Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C316
  Reference Plasmid   NC_014824.1
  Reference Plasmid Size   420706
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0152821 NGLPANHG_00185 193829 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1139A>T None
M0152822 NGLPANHG_00187 193959 7 Gut 1.00 protein_coding missense_variant MODERATE 1573T>C Ser525Pro
M0152823 NGLPANHG_00187 194050 7 Gut 1.00 protein_coding synonymous_variant LOW 1482G>T Val494Val
M0152824 NGLPANHG_00187 194134 7 Gut 1.00 protein_coding synonymous_variant LOW 1398T>C Gly466Gly
M0152825 NGLPANHG_00187 194217 7 Gut 1.00 protein_coding missense_variant MODERATE 1315C>T Leu439Phe
M0152826 NGLPANHG_00187 194257 7 Gut 1.00 protein_coding synonymous_variant LOW 1275T>A Val425Val
M0152827 NGLPANHG_00187 194269 7 Gut 1.00 protein_coding synonymous_variant LOW 1263C>T Ile421Ile
M0152828 NGLPANHG_00187 194374 7 Gut 1.00 protein_coding synonymous_variant LOW 1158G>A Pro386Pro
M0152829 NGLPANHG_00187 194542 7 Gut 1.00 protein_coding missense_variant MODERATE 990A>C Leu330Phe
M0152830 NGLPANHG_00187 194580 7 Gut 1.00 protein_coding missense_variant MODERATE 952T>C Tyr318His
M0152831 NGLPANHG_00187 194845 7 Gut 1.00 protein_coding synonymous_variant LOW 687G>A Ala229Ala
M0152832 NGLPANHG_00187 194888 7 Gut 1.00 protein_coding missense_variant MODERATE 644C>T Thr215Ile
M0152833 NGLPANHG_00187 194953 7 Gut 1.00 protein_coding synonymous_variant LOW 579T>C His193His
M0152834 NGLPANHG_00187 194995 7 Gut 1.00 protein_coding synonymous_variant LOW 537T>A Ile179Ile
M0152835 NGLPANHG_00187 195163 7 Gut 1.00 protein_coding synonymous_variant LOW 369A>G Leu123Leu
M0152836 NGLPANHG_00187 195343 7 Gut 1.00 protein_coding synonymous_variant LOW 189C>T Asn63Asn
M0152837 NGLPANHG_00187 195374 7 Gut 1.00 protein_coding missense_variant MODERATE 158G>A Arg53Gln
M0152838 NGLPANHG_00187 195399 7 Gut 1.00 protein_coding missense_variant MODERATE 133T>G Ser45Ala
M0152839 NGLPANHG_00187 195403 7 Gut 1.00 protein_coding missense_variant MODERATE 129C>A Asn43Lys
M0152840 NGLPANHG_00187 195424 7 Gut 1.00 protein_coding synonymous_variant LOW 108T>C Arg36Arg
M0152841 NGLPANHG_00187 195439 7 Gut 1.00 protein_coding synonymous_variant LOW 93C>A Thr31Thr
M0152842 NGLPANHG_00187 195442 7 Gut 1.00 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0152843 NGLPANHG_00187 195445 7 Gut 1.00 protein_coding synonymous_variant LOW 87A>G Ala29Ala
M0152844 NGLPANHG_00187 195464 7 Gut 1.00 protein_coding missense_variant MODERATE 68G>A Gly23Asp
M0152845 NGLPANHG_00187 195475 7 Gut 1.00 protein_coding synonymous_variant LOW 57C>T Leu19Leu
M0152846 NGLPANHG_00187 195519 7 Gut 1.00 protein_coding missense_variant MODERATE 13A>T Ile5Phe
M0152847 NGLPANHG_00185 195626 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -2936C>T None
M0152848 NGLPANHG_00185 195639 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -2949T>C None
M0152849 NGLPANHG_00185 195663 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -2973T>G None
M0152850 NGLPANHG_00185 195673 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -2983G>A None
M0152851 NGLPANHG_00185 195681 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -2991C>T None
M0152852 NGLPANHG_00188 195823 6 Gut 0.86 protein_coding missense_variant MODERATE 84A>C Leu28Phe
M0152853 NGLPANHG_00188 195854 6 Gut 0.86 protein_coding missense_variant MODERATE 115G>A Glu39Lys
M0152854 NGLPANHG_00188 195877 6 Gut 0.86 protein_coding synonymous_variant LOW 138T>C Asn46Asn
M0152855 NGLPANHG_00188 195895 6 Gut 0.86 protein_coding synonymous_variant LOW 156G>A Leu52Leu
M0152856 NGLPANHG_00188 195908 6 Gut 0.86 protein_coding missense_variant MODERATE 169T>A Leu57Ile
M0152857 NGLPANHG_00188 195928 6 Gut 0.86 protein_coding synonymous_variant LOW 189T>C Gly63Gly
M0152858 NGLPANHG_00188 195937 6 Gut 0.86 protein_coding synonymous_variant LOW 198T>C Tyr66Tyr
M0152859 NGLPANHG_00188 195961 6 Gut 0.86 protein_coding synonymous_variant LOW 222A>T Ile74Ile
M0152860 NGLPANHG_00188 196147 6 Gut 0.86 protein_coding synonymous_variant LOW 408C>T Asp136Asp
M0152861 NGLPANHG_00188 196153 4 Gut 0.57 protein_coding synonymous_variant LOW 414C>T Phe138Phe
M0152862 NGLPANHG_00188 196585 6 Gut 0.86 protein_coding synonymous_variant LOW 846A>G Leu282Leu
M0152863 NGLPANHG_00188 196712 4 Gut 0.57 protein_coding missense_variant MODERATE 973A>G Asn325Asp
M0152864 NGLPANHG_00188 196731 6 Gut 0.86 protein_coding missense_variant MODERATE 992C>G Thr331Ser
M0152865 NGLPANHG_00188 196814 6 Gut 0.86 protein_coding missense_variant MODERATE 1075A>G Ile359Val
M0152866 NGLPANHG_00188 196948 5 Gut 0.71 protein_coding synonymous_variant LOW 1209G>A Ser403Ser
M0152867 NGLPANHG_00188 197053 5 Gut 0.71 protein_coding missense_variant MODERATE 1314C>A Asp438Glu
M0152868 NGLPANHG_00188 197095 5 Gut 0.71 protein_coding synonymous_variant LOW 1356T>C His452His
M0152869 NGLPANHG_00188 197107 5 Gut 0.71 protein_coding synonymous_variant LOW 1368A>T Thr456Thr
M0152870 NGLPANHG_00188 197116 6 Gut 0.86 protein_coding synonymous_variant LOW 1377T>C Gly459Gly
M0152871 NGLPANHG_00188 197209 6 Gut 0.86 protein_coding synonymous_variant LOW 1470A>G Leu490Leu
M0152872 NGLPANHG_00188 197213 6 Gut 0.86 protein_coding missense_variant MODERATE 1474A>T Met492Leu
M0152873 NGLPANHG_00188 197227 5 Gut 0.71 protein_coding synonymous_variant LOW 1488T>C Phe496Phe
M0152874 NGLPANHG_00188 197260 5 Gut 0.71 protein_coding synonymous_variant LOW 1521A>G Glu507Glu
M0152875 NGLPANHG_00188 197266 5 Gut 0.71 protein_coding synonymous_variant LOW 1527A>G Thr509Thr
M0152876 NGLPANHG_00188 197278 6 Gut 0.86 protein_coding synonymous_variant LOW 1539T>C Asp513Asp
M0152877 NGLPANHG_00188 197303 6 Gut 0.86 protein_coding missense_variant MODERATE 1564G>A Ala522Thr
M0152878 NGLPANHG_00188 197316 5 Gut 0.71 protein_coding missense_variant MODERATE 1577G>A Ser526Asn
M0152879 NGLPANHG_00188 197317 5 Gut 0.71 protein_coding synonymous_variant LOW 1578C>T Ser526Ser
M0152880 NGLPANHG_00189 197601 5 Gut 0.71 protein_coding missense_variant MODERATE 37G>C Glu13Gln
M0152881 NGLPANHG_00189 197633 5 Gut 0.71 protein_coding synonymous_variant LOW 69G>T Pro23Pro
M0152882 NGLPANHG_00189 197702 5 Gut 0.71 protein_coding synonymous_variant LOW 138T>C Pro46Pro
M0152883 NGLPANHG_00189 197703 5 Gut 0.71 protein_coding missense_variant MODERATE 139T>C Tyr47His
M0152884 NGLPANHG_00189 197739 5 Gut 0.71 protein_coding missense_variant MODERATE 175A>G Lys59Glu
M0152885 NGLPANHG_00189 197814 5 Gut 0.71 protein_coding missense_variant MODERATE 250A>G Asn84Asp
M0152886 NGLPANHG_00189 197831 5 Gut 0.71 protein_coding synonymous_variant LOW 267C>T Ile89Ile
M0152887 NGLPANHG_00189 197882 5 Gut 0.71 protein_coding synonymous_variant LOW 318A>C Leu106Leu
M0152888 NGLPANHG_00189 197978 5 Gut 0.71 protein_coding synonymous_variant LOW 414T>A Ala138Ala
M0152889 NGLPANHG_00189 198008 6 Gut 0.86 protein_coding synonymous_variant LOW 444T>C Ser148Ser
M0152890 NGLPANHG_00189 198011 5 Gut 0.71 protein_coding synonymous_variant LOW 447A>G Ser149Ser
M0152891 NGLPANHG_00189 198051 6 Gut 0.86 protein_coding synonymous_variant LOW 487T>C Leu163Leu
M0152892 NGLPANHG_00189 198061 6 Gut 0.86 protein_coding missense_variant MODERATE 497G>A Arg166Lys
M0152893 NGLPANHG_00189 198065 6 Gut 0.86 protein_coding synonymous_variant LOW 501A>G Thr167Thr
M0152894 NGLPANHG_00190 198242 5 Gut 0.71 protein_coding missense_variant MODERATE 163A>G Thr55Ala
M0152895 NGLPANHG_00190 198280 6 Gut 0.86 protein_coding synonymous_variant LOW 201C>T Pro67Pro
M0152896 NGLPANHG_00190 198342 6 Gut 0.86 protein_coding missense_variant MODERATE 263T>C Val88Ala
M0152897 NGLPANHG_00190 198409 6 Gut 0.86 protein_coding missense_variant MODERATE 330G>A Met110Ile
M0152898 NGLPANHG_00190 198492 6 Gut 0.86 protein_coding missense_variant MODERATE 413A>G Glu138Gly
M0152899 NGLPANHG_00190 198577 6 Gut 0.86 protein_coding synonymous_variant LOW 498T>C Tyr166Tyr
M0152900 NGLPANHG_00190 198579 6 Gut 0.86 protein_coding missense_variant MODERATE 500C>T Thr167Ile
M0152901 NGLPANHG_00190 198580 6 Gut 0.86 protein_coding synonymous_variant LOW 501T>C Thr167Thr
M0152902 NGLPANHG_00190 198631 5 Gut 0.71 protein_coding synonymous_variant LOW 552C>T Asp184Asp
M0152903 NGLPANHG_00190 198640 5 Gut 0.71 protein_coding synonymous_variant LOW 561A>G Thr187Thr
M0152904 NGLPANHG_00191 198689 5 Gut 0.71 protein_coding synonymous_variant LOW 30T>C Gly10Gly
M0152905 NGLPANHG_00191 198705 6 Gut 0.86 protein_coding missense_variant MODERATE 46T>G Phe16Val
M0152906 NGLPANHG_00191 198740 6 Gut 0.86 protein_coding synonymous_variant LOW 81A>G Glu27Glu
M0152907 NGLPANHG_00191 198799 6 Gut 0.86 protein_coding missense_variant MODERATE 140T>C Val47Ala
M0152908 NGLPANHG_00191 198810 6 Gut 0.86 protein_coding missense_variant MODERATE 151T>C Phe51Leu
M0152909 NGLPANHG_00191 198824 5 Gut 0.71 protein_coding synonymous_variant LOW 165T>C Pro55Pro
M0152910 NGLPANHG_00191 198854 6 Gut 0.86 protein_coding synonymous_variant LOW 195T>C Tyr65Tyr
M0152911 NGLPANHG_00191 198865 5 Gut 0.71 protein_coding missense_variant MODERATE 206T>C Val69Ala
M0152912 NGLPANHG_00191 198870 6 Gut 0.86 protein_coding synonymous_variant LOW 211T>C Leu71Leu
M0152913 NGLPANHG_00191 198905 5 Gut 0.71 protein_coding synonymous_variant LOW 246A>G Ala82Ala
M0152914 NGLPANHG_00191 198917 5 Gut 0.71 protein_coding synonymous_variant LOW 258C>T Ile86Ile
M0152915 NGLPANHG_00191 198926 5 Gut 0.71 protein_coding synonymous_variant LOW 267T>C Leu89Leu
M0152916 NGLPANHG_00191 198944 6 Gut 0.86 protein_coding synonymous_variant LOW 285A>T Ala95Ala
M0152917 NGLPANHG_00191 198989 6 Gut 0.86 protein_coding synonymous_variant LOW 330T>C Gly110Gly
M0152918 NGLPANHG_00191 198992 6 Gut 0.86 protein_coding synonymous_variant LOW 333G>T Gly111Gly
M0152919 NGLPANHG_00191 199013 5 Gut 0.71 protein_coding synonymous_variant LOW 354G>A Ser118Ser
M0152920 NGLPANHG_00191 199028 5 Gut 0.71 protein_coding synonymous_variant LOW 369A>T Ile123Ile
M0152921 NGLPANHG_00191 199037 5 Gut 0.71 protein_coding synonymous_variant LOW 378T>C Val126Val
M0152922 NGLPANHG_00191 199046 5 Gut 0.71 protein_coding synonymous_variant LOW 387C>T Ile129Ile
M0152923 NGLPANHG_00191 199061 5 Gut 0.71 protein_coding synonymous_variant LOW 402T>C Phe134Phe
M0152924 NGLPANHG_00191 199064 5 Gut 0.71 protein_coding synonymous_variant LOW 405G>A Val135Val
M0152925 NGLPANHG_00191 199070 6 Gut 0.86 protein_coding synonymous_variant LOW 411A>C Leu137Leu
M0152926 NGLPANHG_00191 199076 5 Gut 0.71 protein_coding synonymous_variant LOW 417T>C Thr139Thr
M0152927 NGLPANHG_00191 199115 5 Gut 0.71 protein_coding synonymous_variant LOW 456A>T Ala152Ala
M0152928 NGLPANHG_00191 199139 5 Gut 0.71 protein_coding synonymous_variant LOW 480T>A Thr160Thr
M0152929 NGLPANHG_00191 199154 6 Gut 0.86 protein_coding synonymous_variant LOW 495A>T Ser165Ser
M0152930 NGLPANHG_00191 199193 6 Gut 0.86 protein_coding synonymous_variant LOW 534T>C Ser178Ser
M0152931 NGLPANHG_00191 199217 5 Gut 0.71 protein_coding synonymous_variant LOW 558T>C Tyr186Tyr
M0152932 NGLPANHG_00191 199223 6 Gut 0.86 protein_coding synonymous_variant LOW 564A>T Thr188Thr
M0152933 NGLPANHG_00191 199250 6 Gut 0.86 protein_coding synonymous_variant LOW 591T>C Thr197Thr
M0152934 NGLPANHG_00191 199253 5 Gut 0.71 protein_coding synonymous_variant LOW 594A>T Ser198Ser
M0152935 NGLPANHG_00191 199278 5 Gut 0.71 protein_coding missense_variant MODERATE 619T>C Tyr207His
M0152936 NGLPANHG_00191 199279 6 Gut 0.86 protein_coding missense_variant MODERATE 620A>T Tyr207Phe
M0152937 NGLPANHG_00191 199292 5 Gut 0.71 protein_coding synonymous_variant LOW 633A>G Lys211Lys
M0152938 NGLPANHG_00191 199295 6 Gut 0.86 protein_coding synonymous_variant LOW 636G>A Glu212Glu
M0152939 NGLPANHG_00191 199307 5 Gut 0.71 protein_coding synonymous_variant LOW 648T>C Gly216Gly
M0152940 NGLPANHG_00191 199319 5 Gut 0.71 protein_coding synonymous_variant LOW 660G>A Lys220Lys
M0152941 NGLPANHG_00191 199325 6 Gut 0.86 protein_coding synonymous_variant LOW 666T>A Ala222Ala
M0152942 NGLPANHG_00191 199330 6 Gut 0.86 protein_coding missense_variant MODERATE 671T>C Ile224Thr
M0152943 NGLPANHG_00191 199352 6 Gut 0.86 protein_coding synonymous_variant LOW 693A>G Lys231Lys
M0152944 NGLPANHG_00191 199427 6 Gut 0.86 protein_coding synonymous_variant LOW 768T>C Phe256Phe
M0152945 NGLPANHG_00191 199445 6 Gut 0.86 protein_coding synonymous_variant LOW 786C>T Ile262Ile
M0152946 NGLPANHG_00191 199448 5 Gut 0.71 protein_coding synonymous_variant LOW 789C>A Pro263Pro
M0152947 NGLPANHG_00191 199454 6 Gut 0.86 protein_coding synonymous_variant LOW 795G>A Glu265Glu
M0152948 NGLPANHG_00191 199520 6 Gut 0.86 protein_coding synonymous_variant LOW 861C>T Arg287Arg
M0152949 NGLPANHG_00191 199556 6 Gut 0.86 protein_coding synonymous_variant LOW 897T>C Ala299Ala
M0152950 NGLPANHG_00191 199559 5 Gut 0.71 protein_coding synonymous_variant LOW 900C>T Ser300Ser
M0152951 NGLPANHG_00191 199574 5 Gut 0.71 protein_coding synonymous_variant LOW 915G>T Ala305Ala
M0152952 NGLPANHG_00191 199637 6 Gut 0.86 protein_coding synonymous_variant LOW 978T>C Asp326Asp
M0152953 NGLPANHG_00191 199646 6 Gut 0.86 protein_coding synonymous_variant LOW 987A>G Lys329Lys
M0152954 NGLPANHG_00191 199664 6 Gut 0.86 protein_coding synonymous_variant LOW 1005T>C Ile335Ile
M0152955 NGLPANHG_00189 197627 4 Gut 0.57 protein_coding missense_variant MODERATE 63A>C Arg21Ser
M0152956 NGLPANHG_00190 198268 5 Gut 0.71 protein_coding missense_variant MODERATE 189T>G Ile63Met






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NGLPANHG_00048 ADU23792.1|CBM13|CBM37 100 0 1 893 1 1
NGLPANHG_00074 ADU23819.1|CBM37 100 4.21e-217 1 508 1 1
NGLPANHG_00076 ADU23820.1|CBM37 100 1.58e-171 1 481 1 1
NGLPANHG_00077 ADU23821.1|CBM37|CBM62|GH30_5 100 0 1 891 1 1
NGLPANHG_00112 ADU23841.1|CBM37 100 1.72e-103 1 794 1 1
NGLPANHG_00260 ADU23970.1|GT2 100 4.52e-177 1 243 1 1
NGLPANHG_00328 ADU24036.1|GT4 100 1.11e-299 1 404 1 1
NGLPANHG_00332 ADU24040.1|GT4 100 5.1e-262 1 355 1 1
NGLPANHG_00340 ADU24048.1|GT2 100 1.31e-242 1 325 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
NGLPANHG_00382 8.A.42.1.3 100 1.7e-59 1 109 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.42 The small hydrophilic YodL domain/protein (YodL) Family