Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C360
  Reference Plasmid   NZ_AP019717.1
  Reference Plasmid Size   770199
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0154346 BGCEOJMC_00303 337181 3 Gut 0.16 protein_coding missense_variant MODERATE 223G>A Val75Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BGCEOJMC_00484 PHI:9236 CdPpiB (CD630_00330) 82.3 2.1e-291 1 548 1.0000 1.0000 rodents pseudomembranous colitis cyclophilin-type peptidyl-prolyl-cis/trans-isomerase increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BGCEOJMC_00056 AXB86948.1|GH1 100 0 1 479 1 1
BGCEOJMC_00058 BBK78598.1|CBM4|GH16_3 100 0 1 1231 1 1
BGCEOJMC_00106 BBK78646.1|CE4 100 7.83e-187 1 252 1 1
BGCEOJMC_00133 QMW93239.1|GH53 100 1.07e-265 1 341 1 1
BGCEOJMC_00134 QMW93240.1|GH42 100 0 1 687 1 1
BGCEOJMC_00156 AXB87048.1|GH4 100 0 1 444 1 1
BGCEOJMC_00174 QUF85248.1|GH1 100 0 1 474 1 1
BGCEOJMC_00200 QMW93302.1|PL1|PL9_1 100 0 1 1109 1 1
BGCEOJMC_00201 QMW93303.1|CE8|PL9_1 100 0 1 1367 1 1
BGCEOJMC_00376 BBK78922.1|GH31 100 0 1 781 1 1
BGCEOJMC_00377 QMW92848.1|GH3 100 0 1 707 1 1
BGCEOJMC_00379 QMW92850.1|GH95 100 0 1 799 1 1
BGCEOJMC_00389 BBK78934.1|GT4 100 0 1 622 1 1
BGCEOJMC_00391 BBK78936.1|GT2|GT4 100 0 1 606 1 1
BGCEOJMC_00430 BBK78975.1|GH32 100 0 1 491 1 1
BGCEOJMC_00472 BBK79018.1|GH38 100 0 1 870 1 1
BGCEOJMC_00483 BBK79029.1|GH5_44 100 1.85e-307 1 395 1 1
BGCEOJMC_00484 BBK79030.1|GH43_11 100 0 1 548 1 1
BGCEOJMC_00513 QMW92969.1|CE4 100 2.38e-199 10 324 0.9722 1
BGCEOJMC_00577 QCJ08657.1|GH13_29 100 0 1 552 1 1
BGCEOJMC_00655 BBK79202.1|GH170 100 1.48e-268 1 360 1 1
BGCEOJMC_00660 BBK79207.1|GH4 100 8.12000001553657e-316 1 436 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BGCEOJMC_00342 4.A.6.1.6 73.2 4.7e-137 1 325 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
BGCEOJMC_00343 4.A.6.1.6 76 8.4e-108 1 268 1.0000 0.8364 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
BGCEOJMC_00344 4.A.6.1.15 75.9 1.7e-136 1 303 1.0000 0.9439 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family