310 2.A.21.7.5 74.3 3.7e-219 7 553 0.9892 0.9844 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family