Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C315
  Reference Plasmid   NC_014233.1
  Reference Plasmid Size   55709
  Reference Plasmid GC Content   0.48
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0152819 PANEHBEB_00037 28568 5 Gut 0.20 protein_coding missense_variant MODERATE 893A>G Asn298Ser
M0152820 PANEHBEB_00049 39487 3 Gut 0.12 protein_coding synonymous_variant LOW 297G>A Leu99Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
PANEHBEB_00036 VFG042769 Adhesive fimbriae 100 5.7e-160 1 284 1.0 1 Adherence LngP prediction
PANEHBEB_00037 VFG042768 Adhesive fimbriae 99.2 8.4e-220 1 373 1.0 1 Adherence LngJ prediction
PANEHBEB_00038 VFG042781 Adhesive fimbriae 95.9 2.3e-179 1 341 1.0 1 Adherence CofI prediction
PANEHBEB_00039 VFG042766 Adhesive fimbriae 100 1.1e-262 67 510 0.8706 1 Adherence LngH prediction
PANEHBEB_00040 VFG042765 Adhesive fimbriae 100 3e-81 1 161 1.0 1 Adherence LngG prediction
PANEHBEB_00041 VFG042764 Adhesive fimbriae 100 4.7e-143 1 256 0.9309 0.9961 Adherence LngF prediction
PANEHBEB_00042 VFG042763 Adhesive fimbriae 100 2.5e-103 1 186 1.0 1 Adherence LngE prediction
PANEHBEB_00043 VFG042762 Adhesive fimbriae 100 3e-270 1 485 1.0 0.9858 Adherence LngD prediction
PANEHBEB_00044 VFG042761 Adhesive fimbriae 100 2.4e-71 1 137 1.0 1 Adherence LngC prediction
PANEHBEB_00045 VFG042760 Adhesive fimbriae 100 1.2e-301 1 523 1.0 1 Adherence LngB prediction
PANEHBEB_00046 VFG042759 Adhesive fimbriae 98.7 1e-122 1 236 1.0 1 Adherence LngA prediction
PANEHBEB_00047 VFG042758 Adhesive fimbriae 100 5.6e-35 1 73 1.0 1 Adherence LngX2 prediction
PANEHBEB_00048 VFG042757 Adhesive fimbriae 100 5.5e-82 1 147 1.0 1 Adherence LngT prediction
PANEHBEB_00049 VFG042756 Adhesive fimbriae 100 2.4e-169 1 298 1.0 1 Adherence LngS prediction
PANEHBEB_00050 VFG042755 Adhesive fimbriae 100 1.5e-54 1 101 1.0 1 Adherence LngR prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PANEHBEB_00048 AOT35488.1|GH23 100 7.36e-104 1 147 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term