Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C6
  Reference Plasmid   NC_022111.1
  Reference Plasmid Size   1770419
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0140565 FGFLILKC_00836 999603 3 Oral 0.06 protein_coding synonymous_variant LOW 309T>C Gly103Gly
M0140566 FGFLILKC_00837 1000106 4 Oral 0.08 protein_coding missense_variant MODERATE 1373T>C Ile458Thr
M0140567 FGFLILKC_00838 1001976 4 Oral 0.08 protein_coding missense_variant MODERATE 946A>G Met316Val
M0140568 FGFLILKC_00838 1002589 4 Oral 0.08 protein_coding synonymous_variant LOW 333T>C Ser111Ser
M0140569 FGFLILKC_00839 1004098 4 Oral 0.08 protein_coding missense_variant MODERATE 1669T>C Tyr557His
M0140570 FGFLILKC_00839 1005614 3 Oral 0.06 protein_coding synonymous_variant LOW 153C>T Pro51Pro
M0140571 FGFLILKC_00839 1005639 4 Oral 0.08 protein_coding missense_variant MODERATE 128T>C Ile43Thr
M0140572 FGFLILKC_00837 1005821 4 Oral 0.08 protein_coding upstream_gene_variant MODIFIER -4343A>G None
M0140573 FGFLILKC_00836 999772 3 Oral 0.06 protein_coding missense_variant MODERATE 140G>A Arg47His
M0140574 FGFLILKC_01032 1277392 3 Oral 0.06 protein_coding synonymous_variant LOW 1959C>T Val653Val
M0140575 FGFLILKC_01032 1277404 3 Oral 0.06 protein_coding synonymous_variant LOW 1947A>T Ala649Ala
M0140576 FGFLILKC_01032 1277473 3 Oral 0.06 protein_coding synonymous_variant LOW 1878C>T Ala626Ala
M0140577 FGFLILKC_01032 1277476 3 Oral 0.06 protein_coding synonymous_variant LOW 1875C>T Leu625Leu
M0140578 FGFLILKC_01032 1277485 3 Oral 0.06 protein_coding synonymous_variant LOW 1866A>G Ser622Ser
M0140579 FGFLILKC_01032 1277595 3 Oral 0.06 protein_coding missense_variant MODERATE 1756A>G Ile586Val
M0140580 FGFLILKC_01032 1277604 3 Oral 0.06 protein_coding missense_variant MODERATE 1747G>T Val583Leu
M0140581 FGFLILKC_01032 1277607 3 Oral 0.06 protein_coding synonymous_variant LOW 1744C>T Leu582Leu
M0140582 FGFLILKC_01032 1277608 3 Oral 0.06 protein_coding synonymous_variant LOW 1743T>C Ser581Ser
M0140583 FGFLILKC_01032 1277617 3 Oral 0.06 protein_coding synonymous_variant LOW 1734T>C Ala578Ala
M0140584 FGFLILKC_01032 1277619 3 Oral 0.06 protein_coding missense_variant MODERATE 1732G>A Ala578Thr
M0140585 FGFLILKC_01032 1277728 3 Oral 0.06 protein_coding synonymous_variant LOW 1623T>C Ile541Ile
M0140586 FGFLILKC_01032 1277731 3 Oral 0.06 protein_coding synonymous_variant LOW 1620A>C Thr540Thr
M0140587 FGFLILKC_01032 1277732 3 Oral 0.06 protein_coding missense_variant MODERATE 1619C>T Thr540Ile
M0140588 FGFLILKC_01032 1277768 3 Oral 0.06 protein_coding missense_variant MODERATE 1583A>G Gln528Arg
M0140589 FGFLILKC_01032 1277806 3 Oral 0.06 protein_coding synonymous_variant LOW 1545T>C Asp515Asp
M0140590 FGFLILKC_01032 1277842 3 Oral 0.06 protein_coding synonymous_variant LOW 1509A>G Lys503Lys
M0140591 FGFLILKC_01032 1277926 3 Oral 0.06 protein_coding synonymous_variant LOW 1425T>C Asn475Asn
M0140592 FGFLILKC_01032 1277953 3 Oral 0.06 protein_coding missense_variant MODERATE 1398C>A Phe466Leu
M0140593 FGFLILKC_01032 1277964 3 Oral 0.06 protein_coding missense_variant MODERATE 1387T>A Phe463Ile
M0140594 FGFLILKC_01032 1276693 3 Oral 0.06 protein_coding synonymous_variant LOW 2658G>A Val886Val
M0140595 FGFLILKC_01032 1276849 3 Oral 0.06 protein_coding synonymous_variant LOW 2502C>T Gly834Gly
M0140596 FGFLILKC_01032 1276865 3 Oral 0.06 protein_coding missense_variant MODERATE 2486G>A Gly829Asp
M0140597 FGFLILKC_01032 1276866 3 Oral 0.06 protein_coding missense_variant MODERATE 2485G>A Gly829Ser
M0140598 FGFLILKC_01032 1276938 3 Oral 0.06 protein_coding missense_variant MODERATE 2413A>G Lys805Glu
M0140599 FGFLILKC_01032 1277020 3 Oral 0.06 protein_coding synonymous_variant LOW 2331C>T Asp777Asp
M0140600 FGFLILKC_01032 1277025 3 Oral 0.06 protein_coding missense_variant MODERATE 2326C>T Leu776Phe
M0140601 FGFLILKC_01032 1277167 3 Oral 0.06 protein_coding synonymous_variant LOW 2184C>T Asn728Asn
M0140602 FGFLILKC_01032 1277208 3 Oral 0.06 protein_coding missense_variant MODERATE 2143G>A Val715Ile
M0140603 FGFLILKC_01032 1277227 3 Oral 0.06 protein_coding synonymous_variant LOW 2124T>C Asn708Asn
M0140604 FGFLILKC_01032 1277241 3 Oral 0.06 protein_coding missense_variant MODERATE 2110A>G Ile704Val
M0140605 FGFLILKC_01032 1277293 3 Oral 0.06 protein_coding synonymous_variant LOW 2058A>T Gly686Gly
M0140606 FGFLILKC_01205 1491288 3 Oral 0.06 protein_coding synonymous_variant LOW 1260T>C Thr420Thr
M0140607 FGFLILKC_01205 1491330 3 Oral 0.06 protein_coding synonymous_variant LOW 1302G>T Arg434Arg
M0140608 FGFLILKC_01205 1491429 3 Oral 0.06 protein_coding synonymous_variant LOW 1401A>C Pro467Pro
M0140609 FGFLILKC_01205 1491432 3 Oral 0.06 protein_coding synonymous_variant LOW 1404T>C Cys468Cys
M0140610 FGFLILKC_01206 1492279 3 Oral 0.06 protein_coding synonymous_variant LOW 633A>C Leu211Leu
M0140611 FGFLILKC_01206 1492381 3 Oral 0.06 protein_coding synonymous_variant LOW 735T>C Leu245Leu
M0140612 FGFLILKC_01206 1492427 3 Oral 0.06 protein_coding missense_variant MODERATE 781A>G Thr261Ala
M0140613 FGFLILKC_01207 1492674 3 Oral 0.06 protein_coding synonymous_variant LOW 51C>T Gly17Gly
M0140614 FGFLILKC_01207 1492851 3 Oral 0.06 protein_coding synonymous_variant LOW 228C>T Leu76Leu
M0140615 FGFLILKC_01207 1492855 3 Oral 0.06 protein_coding missense_variant MODERATE 232T>G Ser78Ala
M0140616 FGFLILKC_00745 887448 3 Oral 0.06 protein_coding synonymous_variant LOW 327G>A Val109Val
M0140617 FGFLILKC_00745 887469 3 Oral 0.06 protein_coding synonymous_variant LOW 306G>A Val102Val
M0140618 FGFLILKC_00745 887541 3 Oral 0.06 protein_coding synonymous_variant LOW 234A>T Val78Val
M0140619 FGFLILKC_00745 887553 3 Oral 0.06 protein_coding synonymous_variant LOW 222A>T Ala74Ala
M0140620 FGFLILKC_00745 887555 3 Oral 0.06 protein_coding missense_variant MODERATE 220G>T Ala74Ser
M0140621 FGFLILKC_00745 887556 3 Oral 0.06 protein_coding synonymous_variant LOW 219T>C Gly73Gly
M0140622 FGFLILKC_00745 887595 3 Oral 0.06 protein_coding synonymous_variant LOW 180T>C Ser60Ser
M0140623 FGFLILKC_00745 887714 3 Oral 0.06 protein_coding synonymous_variant LOW 61A>C Arg21Arg
M0140624 FGFLILKC_00748 888297 3 Oral 0.06 protein_coding synonymous_variant LOW 786C>T Phe262Phe
M0140625 FGFLILKC_00748 888339 4 Oral 0.08 protein_coding missense_variant MODERATE 744A>C Arg248Ser
M0140626 FGFLILKC_00748 888393 3 Oral 0.06 protein_coding synonymous_variant LOW 690C>T Asp230Asp
M0140627 FGFLILKC_00748 888591 4 Oral 0.08 protein_coding synonymous_variant LOW 492C>T Gly164Gly
M0140628 FGFLILKC_00748 888597 4 Oral 0.08 protein_coding synonymous_variant LOW 486C>A Val162Val
M0140629 FGFLILKC_00748 888633 3 Oral 0.06 protein_coding synonymous_variant LOW 450C>A Arg150Arg
M0140630 FGFLILKC_00748 888651 3 Oral 0.06 protein_coding synonymous_variant LOW 432C>T Ile144Ile
M0140631 FGFLILKC_00748 888654 4 Oral 0.08 protein_coding synonymous_variant LOW 429C>T Gly143Gly
M0140632 FGFLILKC_00748 888690 4 Oral 0.08 protein_coding synonymous_variant LOW 393T>C Ile131Ile
M0140633 FGFLILKC_00748 888768 4 Oral 0.08 protein_coding synonymous_variant LOW 315G>A Glu105Glu
M0140634 FGFLILKC_00748 888966 4 Oral 0.08 protein_coding synonymous_variant LOW 117A>T Val39Val
M0140635 FGFLILKC_00748 888972 4 Oral 0.08 protein_coding synonymous_variant LOW 111G>A Val37Val
M0140636 FGFLILKC_00748 889003 4 Oral 0.08 protein_coding missense_variant MODERATE 80A>G Asn27Ser
M0140637 FGFLILKC_00748 889008 4 Oral 0.08 protein_coding missense_variant MODERATE 75T>G Ile25Met
M0140638 FGFLILKC_00749 889221 3 Oral 0.06 protein_coding synonymous_variant LOW 1230C>T Asn410Asn
M0140639 FGFLILKC_00749 889380 3 Oral 0.06 protein_coding synonymous_variant LOW 1071A>G Lys357Lys
M0140640 FGFLILKC_00749 889386 3 Oral 0.06 protein_coding synonymous_variant LOW 1065A>T Val355Val
M0140641 FGFLILKC_00749 889458 3 Oral 0.06 protein_coding synonymous_variant LOW 993T>C Asp331Asp
M0140642 FGFLILKC_00749 889476 3 Oral 0.06 protein_coding synonymous_variant LOW 975T>C Asn325Asn
M0140643 FGFLILKC_00749 889500 3 Oral 0.06 protein_coding synonymous_variant LOW 951T>C Arg317Arg
M0140644 FGFLILKC_00749 889509 3 Oral 0.06 protein_coding synonymous_variant LOW 942G>A Glu314Glu
M0140645 FGFLILKC_00749 889527 3 Oral 0.06 protein_coding synonymous_variant LOW 924G>A Glu308Glu
M0140646 FGFLILKC_00749 889545 3 Oral 0.06 protein_coding synonymous_variant LOW 906T>A Leu302Leu
M0140647 FGFLILKC_00749 889554 3 Oral 0.06 protein_coding synonymous_variant LOW 897T>C Ile299Ile
M0140648 FGFLILKC_00749 889596 3 Oral 0.06 protein_coding synonymous_variant LOW 855C>T His285His
M0140649 FGFLILKC_00749 889629 3 Oral 0.06 protein_coding synonymous_variant LOW 822T>A Thr274Thr
M0140650 FGFLILKC_00749 889656 3 Oral 0.06 protein_coding synonymous_variant LOW 795A>T Val265Val
M0140651 FGFLILKC_00749 889668 3 Oral 0.06 protein_coding synonymous_variant LOW 783T>A Ile261Ile
M0140652 FGFLILKC_00749 889680 3 Oral 0.06 protein_coding synonymous_variant LOW 771A>T Ala257Ala
M0140653 FGFLILKC_00749 889686 3 Oral 0.06 protein_coding synonymous_variant LOW 765C>T Gly255Gly
M0140654 FGFLILKC_00749 889716 3 Oral 0.06 protein_coding synonymous_variant LOW 735T>A Val245Val
M0140655 FGFLILKC_00749 889740 3 Oral 0.06 protein_coding synonymous_variant LOW 711C>T Asp237Asp
M0140656 FGFLILKC_00749 889743 3 Oral 0.06 protein_coding synonymous_variant LOW 708C>T Asn236Asn
M0140657 FGFLILKC_00749 889746 3 Oral 0.06 protein_coding synonymous_variant LOW 705T>C Phe235Phe
M0140658 FGFLILKC_00749 889779 3 Oral 0.06 protein_coding synonymous_variant LOW 672T>A Thr224Thr
M0140659 FGFLILKC_00749 889863 3 Oral 0.06 protein_coding synonymous_variant LOW 588A>T Ile196Ile
M0140660 FGFLILKC_00749 889962 3 Oral 0.06 protein_coding synonymous_variant LOW 489A>G Glu163Glu
M0140661 FGFLILKC_00749 889980 3 Oral 0.06 protein_coding synonymous_variant LOW 471T>C Pro157Pro
M0140662 FGFLILKC_00749 890008 3 Oral 0.06 protein_coding missense_variant MODERATE 443T>A Met148Lys
M0140663 FGFLILKC_00749 890037 3 Oral 0.06 protein_coding synonymous_variant LOW 414A>T Val138Val
M0140664 FGFLILKC_00749 890049 3 Oral 0.06 protein_coding synonymous_variant LOW 402T>A Val134Val
M0140665 FGFLILKC_00749 890094 3 Oral 0.06 protein_coding synonymous_variant LOW 357T>C Leu119Leu
M0140666 FGFLILKC_00951 1159809 4 Oral 0.08 protein_coding synonymous_variant LOW 2469A>G Glu823Glu
M0140667 FGFLILKC_00951 1159845 4 Oral 0.08 protein_coding synonymous_variant LOW 2505A>T Arg835Arg
M0140668 FGFLILKC_00951 1160139 4 Oral 0.08 protein_coding synonymous_variant LOW 2799T>C Asp933Asp
M0140669 FGFLILKC_00951 1160370 4 Oral 0.08 protein_coding synonymous_variant LOW 3030T>C Arg1010Arg
M0140670 FGFLILKC_00951 1160502 4 Oral 0.08 protein_coding synonymous_variant LOW 3162T>C Pro1054Pro
M0140671 FGFLILKC_00952 1160644 4 Oral 0.08 protein_coding synonymous_variant LOW 51A>T Ala17Ala
M0140672 FGFLILKC_00952 1161001 4 Oral 0.08 protein_coding synonymous_variant LOW 408C>T Ala136Ala
M0140673 FGFLILKC_00952 1161024 4 Oral 0.08 protein_coding missense_variant MODERATE 431G>A Arg144Lys
M0140674 FGFLILKC_00952 1161055 4 Oral 0.08 protein_coding synonymous_variant LOW 462T>C Cys154Cys
M0140675 FGFLILKC_00952 1161100 4 Oral 0.08 protein_coding synonymous_variant LOW 507T>A Pro169Pro
M0140676 FGFLILKC_00952 1161157 4 Oral 0.08 protein_coding synonymous_variant LOW 564T>C Pro188Pro
M0140677 FGFLILKC_00952 1161614 3 Oral 0.06 protein_coding synonymous_variant LOW 1021C>T Leu341Leu
M0140678 FGFLILKC_00952 1161616 3 Oral 0.06 protein_coding synonymous_variant LOW 1023A>G Leu341Leu
M0140679 FGFLILKC_00952 1161631 4 Oral 0.08 protein_coding missense_variant MODERATE 1038A>G Ile346Met
M0140680 FGFLILKC_00952 1161652 4 Oral 0.08 protein_coding synonymous_variant LOW 1059T>C Ile353Ile
M0140681 FGFLILKC_00952 1161655 4 Oral 0.08 protein_coding synonymous_variant LOW 1062T>C Asp354Asp
M0140682 FGFLILKC_00952 1161703 4 Oral 0.08 protein_coding synonymous_variant LOW 1110A>G Lys370Lys
M0140683 FGFLILKC_00952 1161724 4 Oral 0.08 protein_coding synonymous_variant LOW 1131T>G Val377Val
M0140684 FGFLILKC_00952 1161811 4 Oral 0.08 protein_coding synonymous_variant LOW 1218G>A Gln406Gln
M0140685 FGFLILKC_00952 1161824 3 Oral 0.06 protein_coding missense_variant MODERATE 1231T>A Ser411Thr
M0140686 FGFLILKC_00952 1161866 3 Oral 0.06 protein_coding missense_variant MODERATE 1273G>A Val425Ile
M0140687 FGFLILKC_00952 1161900 3 Oral 0.06 protein_coding missense_variant MODERATE 1307C>T Ala436Val
M0140688 FGFLILKC_00952 1161958 4 Oral 0.08 protein_coding synonymous_variant LOW 1365T>C His455His
M0140689 FGFLILKC_00953 1162182 3 Oral 0.06 protein_coding synonymous_variant LOW 36A>C Ala12Ala
M0140690 FGFLILKC_00953 1162183 3 Oral 0.06 protein_coding stop_gained HIGH 37C>T Gln13*
M0140691 FGFLILKC_00953 1162215 4 Oral 0.08 protein_coding synonymous_variant LOW 69T>C Asn23Asn
M0140692 FGFLILKC_00953 1162237 4 Oral 0.08 protein_coding missense_variant MODERATE 91T>C Phe31Leu
M0140693 FGFLILKC_00953 1162260 4 Oral 0.08 protein_coding synonymous_variant LOW 114T>C Ser38Ser
M0140694 FGFLILKC_00953 1162275 4 Oral 0.08 protein_coding synonymous_variant LOW 129A>C Gly43Gly
M0140695 FGFLILKC_00953 1162324 4 Oral 0.08 protein_coding missense_variant MODERATE 178A>G Ile60Val
M0140696 FGFLILKC_00953 1162362 3 Oral 0.06 protein_coding synonymous_variant LOW 216C>T Pro72Pro
M0140697 FGFLILKC_00953 1162408 3 Oral 0.06 protein_coding missense_variant MODERATE 262G>A Val88Ile
M0140698 FGFLILKC_00953 1162431 4 Oral 0.08 protein_coding missense_variant MODERATE 285T>G Asn95Lys
M0140699 FGFLILKC_00953 1162443 4 Oral 0.08 protein_coding synonymous_variant LOW 297T>C Asp99Asp
M0140700 FGFLILKC_00953 1162476 4 Oral 0.08 protein_coding synonymous_variant LOW 330G>A Leu110Leu
M0140701 FGFLILKC_00953 1162536 3 Oral 0.06 protein_coding synonymous_variant LOW 390C>T Leu130Leu
M0140702 FGFLILKC_00953 1162614 3 Oral 0.06 protein_coding synonymous_variant LOW 468T>A Pro156Pro
M0140703 FGFLILKC_00953 1162662 4 Oral 0.08 protein_coding synonymous_variant LOW 516T>C His172His
M0140704 FGFLILKC_00953 1162761 4 Oral 0.08 protein_coding synonymous_variant LOW 615T>C Tyr205Tyr
M0140705 FGFLILKC_00953 1162853 4 Oral 0.08 protein_coding missense_variant MODERATE 707G>A Ser236Asn
M0140706 FGFLILKC_00953 1162861 4 Oral 0.08 protein_coding missense_variant MODERATE 715G>C Ala239Pro
M0140707 FGFLILKC_00953 1162893 4 Oral 0.08 protein_coding synonymous_variant LOW 747A>T Thr249Thr
M0140708 FGFLILKC_00953 1162926 4 Oral 0.08 protein_coding synonymous_variant LOW 780T>C Ala260Ala
M0140709 FGFLILKC_00953 1162963 3 Oral 0.06 protein_coding missense_variant MODERATE 817G>A Asp273Asn
M0140710 FGFLILKC_00953 1163199 3 Oral 0.06 protein_coding synonymous_variant LOW 1053A>T Val351Val
M0140711 FGFLILKC_00953 1163214 4 Oral 0.08 protein_coding synonymous_variant LOW 1068T>C Phe356Phe
M0140712 FGFLILKC_00953 1163317 4 Oral 0.08 protein_coding missense_variant MODERATE 1171A>G Ile391Val
M0140713 FGFLILKC_00954 1163709 4 Oral 0.08 protein_coding upstream_gene_variant MODIFIER -8A>G None
M0140714 FGFLILKC_00954 1163752 3 Oral 0.06 protein_coding synonymous_variant LOW 36A>C Thr12Thr
M0140715 FGFLILKC_00954 1163768 4 Oral 0.08 protein_coding missense_variant MODERATE 52A>G Asn18Asp
M0140716 FGFLILKC_00954 1163802 4 Oral 0.08 protein_coding missense_variant MODERATE 86T>C Ile29Thr
M0140717 FGFLILKC_00954 1163804 3 Oral 0.06 protein_coding missense_variant MODERATE 88T>C Phe30Leu
M0140718 FGFLILKC_00954 1163818 3 Oral 0.06 protein_coding synonymous_variant LOW 102T>A Thr34Thr
M0140719 FGFLILKC_00954 1163821 4 Oral 0.08 protein_coding synonymous_variant LOW 105T>G Ala35Ala
M0140720 FGFLILKC_00954 1163855 4 Oral 0.08 protein_coding synonymous_variant LOW 139T>C Leu47Leu
M0140721 FGFLILKC_00954 1163890 4 Oral 0.08 protein_coding synonymous_variant LOW 174T>C Phe58Phe
M0140722 FGFLILKC_00954 1163944 3 Oral 0.06 protein_coding synonymous_variant LOW 228C>T Phe76Phe
M0140723 FGFLILKC_00954 1163971 3 Oral 0.06 protein_coding synonymous_variant LOW 255C>T Thr85Thr
M0140724 FGFLILKC_00954 1164171 4 Oral 0.08 protein_coding missense_variant MODERATE 455T>C Leu152Ser
M0140725 FGFLILKC_00954 1164236 4 Oral 0.08 protein_coding missense_variant MODERATE 520A>G Met174Val
M0140726 FGFLILKC_00954 1164283 4 Oral 0.08 protein_coding synonymous_variant LOW 567C>T Ala189Ala
M0140727 FGFLILKC_00954 1164290 3 Oral 0.06 protein_coding missense_variant MODERATE 574G>A Ala192Thr
M0140728 FGFLILKC_00954 1164291 3 Oral 0.06 protein_coding missense_variant MODERATE 575C>T Ala192Val
M0140729 FGFLILKC_00954 1164307 3 Oral 0.06 protein_coding synonymous_variant LOW 591C>T Gly197Gly
M0140730 FGFLILKC_00954 1164566 4 Oral 0.08 protein_coding missense_variant MODERATE 850G>T Val284Leu
M0140731 FGFLILKC_00954 1164628 4 Oral 0.08 protein_coding synonymous_variant LOW 912T>C Ile304Ile
M0140732 FGFLILKC_00954 1164721 4 Oral 0.08 protein_coding synonymous_variant LOW 1005T>A Gly335Gly
M0140733 FGFLILKC_00954 1164797 4 Oral 0.08 protein_coding missense_variant MODERATE 1081A>G Ser361Gly
M0140734 FGFLILKC_00954 1164798 4 Oral 0.08 protein_coding missense_variant MODERATE 1082G>A Ser361Asn
M0140735 FGFLILKC_00954 1164880 3 Oral 0.06 protein_coding synonymous_variant LOW 1164A>G Val388Val
M0140736 FGFLILKC_00954 1164931 3 Oral 0.06 protein_coding synonymous_variant LOW 1215T>A Ile405Ile
M0140737 FGFLILKC_00955 1165085 4 Oral 0.08 protein_coding synonymous_variant LOW 123C>T His41His
M0140738 FGFLILKC_00955 1165376 4 Oral 0.08 protein_coding synonymous_variant LOW 414C>T Pro138Pro
M0140739 FGFLILKC_00955 1165439 3 Oral 0.06 protein_coding synonymous_variant LOW 477C>T Gly159Gly
M0140740 FGFLILKC_00955 1165611 4 Oral 0.08 protein_coding missense_variant MODERATE 649A>G Thr217Ala
M0140741 FGFLILKC_00955 1165748 4 Oral 0.08 protein_coding missense_variant MODERATE 786G>C Lys262Asn
M0140742 FGFLILKC_00955 1165780 4 Oral 0.08 protein_coding missense_variant MODERATE 818A>G Asp273Gly
M0140743 FGFLILKC_00955 1165988 4 Oral 0.08 protein_coding synonymous_variant LOW 1026A>T Ala342Ala
M0140744 FGFLILKC_00955 1166114 4 Oral 0.08 protein_coding synonymous_variant LOW 1152A>G Gln384Gln
M0140745 FGFLILKC_00955 1166123 4 Oral 0.08 protein_coding synonymous_variant LOW 1161T>C Asn387Asn
M0140746 FGFLILKC_00955 1166210 4 Oral 0.08 protein_coding synonymous_variant LOW 1248A>G Ser416Ser
M0140747 FGFLILKC_00955 1166237 3 Oral 0.06 protein_coding synonymous_variant LOW 1275T>C Asp425Asp
M0140748 FGFLILKC_00955 1166279 4 Oral 0.08 protein_coding synonymous_variant LOW 1317C>T Asp439Asp
M0140749 FGFLILKC_00955 1166336 3 Oral 0.06 protein_coding synonymous_variant LOW 1374G>A Ser458Ser
M0140750 FGFLILKC_00955 1166459 4 Oral 0.08 protein_coding synonymous_variant LOW 1497G>A Glu499Glu
M0140751 FGFLILKC_00955 1166558 4 Oral 0.08 protein_coding missense_variant MODERATE 1596A>C Lys532Asn
M0140752 FGFLILKC_00955 1166657 3 Oral 0.06 protein_coding synonymous_variant LOW 1695G>A Glu565Glu
M0140753 FGFLILKC_00955 1166678 3 Oral 0.06 protein_coding synonymous_variant LOW 1716T>G Val572Val
M0140754 FGFLILKC_00956 1166884 4 Oral 0.08 protein_coding synonymous_variant LOW 6C>T Tyr2Tyr
M0140755 FGFLILKC_00956 1166995 3 Oral 0.06 protein_coding synonymous_variant LOW 117A>T Thr39Thr
M0140756 FGFLILKC_00956 1167004 3 Oral 0.06 protein_coding synonymous_variant LOW 126C>T Gly42Gly
M0140757 FGFLILKC_00956 1167079 3 Oral 0.06 protein_coding synonymous_variant LOW 201C>T Pro67Pro
M0140758 FGFLILKC_00956 1167082 3 Oral 0.06 protein_coding synonymous_variant LOW 204A>G Leu68Leu
M0140759 FGFLILKC_00956 1167091 3 Oral 0.06 protein_coding synonymous_variant LOW 213G>T Ser71Ser
M0140760 FGFLILKC_00956 1167114 4 Oral 0.08 protein_coding missense_variant MODERATE 236A>G Asn79Ser
M0140761 FGFLILKC_00956 1167157 4 Oral 0.08 protein_coding synonymous_variant LOW 279T>C Asn93Asn
M0140762 FGFLILKC_00956 1167592 3 Oral 0.06 protein_coding missense_variant MODERATE 714T>A His238Gln
M0140763 FGFLILKC_00956 1167594 4 Oral 0.08 protein_coding missense_variant MODERATE 716G>A Arg239Gln
M0140764 FGFLILKC_00956 1167679 4 Oral 0.08 protein_coding synonymous_variant LOW 801A>G Glu267Glu
M0140765 FGFLILKC_00956 1167685 4 Oral 0.08 protein_coding synonymous_variant LOW 807T>C Arg269Arg
M0140766 FGFLILKC_00956 1167694 4 Oral 0.08 protein_coding synonymous_variant LOW 816G>A Gln272Gln
M0140767 FGFLILKC_00956 1167799 4 Oral 0.08 protein_coding synonymous_variant LOW 921G>A Glu307Glu
M0140768 FGFLILKC_00956 1167823 4 Oral 0.08 protein_coding synonymous_variant LOW 945T>A Ile315Ile
M0140769 FGFLILKC_00956 1167835 4 Oral 0.08 protein_coding synonymous_variant LOW 957T>C Phe319Phe
M0140770 FGFLILKC_00956 1167922 4 Oral 0.08 protein_coding synonymous_variant LOW 1044A>T Ala348Ala
M0140771 FGFLILKC_00956 1168039 4 Oral 0.08 protein_coding synonymous_variant LOW 1161A>G Ser387Ser
M0140772 FGFLILKC_00956 1168264 3 Oral 0.06 protein_coding synonymous_variant LOW 1386C>T Asn462Asn
M0140773 FGFLILKC_00956 1168345 4 Oral 0.08 protein_coding synonymous_variant LOW 1467T>C Ser489Ser
M0140774 FGFLILKC_00956 1168394 4 Oral 0.08 protein_coding missense_variant MODERATE 1516C>G Leu506Val
M0140775 FGFLILKC_00951 1157359 3 Oral 0.06 protein_coding missense_variant MODERATE 19T>C Tyr7His
M0140776 FGFLILKC_00951 1157370 3 Oral 0.06 protein_coding synonymous_variant LOW 30A>G Lys10Lys
M0140777 FGFLILKC_00951 1157405 4 Oral 0.08 protein_coding missense_variant MODERATE 65T>C Val22Ala
M0140778 FGFLILKC_00951 1157435 4 Oral 0.08 protein_coding missense_variant MODERATE 95G>C Gly32Ala
M0140779 FGFLILKC_00951 1157526 4 Oral 0.08 protein_coding synonymous_variant LOW 186A>C Pro62Pro
M0140780 FGFLILKC_00951 1157871 3 Oral 0.06 protein_coding synonymous_variant LOW 531T>A Ser177Ser
M0140781 FGFLILKC_00951 1158288 4 Oral 0.08 protein_coding synonymous_variant LOW 948G>T Gly316Gly
M0140782 FGFLILKC_00951 1158342 3 Oral 0.06 protein_coding synonymous_variant LOW 1002G>T Gly334Gly
M0140783 FGFLILKC_00951 1158354 4 Oral 0.08 protein_coding synonymous_variant LOW 1014T>C Tyr338Tyr
M0140784 FGFLILKC_00951 1158366 4 Oral 0.08 protein_coding synonymous_variant LOW 1026T>C Tyr342Tyr
M0140785 FGFLILKC_00951 1158399 4 Oral 0.08 protein_coding synonymous_variant LOW 1059T>C Gly353Gly
M0140786 FGFLILKC_00951 1158411 4 Oral 0.08 protein_coding synonymous_variant LOW 1071A>G Leu357Leu
M0140787 FGFLILKC_00951 1158567 4 Oral 0.08 protein_coding synonymous_variant LOW 1227C>A Ile409Ile
M0140788 FGFLILKC_00951 1158609 4 Oral 0.08 protein_coding synonymous_variant LOW 1269T>C Leu423Leu
M0140789 FGFLILKC_00951 1158687 4 Oral 0.08 protein_coding synonymous_variant LOW 1347T>C Ala449Ala
M0140790 FGFLILKC_00951 1158735 3 Oral 0.06 protein_coding synonymous_variant LOW 1395C>T Thr465Thr
M0140791 FGFLILKC_00951 1158810 4 Oral 0.08 protein_coding synonymous_variant LOW 1470T>C Thr490Thr
M0140792 FGFLILKC_00951 1158816 3 Oral 0.06 protein_coding synonymous_variant LOW 1476C>T Arg492Arg
M0140793 FGFLILKC_00951 1158885 4 Oral 0.08 protein_coding synonymous_variant LOW 1545A>C Ile515Ile
M0140794 FGFLILKC_00951 1159038 4 Oral 0.08 protein_coding synonymous_variant LOW 1698T>C His566His
M0140795 FGFLILKC_00951 1159335 3 Oral 0.06 protein_coding synonymous_variant LOW 1995G>A Thr665Thr
M0140796 FGFLILKC_00951 1159462 4 Oral 0.08 protein_coding missense_variant MODERATE 2122A>G Thr708Ala
M0140797 FGFLILKC_00951 1159528 3 Oral 0.06 protein_coding synonymous_variant LOW 2188C>T Leu730Leu
M0140798 FGFLILKC_00951 1159860 3 Oral 0.06 protein_coding synonymous_variant LOW 2520T>A Ile840Ile
M0140799 FGFLILKC_00951 1159894 3 Oral 0.06 protein_coding synonymous_variant LOW 2554T>C Leu852Leu
M0140800 FGFLILKC_00951 1159896 3 Oral 0.06 protein_coding missense_variant MODERATE 2556G>C Leu852Phe
M0140801 FGFLILKC_00953 1162142 3 Oral 0.06 protein_coding upstream_gene_variant MODIFIER -5T>A None
M0140802 FGFLILKC_00953 1162143 3 Oral 0.06 protein_coding upstream_gene_variant MODIFIER -4C>T None
M0140803 FGFLILKC_00953 1162755 3 Oral 0.06 protein_coding synonymous_variant LOW 609T>A Thr203Thr
M0140804 FGFLILKC_00954 1164163 3 Oral 0.06 protein_coding synonymous_variant LOW 447T>C Asn149Asn
M0140805 FGFLILKC_00956 1166938 3 Oral 0.06 protein_coding synonymous_variant LOW 60T>A Ala20Ala
M0140806 FGFLILKC_00956 1166942 3 Oral 0.06 protein_coding missense_variant MODERATE 64A>C Asn22His
M0140807 FGFLILKC_00956 1167412 3 Oral 0.06 protein_coding synonymous_variant LOW 534A>G Gln178Gln
M0140808 FGFLILKC_00956 1167622 3 Oral 0.06 protein_coding synonymous_variant LOW 744C>T Gly248Gly
M0140809 FGFLILKC_00956 1168228 3 Oral 0.06 protein_coding synonymous_variant LOW 1350A>G Glu450Glu
M0140810 FGFLILKC_00748 888744 3 Oral 0.06 protein_coding synonymous_variant LOW 339C>T Asp113Asp
M0140811 FGFLILKC_00748 888984 3 Oral 0.06 protein_coding synonymous_variant LOW 99C>T His33His
M0140812 FGFLILKC_01200 1485296 3 Oral 0.06 protein_coding missense_variant MODERATE 364G>T Val122Phe
M0140813 FGFLILKC_01200 1485330 3 Oral 0.06 protein_coding synonymous_variant LOW 330T>A Val110Val
M0140814 FGFLILKC_01200 1485339 3 Oral 0.06 protein_coding synonymous_variant LOW 321A>G Thr107Thr
M0140815 FGFLILKC_01200 1485357 3 Oral 0.06 protein_coding missense_variant MODERATE 303T>G Asn101Lys
M0140816 FGFLILKC_01200 1485560 3 Oral 0.06 protein_coding missense_variant MODERATE 100A>G Thr34Ala
M0140817 FGFLILKC_01200 1485567 3 Oral 0.06 protein_coding synonymous_variant LOW 93G>A Thr31Thr
M0140818 FGFLILKC_01200 1485682 3 Oral 0.06 protein_coding upstream_gene_variant MODIFIER -23A>C None
M0140819 FGFLILKC_01201 1485752 3 Oral 0.06 protein_coding synonymous_variant LOW 2358C>T Ala786Ala
M0140820 FGFLILKC_01201 1485970 3 Oral 0.06 protein_coding missense_variant MODERATE 2140A>G Ile714Val
M0140821 FGFLILKC_01201 1485983 3 Oral 0.06 protein_coding synonymous_variant LOW 2127G>A Arg709Arg
M0140822 FGFLILKC_01201 1486351 3 Oral 0.06 protein_coding missense_variant MODERATE 1759C>G Leu587Val
M0140823 FGFLILKC_01201 1486448 3 Oral 0.06 protein_coding synonymous_variant LOW 1662G>A Val554Val
M0140824 FGFLILKC_01201 1486571 3 Oral 0.06 protein_coding missense_variant MODERATE 1539T>G Asn513Lys
M0140825 FGFLILKC_01201 1486775 3 Oral 0.06 protein_coding synonymous_variant LOW 1335A>G Ser445Ser
M0140826 FGFLILKC_01201 1487174 3 Oral 0.06 protein_coding synonymous_variant LOW 936A>G Val312Val
M0140827 FGFLILKC_01201 1487194 3 Oral 0.06 protein_coding missense_variant MODERATE 916A>G Asn306Asp
M0140828 FGFLILKC_01201 1487295 3 Oral 0.06 protein_coding missense_variant MODERATE 815A>G Lys272Arg
M0140829 FGFLILKC_01201 1487339 3 Oral 0.06 protein_coding synonymous_variant LOW 771G>A Lys257Lys
M0140830 FGFLILKC_01201 1487399 3 Oral 0.06 protein_coding synonymous_variant LOW 711G>A Val237Val
M0153360 DOBODFOC_00113 149003 3 Gut 0.75 protein_coding missense_variant MODERATE 699T>A Asp233Glu
M0153361 DOBODFOC_00113 149042 3 Gut 0.75 protein_coding synonymous_variant LOW 738A>T Val246Val
M0153362 DOBODFOC_00113 149052 3 Gut 0.75 protein_coding missense_variant MODERATE 748G>A Glu250Lys
M0153363 DOBODFOC_00113 149053 3 Gut 0.75 protein_coding missense_variant MODERATE 749A>C Glu250Ala
M0153364 DOBODFOC_00113 149058 3 Gut 0.75 protein_coding synonymous_variant LOW 754C>T Leu252Leu
M0153365 DOBODFOC_00113 149144 3 Gut 0.75 protein_coding synonymous_variant LOW 840A>G Pro280Pro
M0153366 DOBODFOC_00113 149241 3 Gut 0.75 protein_coding missense_variant MODERATE 937C>T Leu313Phe
M0153367 DOBODFOC_00113 149312 3 Gut 0.75 protein_coding synonymous_variant LOW 1008G>A Ala336Ala
M0153368 DOBODFOC_00113 149315 3 Gut 0.75 protein_coding synonymous_variant LOW 1011T>A Ile337Ile
M0153369 DOBODFOC_00113 149318 3 Gut 0.75 protein_coding synonymous_variant LOW 1014G>A Glu338Glu
M0153370 DOBODFOC_00113 149405 3 Gut 0.75 protein_coding synonymous_variant LOW 1101A>G Gly367Gly
M0153371 DOBODFOC_00113 149411 3 Gut 0.75 protein_coding synonymous_variant LOW 1107A>T Arg369Arg
M0153372 DOBODFOC_00113 149445 3 Gut 0.75 protein_coding missense_variant MODERATE 1141T>A Leu381Ile
M0153373 DOBODFOC_00113 149450 3 Gut 0.75 protein_coding synonymous_variant LOW 1146A>G Glu382Glu
M0153374 DOBODFOC_00113 149498 3 Gut 0.75 protein_coding synonymous_variant LOW 1194T>C Gly398Gly
M0153375 DOBODFOC_00113 149520 3 Gut 0.75 protein_coding missense_variant MODERATE 1216G>A Val406Ile
M0153376 DOBODFOC_00113 149643 3 Gut 0.75 protein_coding missense_variant MODERATE 1339A>T Thr447Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
FGFLILKC_00498 PHI:3085 GroEL 75.4 1.6e-227 1 542 1.0000 1.0000 rodents periodontitis folding of newly synthesized proteins, preventing misfolding and aggregation increased virulence (hypervirulence)
FGFLILKC_01188 PHI:10047 fumB 72.8 1.2e-238 6 548 0.9909 0.9927 rodents salmonellosis fumarate hydratase class I reduced virulence
HKOFJJCI_00498 PHI:3085 GroEL 75.4 1.6e-227 1 542 1.0000 1.0000 rodents periodontitis folding of newly synthesized proteins, preventing misfolding and aggregation increased virulence (hypervirulence)
HKOFJJCI_01188 PHI:10047 fumB 72.8 1.2e-238 6 548 0.9909 0.9927 rodents salmonellosis fumarate hydratase class I reduced virulence
DOBODFOC_00498 PHI:3085 GroEL 75.4 1.6e-227 1 542 1.0000 1.0000 rodents periodontitis folding of newly synthesized proteins, preventing misfolding and aggregation increased virulence (hypervirulence)
DOBODFOC_01188 PHI:10047 fumB 72.8 1.2e-238 6 548 0.9909 0.9927 rodents salmonellosis fumarate hydratase class I reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FGFLILKC_00004 EFC70776.1|CBM50|GH23 100 0 1 445 1 1
FGFLILKC_00051 EFC70822.1|GH33 100 7.87e-306 1 407 1 1
FGFLILKC_00094 EFC70863.1|GT2 100 1.93e-198 1 274 1 1
FGFLILKC_00152 EFC71329.2|GH24 100 1.87e-123 1 168 1 1
FGFLILKC_00187 EFC71363.2|GH92 100 0 1 760 1 1
FGFLILKC_00188 EFC71364.1|GH125 100 0 1 493 1 1
FGFLILKC_00202 EFC71377.1|GH85 100 0 1 1258 1 1
FGFLILKC_00238 EFC71412.1|GH25 100 4.1e-215 1 277 1 1
FGFLILKC_00267 EFC71440.1|GT25 100 3.07e-179 1 242 1 1
FGFLILKC_00300 EFC71474.2|GT2 100 1.07e-188 1 251 1 1
FGFLILKC_00329 EFC71502.1|GT4 100 2.59e-275 1 372 1 1
FGFLILKC_00330 EFC71503.1|GT2 100 5.57e-210 1 289 1 1
FGFLILKC_00331 EFC71504.1|GT11 100 6.09e-220 1 292 1 1
FGFLILKC_00332 EFC71505.1|GT6 100 1.04e-202 1 265 1 1
FGFLILKC_00334 EFC71507.2|GT2 100 5.77e-200 1 265 1 1
FGFLILKC_00394 EFC71566.1|GT2 100 2.64e-285 1 392 1 1
FGFLILKC_00415 EFC71586.1|GT2 100 6.07e-249 1 336 1 1
FGFLILKC_00416 EFC71587.1|GT111 100 5.57e-207 1 274 1 1
FGFLILKC_00417 EFC71588.1|GT2 100 1.03e-238 1 323 1 1
FGFLILKC_00418 EFC71589.1|GT2 100 3.48e-242 1 324 1 1
FGFLILKC_00420 EFC71591.1|GT4 100 2.52e-259 1 358 1 1
FGFLILKC_00421 EFC71592.1|GT2 100 2.23e-231 1 319 1 1
FGFLILKC_00424 EFC71595.1|GT4 100 5.99e-265 1 354 1 1
FGFLILKC_00487 EFC71656.2|GH29 100 0 1 749 1 1
FGFLILKC_00500 EFC71668.1|GT2 100 1.73e-214 1 300 1 1
FGFLILKC_00503 EFC71671.1|GH13 100 0 1 587 1 1
FGFLILKC_00508 AGT63952.1|GT35 100 0 1 853 1 1
FGFLILKC_00509 AGT63953.1|GT3 100 0 1 549 1 1
FGFLILKC_00538 EFC71701.2|GH25 100 4.04e-175 1 233 1 1
FGFLILKC_00569 EFC71732.1|GT2 100 8.96e-291 1 397 1 1
FGFLILKC_00590 EFC71750.1|GT8 100 2.84e-238 1 309 1 1
FGFLILKC_00645 EFC71803.1|GH2 100 0 1 1344 1 1
FGFLILKC_00661 EFC71818.1|GT51 100 0 1 836 1 1
FGFLILKC_00664 EFC71821.1|CE11 100 0 1 463 1 1
FGFLILKC_00686 AGT63958.1|GT2 100 0 1 1262 1 1
FGFLILKC_00718 EFC71874.1|GH57 100 0 1 458 1 1
FGFLILKC_00719 EFC71875.1|GT4 100 0 1 419 1 1
FGFLILKC_00720 EFC71876.1|GH133 100 0 1 647 1 1
FGFLILKC_00752 EFC71905.1|GH20 100 0 1 542 1 1
FGFLILKC_00765 EFC71917.2|GH13_8 100 0 1 693 1 1
FGFLILKC_00924 EFC71208.1|CE20 100 0 1 693 1 1
FGFLILKC_00928 EFC71205.1|GT4 100 1.64e-280 1 385 1 1
FGFLILKC_00942 EFC71189.1|GH18 100 4.78e-272 1 356 1 1
FGFLILKC_00949 EFC71183.2|GH85 100 0 1 1449 1 1
FGFLILKC_00950 EFC71182.2|GH85 100 0 1 1412 1 1
FGFLILKC_00956 EFC71175.2|GH31 100 0 1 528 1 1
FGFLILKC_00962 EFC71170.1|GH85 100 0 1 1250 1 1
FGFLILKC_00963 EFC71169.1|GH85 100 0 1 1257 1 1
FGFLILKC_00967 EFC71166.1|GH85 100 0 1 1006 1 1
FGFLILKC_00968 EFC71165.1|GH85 100 0 1 1008 1 1
FGFLILKC_00969 EFC71164.1|GH85 100 0 1 1247 1 1
FGFLILKC_00973 EFC71159.1|GT9 100 3.73e-261 1 358 1 1
FGFLILKC_00975 EFC71157.1|GT2 100 2.83e-232 1 324 1 1
FGFLILKC_00978 EFC71154.1|GT4 100 1.28e-273 1 368 1 1
FGFLILKC_01001 EFC71130.1|GH20 100 0 1 550 1 1
FGFLILKC_01002 EFC71129.1|GH2 100 0 1 795 1 1
FGFLILKC_01026 EFC71106.1|GH36 100 0 1 709 1 1
FGFLILKC_01029 EFC71103.1|GH36 100 0 1 772 1 1
FGFLILKC_01069 EFC71066.1|GH97 100 0 1 710 1 1
FGFLILKC_01074 EFC71061.2|GH109 100 0 1 515 1 1
FGFLILKC_01111 EFC71027.1|CBM50 100 6.39e-229 1 315 1 1
FGFLILKC_01112 EFC71026.1|GT2 100 3.72e-188 1 258 1 1
FGFLILKC_01113 EFC71025.1|GT4 100 7.8800002170845e-317 1 424 1 1
FGFLILKC_01114 EFC71024.1|GH92 100 0 1 715 1 1
FGFLILKC_01138 EFC70999.1|GH18 100 0 1 455 1 1
FGFLILKC_01165 EFC70974.1|GH130 100 3.81e-255 1 324 1 1
FGFLILKC_01187 EFC70953.1|GH92 100 0 1 752 1 1
FGFLILKC_01191 EFC70949.1|GH20 100 0 1 547 1 1
FGFLILKC_01246 EFC70588.2|CBM20|GH77 100 0 1 901 1 1
FGFLILKC_01250 EFC70592.2|GT28 100 7.55e-262 1 369 1 1
FGFLILKC_01262 EFC70604.2|GT4 100 5.14e-269 1 351 1 1
FGFLILKC_01272 EFC70613.1|GH20 100 0 1 531 1 1
FGFLILKC_01282 EFC70623.1|GH63 100 0 1 543 1 1
FGFLILKC_01378 EFC70712.1|GT2 100 3.19e-234 1 316 1 1
FGFLILKC_01405 EFC70737.2|GH20 100 0 1 722 1 1
FGFLILKC_01406 EFC70738.1|GH13_28 100 0 1 473 1 1
FGFLILKC_01444 EFC70771.1|GT19 100 3.2e-263 1 387 1 1
HKOFJJCI_00004 EFC70776.1|CBM50|GH23 100 0 1 445 1 1
HKOFJJCI_00051 EFC70822.1|GH33 100 7.87e-306 1 407 1 1
HKOFJJCI_00094 EFC70863.1|GT2 100 1.93e-198 1 274 1 1
HKOFJJCI_00152 EFC71329.2|GH24 100 1.87e-123 1 168 1 1
HKOFJJCI_00187 EFC71363.2|GH92 100 0 1 760 1 1
HKOFJJCI_00188 EFC71364.1|GH125 100 0 1 493 1 1
HKOFJJCI_00202 EFC71377.1|GH85 100 0 1 1258 1 1
HKOFJJCI_00238 EFC71412.1|GH25 100 4.1e-215 1 277 1 1
HKOFJJCI_00267 EFC71440.1|GT25 100 3.07e-179 1 242 1 1
HKOFJJCI_00300 EFC71474.2|GT2 100 1.07e-188 1 251 1 1
HKOFJJCI_00329 EFC71502.1|GT4 100 2.59e-275 1 372 1 1
HKOFJJCI_00330 EFC71503.1|GT2 100 5.57e-210 1 289 1 1
HKOFJJCI_00331 EFC71504.1|GT11 100 6.09e-220 1 292 1 1
HKOFJJCI_00332 EFC71505.1|GT6 100 1.04e-202 1 265 1 1
HKOFJJCI_00334 EFC71507.2|GT2 100 5.77e-200 1 265 1 1
HKOFJJCI_00394 EFC71566.1|GT2 100 2.64e-285 1 392 1 1
HKOFJJCI_00415 EFC71586.1|GT2 100 6.07e-249 1 336 1 1
HKOFJJCI_00416 EFC71587.1|GT111 100 5.57e-207 1 274 1 1
HKOFJJCI_00417 EFC71588.1|GT2 100 1.03e-238 1 323 1 1
HKOFJJCI_00418 EFC71589.1|GT2 100 3.48e-242 1 324 1 1
HKOFJJCI_00420 EFC71591.1|GT4 100 2.52e-259 1 358 1 1
HKOFJJCI_00421 EFC71592.1|GT2 100 2.23e-231 1 319 1 1
HKOFJJCI_00424 EFC71595.1|GT4 100 5.99e-265 1 354 1 1
HKOFJJCI_00487 EFC71656.2|GH29 100 0 1 749 1 1
HKOFJJCI_00500 EFC71668.1|GT2 100 1.73e-214 1 300 1 1
HKOFJJCI_00503 EFC71671.1|GH13 100 0 1 587 1 1
HKOFJJCI_00508 AGT63952.1|GT35 100 0 1 853 1 1
HKOFJJCI_00509 AGT63953.1|GT3 100 0 1 549 1 1
HKOFJJCI_00538 EFC71701.2|GH25 100 4.04e-175 1 233 1 1
HKOFJJCI_00569 EFC71732.1|GT2 100 8.96e-291 1 397 1 1
HKOFJJCI_00590 EFC71750.1|GT8 100 2.84e-238 1 309 1 1
HKOFJJCI_00645 EFC71803.1|GH2 100 0 1 1344 1 1
HKOFJJCI_00661 EFC71818.1|GT51 100 0 1 836 1 1
HKOFJJCI_00664 EFC71821.1|CE11 100 0 1 463 1 1
HKOFJJCI_00686 AGT63958.1|GT2 100 0 1 1262 1 1
HKOFJJCI_00718 EFC71874.1|GH57 100 0 1 458 1 1
HKOFJJCI_00719 EFC71875.1|GT4 100 0 1 419 1 1
HKOFJJCI_00720 EFC71876.1|GH133 100 0 1 647 1 1
HKOFJJCI_00752 EFC71905.1|GH20 100 0 1 542 1 1
HKOFJJCI_00765 EFC71917.2|GH13_8 100 0 1 693 1 1
HKOFJJCI_00924 EFC71208.1|CE20 100 0 1 693 1 1
HKOFJJCI_00928 EFC71205.1|GT4 100 1.64e-280 1 385 1 1
HKOFJJCI_00942 EFC71189.1|GH18 100 4.78e-272 1 356 1 1
HKOFJJCI_00949 EFC71183.2|GH85 100 0 1 1449 1 1
HKOFJJCI_00950 EFC71182.2|GH85 100 0 1 1412 1 1
HKOFJJCI_00956 EFC71175.2|GH31 100 0 1 528 1 1
HKOFJJCI_00962 EFC71170.1|GH85 100 0 1 1250 1 1
HKOFJJCI_00963 EFC71169.1|GH85 100 0 1 1257 1 1
HKOFJJCI_00967 EFC71166.1|GH85 100 0 1 1006 1 1
HKOFJJCI_00968 EFC71165.1|GH85 100 0 1 1008 1 1
HKOFJJCI_00969 EFC71164.1|GH85 100 0 1 1247 1 1
HKOFJJCI_00973 EFC71159.1|GT9 100 3.73e-261 1 358 1 1
HKOFJJCI_00975 EFC71157.1|GT2 100 2.83e-232 1 324 1 1
HKOFJJCI_00978 EFC71154.1|GT4 100 1.28e-273 1 368 1 1
HKOFJJCI_01001 EFC71130.1|GH20 100 0 1 550 1 1
HKOFJJCI_01002 EFC71129.1|GH2 100 0 1 795 1 1
HKOFJJCI_01026 EFC71106.1|GH36 100 0 1 709 1 1
HKOFJJCI_01029 EFC71103.1|GH36 100 0 1 772 1 1
HKOFJJCI_01069 EFC71066.1|GH97 100 0 1 710 1 1
HKOFJJCI_01074 EFC71061.2|GH109 100 0 1 515 1 1
HKOFJJCI_01111 EFC71027.1|CBM50 100 6.39e-229 1 315 1 1
HKOFJJCI_01112 EFC71026.1|GT2 100 3.72e-188 1 258 1 1
HKOFJJCI_01113 EFC71025.1|GT4 100 7.8800002170845e-317 1 424 1 1
HKOFJJCI_01114 EFC71024.1|GH92 100 0 1 715 1 1
HKOFJJCI_01138 EFC70999.1|GH18 100 0 1 455 1 1
HKOFJJCI_01165 EFC70974.1|GH130 100 3.81e-255 1 324 1 1
HKOFJJCI_01187 EFC70953.1|GH92 100 0 1 752 1 1
HKOFJJCI_01191 EFC70949.1|GH20 100 0 1 547 1 1
HKOFJJCI_01246 EFC70588.2|CBM20|GH77 100 0 1 901 1 1
HKOFJJCI_01250 EFC70592.2|GT28 100 7.55e-262 1 369 1 1
HKOFJJCI_01262 EFC70604.2|GT4 100 5.14e-269 1 351 1 1
HKOFJJCI_01272 EFC70613.1|GH20 100 0 1 531 1 1
HKOFJJCI_01282 EFC70623.1|GH63 100 0 1 543 1 1
HKOFJJCI_01378 EFC70712.1|GT2 100 3.19e-234 1 316 1 1
HKOFJJCI_01405 EFC70737.2|GH20 100 0 1 722 1 1
HKOFJJCI_01406 EFC70738.1|GH13_28 100 0 1 473 1 1
HKOFJJCI_01444 EFC70771.1|GT19 100 3.2e-263 1 387 1 1
DOBODFOC_00004 EFC70776.1|CBM50|GH23 100 0 1 445 1 1
DOBODFOC_00051 EFC70822.1|GH33 100 7.87e-306 1 407 1 1
DOBODFOC_00094 EFC70863.1|GT2 100 1.93e-198 1 274 1 1
DOBODFOC_00152 EFC71329.2|GH24 100 1.87e-123 1 168 1 1
DOBODFOC_00187 EFC71363.2|GH92 100 0 1 760 1 1
DOBODFOC_00188 EFC71364.1|GH125 100 0 1 493 1 1
DOBODFOC_00202 EFC71377.1|GH85 100 0 1 1258 1 1
DOBODFOC_00238 EFC71412.1|GH25 100 4.1e-215 1 277 1 1
DOBODFOC_00267 EFC71440.1|GT25 100 3.07e-179 1 242 1 1
DOBODFOC_00300 EFC71474.2|GT2 100 1.07e-188 1 251 1 1
DOBODFOC_00329 EFC71502.1|GT4 100 2.59e-275 1 372 1 1
DOBODFOC_00330 EFC71503.1|GT2 100 5.57e-210 1 289 1 1
DOBODFOC_00331 EFC71504.1|GT11 100 6.09e-220 1 292 1 1
DOBODFOC_00332 EFC71505.1|GT6 100 1.04e-202 1 265 1 1
DOBODFOC_00334 EFC71507.2|GT2 100 5.77e-200 1 265 1 1
DOBODFOC_00394 EFC71566.1|GT2 100 2.64e-285 1 392 1 1
DOBODFOC_00415 EFC71586.1|GT2 100 6.07e-249 1 336 1 1
DOBODFOC_00416 EFC71587.1|GT111 100 5.57e-207 1 274 1 1
DOBODFOC_00417 EFC71588.1|GT2 100 1.03e-238 1 323 1 1
DOBODFOC_00418 EFC71589.1|GT2 100 3.48e-242 1 324 1 1
DOBODFOC_00420 EFC71591.1|GT4 100 2.52e-259 1 358 1 1
DOBODFOC_00421 EFC71592.1|GT2 100 2.23e-231 1 319 1 1
DOBODFOC_00424 EFC71595.1|GT4 100 5.99e-265 1 354 1 1
DOBODFOC_00487 EFC71656.2|GH29 100 0 1 749 1 1
DOBODFOC_00500 EFC71668.1|GT2 100 1.73e-214 1 300 1 1
DOBODFOC_00503 EFC71671.1|GH13 100 0 1 587 1 1
DOBODFOC_00508 AGT63952.1|GT35 100 0 1 853 1 1
DOBODFOC_00509 AGT63953.1|GT3 100 0 1 549 1 1
DOBODFOC_00538 EFC71701.2|GH25 100 4.04e-175 1 233 1 1
DOBODFOC_00569 EFC71732.1|GT2 100 8.96e-291 1 397 1 1
DOBODFOC_00590 EFC71750.1|GT8 100 2.84e-238 1 309 1 1
DOBODFOC_00645 EFC71803.1|GH2 100 0 1 1344 1 1
DOBODFOC_00661 EFC71818.1|GT51 100 0 1 836 1 1
DOBODFOC_00664 EFC71821.1|CE11 100 0 1 463 1 1
DOBODFOC_00686 AGT63958.1|GT2 100 0 1 1262 1 1
DOBODFOC_00718 EFC71874.1|GH57 100 0 1 458 1 1
DOBODFOC_00719 EFC71875.1|GT4 100 0 1 419 1 1
DOBODFOC_00720 EFC71876.1|GH133 100 0 1 647 1 1
DOBODFOC_00752 EFC71905.1|GH20 100 0 1 542 1 1
DOBODFOC_00765 EFC71917.2|GH13_8 100 0 1 693 1 1
DOBODFOC_00924 EFC71208.1|CE20 100 0 1 693 1 1
DOBODFOC_00928 EFC71205.1|GT4 100 1.64e-280 1 385 1 1
DOBODFOC_00942 EFC71189.1|GH18 100 4.78e-272 1 356 1 1
DOBODFOC_00949 EFC71183.2|GH85 100 0 1 1449 1 1
DOBODFOC_00950 EFC71182.2|GH85 100 0 1 1412 1 1
DOBODFOC_00956 EFC71175.2|GH31 100 0 1 528 1 1
DOBODFOC_00962 EFC71170.1|GH85 100 0 1 1250 1 1
DOBODFOC_00963 EFC71169.1|GH85 100 0 1 1257 1 1
DOBODFOC_00967 EFC71166.1|GH85 100 0 1 1006 1 1
DOBODFOC_00968 EFC71165.1|GH85 100 0 1 1008 1 1
DOBODFOC_00969 EFC71164.1|GH85 100 0 1 1247 1 1
DOBODFOC_00973 EFC71159.1|GT9 100 3.73e-261 1 358 1 1
DOBODFOC_00975 EFC71157.1|GT2 100 2.83e-232 1 324 1 1
DOBODFOC_00978 EFC71154.1|GT4 100 1.28e-273 1 368 1 1
DOBODFOC_01001 EFC71130.1|GH20 100 0 1 550 1 1
DOBODFOC_01002 EFC71129.1|GH2 100 0 1 795 1 1
DOBODFOC_01026 EFC71106.1|GH36 100 0 1 709 1 1
DOBODFOC_01029 EFC71103.1|GH36 100 0 1 772 1 1
DOBODFOC_01069 EFC71066.1|GH97 100 0 1 710 1 1
DOBODFOC_01074 EFC71061.2|GH109 100 0 1 515 1 1
DOBODFOC_01111 EFC71027.1|CBM50 100 6.39e-229 1 315 1 1
DOBODFOC_01112 EFC71026.1|GT2 100 3.72e-188 1 258 1 1
DOBODFOC_01113 EFC71025.1|GT4 100 7.8800002170845e-317 1 424 1 1
DOBODFOC_01114 EFC71024.1|GH92 100 0 1 715 1 1
DOBODFOC_01138 EFC70999.1|GH18 100 0 1 455 1 1
DOBODFOC_01165 EFC70974.1|GH130 100 3.81e-255 1 324 1 1
DOBODFOC_01187 EFC70953.1|GH92 100 0 1 752 1 1
DOBODFOC_01191 EFC70949.1|GH20 100 0 1 547 1 1
DOBODFOC_01246 EFC70588.2|CBM20|GH77 100 0 1 901 1 1
DOBODFOC_01250 EFC70592.2|GT28 100 7.55e-262 1 369 1 1
DOBODFOC_01262 EFC70604.2|GT4 100 5.14e-269 1 351 1 1
DOBODFOC_01272 EFC70613.1|GH20 100 0 1 531 1 1
DOBODFOC_01282 EFC70623.1|GH63 100 0 1 543 1 1
DOBODFOC_01378 EFC70712.1|GT2 100 3.19e-234 1 316 1 1
DOBODFOC_01405 EFC70737.2|GH20 100 0 1 722 1 1
DOBODFOC_01406 EFC70738.1|GH13_28 100 0 1 473 1 1
DOBODFOC_01444 EFC70771.1|GT19 100 3.2e-263 1 387 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FGFLILKC_00545 9.B.144.1.4 71.3 0 1 827 0.9928 0.9976 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.144 The DUF3367 (DUF3367) Family
HKOFJJCI_00545 9.B.144.1.4 71.3 0 1 827 0.9928 0.9976 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.144 The DUF3367 (DUF3367) Family
DOBODFOC_00545 9.B.144.1.4 71.3 0 1 827 0.9928 0.9976 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.144 The DUF3367 (DUF3367) Family