Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C352
  Reference Plasmid   NZ_AP015031.1
  Reference Plasmid Size   276165
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0086546 FDNOHDLK_00297 242606 5 Skin 0.22 protein_coding synonymous_variant LOW 234T>C Thr78Thr
M0086547 FDNOHDLK_00149 116674 9 Skin 0.39 protein_coding missense_variant MODERATE 43A>G Ser15Gly
M0086548 FDNOHDLK_00149 116728 9 Skin 0.39 protein_coding missense_variant MODERATE 97A>T Asn33Tyr
M0086549 FDNOHDLK_00149 116735 9 Skin 0.39 protein_coding missense_variant MODERATE 104C>A Pro35Gln
M0086550 FDNOHDLK_00149 116737 9 Skin 0.39 protein_coding missense_variant MODERATE 106A>G Thr36Ala
M0086551 FDNOHDLK_00149 116744 9 Skin 0.39 protein_coding missense_variant MODERATE 113T>C Leu38Pro
M0086552 FDNOHDLK_00149 116946 9 Skin 0.39 protein_coding synonymous_variant LOW 315T>C Leu105Leu
M0086553 FDNOHDLK_00149 116952 9 Skin 0.39 protein_coding synonymous_variant LOW 321G>A Glu107Glu
M0086554 FDNOHDLK_00149 116961 9 Skin 0.39 protein_coding synonymous_variant LOW 330G>A Leu110Leu
M0086555 FDNOHDLK_00149 116970 9 Skin 0.39 protein_coding synonymous_variant LOW 339A>T Ile113Ile
M0086556 FDNOHDLK_00149 116976 9 Skin 0.39 protein_coding synonymous_variant LOW 345C>T Arg115Arg
M0086557 FDNOHDLK_00149 117141 9 Skin 0.39 protein_coding synonymous_variant LOW 510C>T Arg170Arg
M0086558 FDNOHDLK_00149 117201 9 Skin 0.39 protein_coding synonymous_variant LOW 570C>T Arg190Arg
M0086559 FDNOHDLK_00149 117416 9 Skin 0.39 protein_coding missense_variant MODERATE 785G>T Arg262Met
M0086560 FDNOHDLK_00149 117555 9 Skin 0.39 protein_coding synonymous_variant LOW 924A>G Pro308Pro
M0086561 FDNOHDLK_00149 117660 9 Skin 0.39 protein_coding synonymous_variant LOW 1029C>A Val343Val
M0086562 FDNOHDLK_00149 117682 9 Skin 0.39 protein_coding missense_variant MODERATE 1051C>T His351Tyr
M0086563 FDNOHDLK_00149 117749 9 Skin 0.39 protein_coding missense_variant MODERATE 1118C>G Ser373Cys
M0086564 FDNOHDLK_00149 117771 9 Skin 0.39 protein_coding synonymous_variant LOW 1140G>C Ser380Ser
M0086565 FDNOHDLK_00149 117786 9 Skin 0.39 protein_coding synonymous_variant LOW 1155G>A Arg385Arg
M0086566 FDNOHDLK_00149 117844 9 Skin 0.39 protein_coding missense_variant MODERATE 1213A>G Thr405Ala
M0086567 FDNOHDLK_00146 117886 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -2809A>C None
M0086568 FDNOHDLK_00146 117965 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -2888C>T None
M0086569 FDNOHDLK_00146 118007 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -2930A>G None
M0086570 FDNOHDLK_00150 118062 9 Skin 0.39 protein_coding synonymous_variant LOW 9T>C Ile3Ile
M0086571 FDNOHDLK_00150 118146 9 Skin 0.39 protein_coding synonymous_variant LOW 93T>C Gly31Gly
M0086572 FDNOHDLK_00150 118245 9 Skin 0.39 protein_coding synonymous_variant LOW 192A>G Leu64Leu
M0086573 FDNOHDLK_00150 118294 9 Skin 0.39 protein_coding missense_variant MODERATE 241A>G Ile81Val
M0086574 FDNOHDLK_00150 118311 9 Skin 0.39 protein_coding synonymous_variant LOW 258T>A Ile86Ile
M0086575 FDNOHDLK_00150 118356 9 Skin 0.39 protein_coding synonymous_variant LOW 303C>A Ile101Ile
M0086576 FDNOHDLK_00150 118407 9 Skin 0.39 protein_coding synonymous_variant LOW 354C>T Ile118Ile
M0086577 FDNOHDLK_00150 118492 8 Skin 0.35 protein_coding missense_variant MODERATE 439A>G Thr147Ala
M0086578 FDNOHDLK_00150 118501 8 Skin 0.35 protein_coding missense_variant MODERATE 448A>G Ile150Val
M0086579 FDNOHDLK_00150 118551 8 Skin 0.35 protein_coding synonymous_variant LOW 498A>G Pro166Pro
M0086580 FDNOHDLK_00150 118554 8 Skin 0.35 protein_coding synonymous_variant LOW 501T>C Ala167Ala
M0086581 FDNOHDLK_00146 118582 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3505C>T None
M0086582 FDNOHDLK_00146 118665 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3588G>T None
M0086583 FDNOHDLK_00146 118667 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3590T>A None
M0086584 FDNOHDLK_00151 118741 8 Skin 0.35 protein_coding missense_variant MODERATE 266G>A Gly89Glu
M0086585 FDNOHDLK_00151 118761 8 Skin 0.35 protein_coding synonymous_variant LOW 246A>G Glu82Glu
M0086586 FDNOHDLK_00151 118896 8 Skin 0.35 protein_coding synonymous_variant LOW 111T>C Ile37Ile
M0086587 FDNOHDLK_00151 118949 8 Skin 0.35 protein_coding missense_variant MODERATE 58A>G Asn20Asp
M0086588 FDNOHDLK_00151 118962 8 Skin 0.35 protein_coding synonymous_variant LOW 45T>C Ser15Ser
M0086589 FDNOHDLK_00151 118968 8 Skin 0.35 protein_coding synonymous_variant LOW 39G>A Gly13Gly
M0086590 FDNOHDLK_00146 119025 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3948A>C None
M0086591 FDNOHDLK_00146 119071 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3994G>A None
M0086592 FDNOHDLK_00146 119088 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -4011A>G None
M0086593 FDNOHDLK_00152 119475 8 Skin 0.35 protein_coding synonymous_variant LOW 324A>G Leu108Leu
M0086594 FDNOHDLK_00152 119484 8 Skin 0.35 protein_coding synonymous_variant LOW 315T>C Phe105Phe
M0086595 FDNOHDLK_00152 119502 8 Skin 0.35 protein_coding synonymous_variant LOW 297A>G Leu99Leu
M0086596 FDNOHDLK_00152 119517 8 Skin 0.35 protein_coding synonymous_variant LOW 282C>A Gly94Gly
M0086597 FDNOHDLK_00152 119577 7 Skin 0.30 protein_coding synonymous_variant LOW 222C>T Arg74Arg
M0086598 FDNOHDLK_00152 119589 7 Skin 0.30 protein_coding synonymous_variant LOW 210T>C Asn70Asn
M0086599 FDNOHDLK_00152 119598 7 Skin 0.30 protein_coding synonymous_variant LOW 201C>T Arg67Arg
M0086600 FDNOHDLK_00152 119625 7 Skin 0.30 protein_coding synonymous_variant LOW 174T>C Asp58Asp
M0086601 FDNOHDLK_00152 119637 7 Skin 0.30 protein_coding synonymous_variant LOW 162T>G Leu54Leu
M0086602 FDNOHDLK_00152 119640 7 Skin 0.30 protein_coding synonymous_variant LOW 159C>T Asn53Asn
M0086603 FDNOHDLK_00152 119649 7 Skin 0.30 protein_coding synonymous_variant LOW 150C>G Leu50Leu
M0086604 FDNOHDLK_00152 119652 7 Skin 0.30 protein_coding synonymous_variant LOW 147T>C Ile49Ile
M0086605 FDNOHDLK_00152 119664 7 Skin 0.30 protein_coding synonymous_variant LOW 135C>T Tyr45Tyr
M0086606 FDNOHDLK_00152 119676 7 Skin 0.30 protein_coding synonymous_variant LOW 123A>G Lys41Lys
M0086607 FDNOHDLK_00152 119679 7 Skin 0.30 protein_coding synonymous_variant LOW 120C>T Ala40Ala
M0086608 FDNOHDLK_00152 119688 7 Skin 0.30 protein_coding synonymous_variant LOW 111G>A Leu37Leu
M0086609 FDNOHDLK_00152 119697 7 Skin 0.30 protein_coding synonymous_variant LOW 102T>A Ser34Ser
M0086610 FDNOHDLK_00152 119700 7 Skin 0.30 protein_coding synonymous_variant LOW 99C>G Gly33Gly
M0086611 FDNOHDLK_00152 119709 7 Skin 0.30 protein_coding synonymous_variant LOW 90T>C Val30Val
M0086612 FDNOHDLK_00152 119718 7 Skin 0.30 protein_coding synonymous_variant LOW 81T>A Val27Val
M0086613 FDNOHDLK_00146 119980 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4903C>A None
M0086614 FDNOHDLK_00146 120031 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4954G>A None
M0086615 FDNOHDLK_00146 120067 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4990A>G None
M0086616 FDNOHDLK_00151 120079 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1073C>T None
M0086617 FDNOHDLK_00151 120082 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1076T>C None
M0086618 FDNOHDLK_00151 120100 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1094G>A None
M0086619 FDNOHDLK_00151 120128 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1122C>T None
M0086620 FDNOHDLK_00151 120151 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1145G>A None
M0086621 FDNOHDLK_00151 120230 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1224A>C None
M0086622 FDNOHDLK_00151 120251 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1245A>G None
M0086623 FDNOHDLK_00151 120258 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1252T>G None
M0086624 FDNOHDLK_00151 120261 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1255A>G None
M0086625 FDNOHDLK_00151 120264 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1258C>A None
M0086626 FDNOHDLK_00151 120266 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1260T>C None
M0086627 FDNOHDLK_00151 120275 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1269A>G None
M0086628 FDNOHDLK_00153 120348 6 Skin 0.26 protein_coding synonymous_variant LOW 1284A>T Ala428Ala
M0086629 FDNOHDLK_00153 120354 6 Skin 0.26 protein_coding synonymous_variant LOW 1278T>C Ala426Ala
M0086630 FDNOHDLK_00153 120389 6 Skin 0.26 protein_coding synonymous_variant LOW 1243T>C Leu415Leu
M0086631 FDNOHDLK_00153 120390 6 Skin 0.26 protein_coding synonymous_variant LOW 1242C>T Asp414Asp
M0086632 FDNOHDLK_00153 120519 5 Skin 0.22 protein_coding synonymous_variant LOW 1113C>T Gly371Gly
M0086633 FDNOHDLK_00153 120540 5 Skin 0.22 protein_coding synonymous_variant LOW 1092C>G Thr364Thr
M0086634 FDNOHDLK_00153 120678 6 Skin 0.26 protein_coding synonymous_variant LOW 954T>C Tyr318Tyr
M0086635 FDNOHDLK_00153 120711 6 Skin 0.26 protein_coding synonymous_variant LOW 921C>T His307His
M0086636 FDNOHDLK_00153 120732 6 Skin 0.26 protein_coding synonymous_variant LOW 900T>C Ala300Ala
M0086637 FDNOHDLK_00153 120747 6 Skin 0.26 protein_coding synonymous_variant LOW 885C>T Gly295Gly
M0086638 FDNOHDLK_00153 120840 6 Skin 0.26 protein_coding synonymous_variant LOW 792T>G Ala264Ala
M0086639 FDNOHDLK_00153 120867 6 Skin 0.26 protein_coding synonymous_variant LOW 765T>G Val255Val
M0086640 FDNOHDLK_00153 120873 5 Skin 0.22 protein_coding synonymous_variant LOW 759C>A Thr253Thr
M0086641 FDNOHDLK_00153 120876 6 Skin 0.26 protein_coding synonymous_variant LOW 756T>C Gly252Gly
M0086642 FDNOHDLK_00153 120960 6 Skin 0.26 protein_coding synonymous_variant LOW 672T>C Gly224Gly
M0086643 FDNOHDLK_00153 121005 6 Skin 0.26 protein_coding synonymous_variant LOW 627C>G Thr209Thr
M0086644 FDNOHDLK_00153 121110 5 Skin 0.22 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0086645 FDNOHDLK_00153 121119 5 Skin 0.22 protein_coding synonymous_variant LOW 513C>T Ser171Ser
M0086646 FDNOHDLK_00153 121122 5 Skin 0.22 protein_coding synonymous_variant LOW 510A>G Glu170Glu
M0086647 FDNOHDLK_00153 121146 5 Skin 0.22 protein_coding synonymous_variant LOW 486C>G Ser162Ser
M0086648 FDNOHDLK_00153 121152 5 Skin 0.22 protein_coding synonymous_variant LOW 480T>C Val160Val
M0086649 FDNOHDLK_00153 121161 5 Skin 0.22 protein_coding synonymous_variant LOW 471T>C Thr157Thr
M0086650 FDNOHDLK_00153 121173 5 Skin 0.22 protein_coding synonymous_variant LOW 459T>C Val153Val
M0086651 FDNOHDLK_00153 121254 5 Skin 0.22 protein_coding synonymous_variant LOW 378C>T Gly126Gly
M0086652 FDNOHDLK_00153 121272 5 Skin 0.22 protein_coding synonymous_variant LOW 360A>G Leu120Leu
M0086653 FDNOHDLK_00153 121278 5 Skin 0.22 protein_coding synonymous_variant LOW 354T>C Asp118Asp
M0086654 FDNOHDLK_00153 121305 5 Skin 0.22 protein_coding synonymous_variant LOW 327C>G Gly109Gly
M0086655 FDNOHDLK_00153 121341 5 Skin 0.22 protein_coding synonymous_variant LOW 291C>T Phe97Phe
M0086656 FDNOHDLK_00153 121365 5 Skin 0.22 protein_coding synonymous_variant LOW 267T>C Thr89Thr
M0086657 FDNOHDLK_00153 121371 5 Skin 0.22 protein_coding synonymous_variant LOW 261G>A Gln87Gln
M0086658 FDNOHDLK_00153 121383 5 Skin 0.22 protein_coding synonymous_variant LOW 249T>C Ser83Ser
M0086659 FDNOHDLK_00153 121434 5 Skin 0.22 protein_coding synonymous_variant LOW 198C>G Thr66Thr
M0086660 FDNOHDLK_00153 121467 5 Skin 0.22 protein_coding synonymous_variant LOW 165G>C Ser55Ser
M0086661 FDNOHDLK_00153 121469 5 Skin 0.22 protein_coding missense_variant MODERATE 163T>A Ser55Thr
M0086662 FDNOHDLK_00153 121479 5 Skin 0.22 protein_coding synonymous_variant LOW 153T>C Asn51Asn
M0086663 FDNOHDLK_00153 121511 4 Skin 0.17 protein_coding synonymous_variant LOW 121C>T Leu41Leu
M0086664 FDNOHDLK_00153 121560 5 Skin 0.22 protein_coding synonymous_variant LOW 72G>A Gln24Gln
M0086665 FDNOHDLK_00153 121571 5 Skin 0.22 protein_coding missense_variant MODERATE 61G>A Val21Ile
M0086666 FDNOHDLK_00151 121674 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2668A>C None
M0086667 FDNOHDLK_00151 121690 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2684T>C None
M0086668 FDNOHDLK_00151 121766 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2760T>C None
M0086669 FDNOHDLK_00151 121788 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2782C>T None
M0086670 FDNOHDLK_00151 121789 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2783A>G None
M0086671 FDNOHDLK_00151 121791 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2785G>A None
M0086672 FDNOHDLK_00151 121798 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2792A>G None
M0086673 FDNOHDLK_00151 121810 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2804C>T None
M0086674 FDNOHDLK_00151 121829 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2823G>A None
M0086675 FDNOHDLK_00151 121840 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2834T>A None
M0086676 FDNOHDLK_00151 121848 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2842G>T None
M0086677 FDNOHDLK_00151 121850 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2844T>G None
M0086678 FDNOHDLK_00151 121853 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2847T>C None
M0086679 FDNOHDLK_00151 121854 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2848G>A None
M0086680 FDNOHDLK_00151 121861 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2855T>C None
M0086681 FDNOHDLK_00151 121863 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2857T>C None
M0086682 FDNOHDLK_00151 121889 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2883C>T None
M0086683 FDNOHDLK_00151 121890 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2884G>T None
M0086684 FDNOHDLK_00151 121943 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2937A>T None
M0086685 FDNOHDLK_00154 122063 4 Skin 0.17 protein_coding missense_variant MODERATE 28T>C Ser10Pro
M0086686 FDNOHDLK_00154 122072 4 Skin 0.17 protein_coding missense_variant MODERATE 37T>C Ser13Pro
M0086687 FDNOHDLK_00154 122074 4 Skin 0.17 protein_coding synonymous_variant LOW 39T>C Ser13Ser
M0086688 FDNOHDLK_00154 122113 4 Skin 0.17 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0086689 FDNOHDLK_00154 122119 4 Skin 0.17 protein_coding synonymous_variant LOW 84A>G Gly28Gly
M0086690 FDNOHDLK_00154 122120 4 Skin 0.17 protein_coding synonymous_variant LOW 85C>T Leu29Leu
M0086691 FDNOHDLK_00154 122128 4 Skin 0.17 protein_coding synonymous_variant LOW 93A>G Ala31Ala
M0086692 FDNOHDLK_00154 122137 4 Skin 0.17 protein_coding synonymous_variant LOW 102T>C Ala34Ala
M0086693 FDNOHDLK_00154 122194 4 Skin 0.17 protein_coding synonymous_variant LOW 159T>A Pro53Pro
M0086694 FDNOHDLK_00154 122210 4 Skin 0.17 protein_coding synonymous_variant LOW 175C>A Arg59Arg
M0086695 FDNOHDLK_00154 122218 4 Skin 0.17 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0086696 FDNOHDLK_00154 122677 4 Skin 0.17 protein_coding synonymous_variant LOW 642G>C Thr214Thr
M0086697 FDNOHDLK_00154 122680 4 Skin 0.17 protein_coding synonymous_variant LOW 645C>G Gly215Gly
M0086698 FDNOHDLK_00154 122722 4 Skin 0.17 protein_coding synonymous_variant LOW 687A>C Leu229Leu
M0086699 FDNOHDLK_00154 122725 4 Skin 0.17 protein_coding synonymous_variant LOW 690T>C Ser230Ser
M0086700 FDNOHDLK_00154 122737 4 Skin 0.17 protein_coding synonymous_variant LOW 702G>A Pro234Pro
M0086701 FDNOHDLK_00154 122743 4 Skin 0.17 protein_coding synonymous_variant LOW 708T>C Arg236Arg
M0086702 FDNOHDLK_00154 122755 4 Skin 0.17 protein_coding synonymous_variant LOW 720A>G Leu240Leu
M0086703 FDNOHDLK_00154 122761 4 Skin 0.17 protein_coding synonymous_variant LOW 726A>T Ala242Ala
M0086704 FDNOHDLK_00154 122773 4 Skin 0.17 protein_coding synonymous_variant LOW 738G>A Gln246Gln
M0086705 FDNOHDLK_00154 122776 4 Skin 0.17 protein_coding synonymous_variant LOW 741C>A Thr247Thr
M0086706 FDNOHDLK_00154 122788 4 Skin 0.17 protein_coding synonymous_variant LOW 753C>T Arg251Arg
M0086707 FDNOHDLK_00154 122800 4 Skin 0.17 protein_coding synonymous_variant LOW 765A>G Val255Val
M0086708 FDNOHDLK_00154 122806 4 Skin 0.17 protein_coding synonymous_variant LOW 771C>A Ile257Ile
M0086709 FDNOHDLK_00154 122869 4 Skin 0.17 protein_coding synonymous_variant LOW 834C>T Ser278Ser
M0086710 FDNOHDLK_00154 122896 4 Skin 0.17 protein_coding synonymous_variant LOW 861A>G Val287Val
M0086711 FDNOHDLK_00154 122899 4 Skin 0.17 protein_coding synonymous_variant LOW 864A>C Arg288Arg
M0086712 FDNOHDLK_00154 122905 4 Skin 0.17 protein_coding synonymous_variant LOW 870A>G Arg290Arg
M0086713 FDNOHDLK_00154 122917 4 Skin 0.17 protein_coding synonymous_variant LOW 882T>G Val294Val
M0086714 FDNOHDLK_00154 122944 4 Skin 0.17 protein_coding synonymous_variant LOW 909T>C Phe303Phe
M0086715 FDNOHDLK_00154 122950 4 Skin 0.17 protein_coding synonymous_variant LOW 915C>T Arg305Arg
M0086716 FDNOHDLK_00154 122965 4 Skin 0.17 protein_coding synonymous_variant LOW 930C>T Ile310Ile
M0086717 FDNOHDLK_00154 122980 4 Skin 0.17 protein_coding synonymous_variant LOW 945A>T Arg315Arg
M0086718 FDNOHDLK_00154 122998 4 Skin 0.17 protein_coding synonymous_variant LOW 963A>G Arg321Arg
M0086719 FDNOHDLK_00154 123013 4 Skin 0.17 protein_coding synonymous_variant LOW 978C>T Ala326Ala
M0086720 FDNOHDLK_00154 123016 4 Skin 0.17 protein_coding synonymous_variant LOW 981G>T Val327Val
M0086721 FDNOHDLK_00154 123058 4 Skin 0.17 protein_coding synonymous_variant LOW 1023G>A Gln341Gln
M0086722 FDNOHDLK_00154 123109 4 Skin 0.17 protein_coding synonymous_variant LOW 1074G>T Pro358Pro
M0086723 FDNOHDLK_00154 123133 4 Skin 0.17 protein_coding synonymous_variant LOW 1098A>C Thr366Thr
M0086724 FDNOHDLK_00154 123166 3 Skin 0.13 protein_coding synonymous_variant LOW 1131C>T Gly377Gly
M0086725 FDNOHDLK_00154 123292 4 Skin 0.17 protein_coding synonymous_variant LOW 1257T>C Thr419Thr
M0086726 FDNOHDLK_00154 123299 4 Skin 0.17 protein_coding missense_variant MODERATE 1264G>A Ala422Thr
M0086727 FDNOHDLK_00151 123362 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4356A>G None
M0086728 FDNOHDLK_00155 123480 4 Skin 0.17 protein_coding synonymous_variant LOW 105C>T Thr35Thr
M0086729 FDNOHDLK_00155 123504 4 Skin 0.17 protein_coding synonymous_variant LOW 129T>C Gly43Gly
M0086730 FDNOHDLK_00155 123573 4 Skin 0.17 protein_coding synonymous_variant LOW 198T>C Gly66Gly
M0086731 FDNOHDLK_00155 123588 4 Skin 0.17 protein_coding synonymous_variant LOW 213T>C Gly71Gly
M0086732 FDNOHDLK_00155 123611 4 Skin 0.17 protein_coding missense_variant MODERATE 236G>C Arg79Thr
M0086733 FDNOHDLK_00155 123763 3 Skin 0.13 protein_coding missense_variant MODERATE 388A>G Thr130Ala
M0086734 FDNOHDLK_00155 123771 3 Skin 0.13 protein_coding synonymous_variant LOW 396A>G Gln132Gln
M0086735 FDNOHDLK_00155 123775 3 Skin 0.13 protein_coding missense_variant MODERATE 400G>A Asp134Asn
M0086736 FDNOHDLK_00155 123777 3 Skin 0.13 protein_coding synonymous_variant LOW 402T>C Asp134Asp
M0086737 FDNOHDLK_00155 123783 3 Skin 0.13 protein_coding synonymous_variant LOW 408T>C Gly136Gly
M0086738 FDNOHDLK_00155 123795 3 Skin 0.13 protein_coding synonymous_variant LOW 420A>G Lys140Lys
M0086739 FDNOHDLK_00155 123798 3 Skin 0.13 protein_coding synonymous_variant LOW 423G>A Lys141Lys
M0086740 FDNOHDLK_00155 123801 3 Skin 0.13 protein_coding synonymous_variant LOW 426T>G Gly142Gly
M0086741 FDNOHDLK_00155 123804 3 Skin 0.13 protein_coding synonymous_variant LOW 429G>A Gln143Gln
M0086742 FDNOHDLK_00155 123813 3 Skin 0.13 protein_coding synonymous_variant LOW 438T>G Ala146Ala
M0086743 FDNOHDLK_00155 123900 3 Skin 0.13 protein_coding synonymous_variant LOW 525G>A Glu175Glu
M0086744 FDNOHDLK_00155 123912 3 Skin 0.13 protein_coding synonymous_variant LOW 537G>A Gln179Gln
M0086745 FDNOHDLK_00155 123930 3 Skin 0.13 protein_coding synonymous_variant LOW 555T>C Ile185Ile
M0086746 FDNOHDLK_00155 123933 3 Skin 0.13 protein_coding synonymous_variant LOW 558C>T Ser186Ser
M0086747 FDNOHDLK_00155 124014 3 Skin 0.13 protein_coding synonymous_variant LOW 639T>C Gly213Gly
M0086748 FDNOHDLK_00155 124017 3 Skin 0.13 protein_coding synonymous_variant LOW 642G>A Ala214Ala
M0086749 FDNOHDLK_00155 124026 3 Skin 0.13 protein_coding synonymous_variant LOW 651T>C Ala217Ala
M0086750 FDNOHDLK_00155 124059 3 Skin 0.13 protein_coding synonymous_variant LOW 684A>G Glu228Glu
M0086751 FDNOHDLK_00155 124065 3 Skin 0.13 protein_coding synonymous_variant LOW 690A>C Arg230Arg
M0086752 FDNOHDLK_00155 124068 3 Skin 0.13 protein_coding synonymous_variant LOW 693C>T Ala231Ala
M0086753 FDNOHDLK_00155 124071 3 Skin 0.13 protein_coding synonymous_variant LOW 696T>C Pro232Pro
M0086754 FDNOHDLK_00155 124086 3 Skin 0.13 protein_coding synonymous_variant LOW 711G>A Val237Val
M0086755 FDNOHDLK_00155 124107 3 Skin 0.13 protein_coding synonymous_variant LOW 732T>C Val244Val
M0086756 FDNOHDLK_00155 124170 3 Skin 0.13 protein_coding synonymous_variant LOW 795A>G Ala265Ala
M0086757 FDNOHDLK_00155 124179 3 Skin 0.13 protein_coding synonymous_variant LOW 804C>A Ala268Ala
M0086758 FDNOHDLK_00155 124182 3 Skin 0.13 protein_coding synonymous_variant LOW 807C>T Val269Val
M0086759 FDNOHDLK_00155 124188 3 Skin 0.13 protein_coding synonymous_variant LOW 813T>G Pro271Pro
M0086760 FDNOHDLK_00155 124203 3 Skin 0.13 protein_coding synonymous_variant LOW 828A>G Lys276Lys
M0086761 FDNOHDLK_00155 124215 3 Skin 0.13 protein_coding synonymous_variant LOW 840T>C Gly280Gly
M0086762 FDNOHDLK_00155 124221 3 Skin 0.13 protein_coding synonymous_variant LOW 846G>A Ala282Ala
M0086763 FDNOHDLK_00155 124281 3 Skin 0.13 protein_coding synonymous_variant LOW 906G>C Gly302Gly
M0086764 FDNOHDLK_00155 124344 3 Skin 0.13 protein_coding synonymous_variant LOW 969T>C Gly323Gly
M0086765 FDNOHDLK_00155 124368 3 Skin 0.13 protein_coding synonymous_variant LOW 993G>A Val331Val
M0086766 FDNOHDLK_00155 124383 3 Skin 0.13 protein_coding synonymous_variant LOW 1008T>C Thr336Thr
M0086767 FDNOHDLK_00155 124389 3 Skin 0.13 protein_coding synonymous_variant LOW 1014A>G Gln338Gln
M0086768 FDNOHDLK_00155 124425 3 Skin 0.13 protein_coding synonymous_variant LOW 1050A>T Ala350Ala
M0086769 FDNOHDLK_00155 124449 3 Skin 0.13 protein_coding synonymous_variant LOW 1074C>T Pro358Pro
M0086770 FDNOHDLK_00155 124476 3 Skin 0.13 protein_coding synonymous_variant LOW 1101G>C Gly367Gly
M0086771 FDNOHDLK_00155 124506 3 Skin 0.13 protein_coding synonymous_variant LOW 1131T>C Arg377Arg
M0086772 FDNOHDLK_00155 124512 3 Skin 0.13 protein_coding synonymous_variant LOW 1137T>C Asp379Asp
M0086773 FDNOHDLK_00155 124528 3 Skin 0.13 protein_coding missense_variant MODERATE 1153G>A Val385Ile
M0086774 FDNOHDLK_00156 124707 3 Skin 0.13 protein_coding synonymous_variant LOW 57T>C Ala19Ala
M0086775 FDNOHDLK_00156 124758 3 Skin 0.13 protein_coding synonymous_variant LOW 108T>C Ile36Ile
M0086776 FDNOHDLK_00156 124815 3 Skin 0.13 protein_coding synonymous_variant LOW 165C>T Gly55Gly
M0086777 FDNOHDLK_00156 124818 3 Skin 0.13 protein_coding synonymous_variant LOW 168T>C Tyr56Tyr
M0086778 FDNOHDLK_00156 124824 3 Skin 0.13 protein_coding synonymous_variant LOW 174G>C Pro58Pro
M0086779 FDNOHDLK_00156 124863 3 Skin 0.13 protein_coding synonymous_variant LOW 213A>G Thr71Thr
M0086780 FDNOHDLK_00156 124866 3 Skin 0.13 protein_coding synonymous_variant LOW 216A>C Ala72Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
FDNOHDLK_00156 Zinc (Zn), Cadmium (Cd) 77.5 0 1 1048 0.9953 0.9971 experiment
FDNOHDLK_00218 Copper (Cu) 86.2 2.9e-110 1 225 1.0000 0.9740 experiment
FDNOHDLK_00233 Copper (Cu), Silver (Ag) 75.2 5.7e-278 1 613 1.0131 1.0197 experiment
FDNOHDLK_00295 Mercury (Hg) 77.7 9.4e-243 1 560 1.0018 1.0000 experiment
FDNOHDLK_00297 Mercury (Hg) 77.2 2e-33 1 92 1.0000 1.0110 experiment
FDNOHDLK_00298 Mercury (Hg) 84.5 1.5e-54 1 116 1.0000 1.0000 experiment
FDNOHDLK_00299 Mercury (Hg) 77.7 2.1e-58 1 139 1.0000 0.9653 experiment
FDNOHDLK_00141 Arsenic (As) 78.2 5.6e-146 5 343 0.9603 0.9443 prediction
FDNOHDLK_00142 Arsenic (As) 82.8 2.9e-114 1 238 1.0000 1.0000 prediction
FDNOHDLK_00156 Zinc (Zn), Cadmium (Cd) 78 0 1 1048 0.9953 0.9971 prediction
FDNOHDLK_00217 Copper (Cu) 100 2.1e-257 1 458 1.0000 1.0000 prediction
FDNOHDLK_00218 Copper (Cu) 100 1.7e-124 1 225 1.0000 1.0000 prediction
FDNOHDLK_00233 Copper (Cu), Silver (Ag) 99.3 0 1 613 1.0000 1.0000 prediction
FDNOHDLK_00235 Copper (Cu) 100 5.2e-211 1 363 1.0000 1.0000 prediction
FDNOHDLK_00295 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 100 2.19999999999959e-312 1 560 1.0000 1.0000 prediction
FDNOHDLK_00297 Mercury (Hg) 100 9.8e-42 1 92 1.0000 1.0000 prediction
FDNOHDLK_00298 Mercury (Hg) 100 1.3e-59 1 116 1.0000 1.0000 prediction
FDNOHDLK_00299 Mercury (Hg) 100 3e-74 1 139 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
FDNOHDLK_00017 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
FDNOHDLK_00148 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
FDNOHDLK_00179 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
FDNOHDLK_00249 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FDNOHDLK_00164 AUY34150.1|GT2 100 2.34e-237 1 327 1 1
FDNOHDLK_00165 ATP52061.1|GT83 100 0 1 484 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FDNOHDLK_00156 2.A.6.1.5 99.3 0 1 1053 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
FDNOHDLK_00158 3.A.3.6.11 96.5 0 1 665 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
FDNOHDLK_00161 1.B.5.1.1 73.4 1.2e-191 5 435 0.9908 0.9750 1 Channels/Pores 1.B β-Barrel Porins 1.B.5 The Pseudomonas OprP Porin (POP) Family
FDNOHDLK_00297 1.A.72.3.1 77.2 9.8e-32 1 92 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
FDNOHDLK_00298 1.A.72.3.1 80.2 5e-49 1 116 1.0000 1.2747 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily