Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C362
  Reference Plasmid   NZ_AP019726.1
  Reference Plasmid Size   119377
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0155513 NFNKCEKM_00057 51588 50 Gut 0.20 protein_coding missense_variant MODERATE 165T>A Phe55Leu
M0155514 NFNKCEKM_00046 41581 7 Gut 0.03 protein_coding missense_variant MODERATE 1320T>A His440Gln
M0155515 NFNKCEKM_00046 41587 7 Gut 0.03 protein_coding synonymous_variant LOW 1314G>C Thr438Thr
M0155516 NFNKCEKM_00046 41622 8 Gut 0.03 protein_coding missense_variant MODERATE 1279G>A Glu427Lys
M0155517 NFNKCEKM_00046 41800 6 Gut 0.02 protein_coding synonymous_variant LOW 1101G>A Gln367Gln
M0155518 NFNKCEKM_00046 41857 5 Gut 0.02 protein_coding synonymous_variant LOW 1044A>G Pro348Pro
M0155519 NFNKCEKM_00046 41872 3 Gut 0.01 protein_coding synonymous_variant LOW 1029G>A Lys343Lys
M0155520 NFNKCEKM_00046 41899 6 Gut 0.02 protein_coding missense_variant MODERATE 1002A>C Leu334Phe
M0155521 NFNKCEKM_00046 41917 4 Gut 0.02 protein_coding synonymous_variant LOW 984C>T Asp328Asp
M0155522 NFNKCEKM_00046 41926 4 Gut 0.02 protein_coding synonymous_variant LOW 975G>T Arg325Arg
M0155523 NFNKCEKM_00046 41971 3 Gut 0.01 protein_coding missense_variant MODERATE 930G>T Glu310Asp
M0155524 NFNKCEKM_00046 42079 4 Gut 0.02 protein_coding synonymous_variant LOW 822G>A Lys274Lys
M0155525 NFNKCEKM_00046 42093 4 Gut 0.02 protein_coding missense_variant MODERATE 808G>A Glu270Lys
M0155526 NFNKCEKM_00046 42109 6 Gut 0.02 protein_coding synonymous_variant LOW 792A>C Arg264Arg
M0155527 NFNKCEKM_00046 42286 6 Gut 0.02 protein_coding synonymous_variant LOW 615G>A Gly205Gly
M0155528 NFNKCEKM_00046 42478 6 Gut 0.02 protein_coding synonymous_variant LOW 423T>G Thr141Thr
M0155529 NFNKCEKM_00044 45191 11 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4314C>T None
M0155530 NFNKCEKM_00044 45198 11 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4321T>G None
M0155531 NFNKCEKM_00044 45203 11 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4326A>C None
M0155532 NFNKCEKM_00101 89129 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -1630C>T None
M0155533 NFNKCEKM_00059 52949 14 Gut 0.05 protein_coding synonymous_variant LOW 360G>A Lys120Lys
M0155534 NFNKCEKM_00060 54725 76 Gut 0.30 protein_coding synonymous_variant LOW 681A>G Leu227Leu
M0155535 NFNKCEKM_00063 56554 18 Gut 0.07 protein_coding synonymous_variant LOW 18A>T Leu6Leu
M0155536 NFNKCEKM_00008 6259 3 Gut 0.01 protein_coding missense_variant MODERATE 440G>A Arg147Lys
M0155537 NFNKCEKM_00037 41251 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4998C>A None
M0155538 NFNKCEKM_00044 45179 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4302A>G None
M0155539 NFNKCEKM_00046 46817 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3917G>A None
M0155540 NFNKCEKM_00046 46845 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3945T>G None
M0155541 NFNKCEKM_00046 46862 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3962A>G None
M0155542 NFNKCEKM_00046 46870 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3970T>C None
M0155543 NFNKCEKM_00052 47023 7 Gut 0.03 protein_coding missense_variant MODERATE 23T>C Ile8Thr
M0155544 NFNKCEKM_00052 47105 7 Gut 0.03 protein_coding synonymous_variant LOW 105T>C Asn35Asn
M0155545 NFNKCEKM_00052 47771 7 Gut 0.03 protein_coding synonymous_variant LOW 771T>A Ala257Ala
M0155546 NFNKCEKM_00052 47858 7 Gut 0.03 protein_coding synonymous_variant LOW 858G>A Thr286Thr
M0155547 NFNKCEKM_00052 47903 7 Gut 0.03 protein_coding synonymous_variant LOW 903A>G Lys301Lys
M0155548 NFNKCEKM_00047 47924 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4717T>C None
M0155549 NFNKCEKM_00047 47933 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4726G>C None
M0155550 NFNKCEKM_00047 47977 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4770T>C None
M0155551 NFNKCEKM_00047 47992 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4785T>A None
M0155552 NFNKCEKM_00053 48095 7 Gut 0.03 protein_coding synonymous_variant LOW 99C>T Pro33Pro
M0155553 NFNKCEKM_00053 48098 7 Gut 0.03 protein_coding synonymous_variant LOW 102A>G Glu34Glu
M0155554 NFNKCEKM_00053 48101 8 Gut 0.03 protein_coding synonymous_variant LOW 105C>G Thr35Thr
M0155555 NFNKCEKM_00053 48191 8 Gut 0.03 protein_coding synonymous_variant LOW 195A>G Leu65Leu
M0155556 NFNKCEKM_00053 48251 7 Gut 0.03 protein_coding synonymous_variant LOW 255T>C Gly85Gly
M0155557 NFNKCEKM_00053 48331 7 Gut 0.03 protein_coding missense_variant MODERATE 335T>C Met112Thr
M0155558 NFNKCEKM_00053 48430 7 Gut 0.03 protein_coding missense_variant MODERATE 434A>G Asn145Ser
M0155559 NFNKCEKM_00053 48599 7 Gut 0.03 protein_coding synonymous_variant LOW 603C>T Tyr201Tyr
M0155560 NFNKCEKM_00053 48620 7 Gut 0.03 protein_coding synonymous_variant LOW 624A>G Lys208Lys
M0155561 NFNKCEKM_00053 48631 7 Gut 0.03 protein_coding missense_variant MODERATE 635C>T Ala212Val
M0155562 NFNKCEKM_00053 48641 7 Gut 0.03 protein_coding synonymous_variant LOW 645C>T Cys215Cys
M0155563 NFNKCEKM_00053 48650 7 Gut 0.03 protein_coding synonymous_variant LOW 654C>A Pro218Pro
M0155564 NFNKCEKM_00053 48656 7 Gut 0.03 protein_coding synonymous_variant LOW 660G>T Leu220Leu
M0155565 NFNKCEKM_00053 48773 7 Gut 0.03 protein_coding synonymous_variant LOW 777T>A Thr259Thr
M0155566 NFNKCEKM_00053 48788 7 Gut 0.03 protein_coding synonymous_variant LOW 792G>A Thr264Thr
M0155567 NFNKCEKM_00053 48809 7 Gut 0.03 protein_coding synonymous_variant LOW 813C>T Ser271Ser
M0155568 NFNKCEKM_00053 48821 7 Gut 0.03 protein_coding synonymous_variant LOW 825T>C Tyr275Tyr
M0155569 NFNKCEKM_00053 48830 7 Gut 0.03 protein_coding synonymous_variant LOW 834C>T Cys278Cys
M0155570 NFNKCEKM_00053 48835 7 Gut 0.03 protein_coding missense_variant MODERATE 839T>C Met280Thr
M0155571 NFNKCEKM_00053 48848 7 Gut 0.03 protein_coding synonymous_variant LOW 852T>C Gly284Gly
M0155572 NFNKCEKM_00053 48851 7 Gut 0.03 protein_coding synonymous_variant LOW 855G>A Lys285Lys
M0155573 NFNKCEKM_00053 48860 7 Gut 0.03 protein_coding synonymous_variant LOW 864A>G Lys288Lys
M0155574 NFNKCEKM_00053 48863 7 Gut 0.03 protein_coding synonymous_variant LOW 867G>C Gly289Gly
M0155575 NFNKCEKM_00053 48866 7 Gut 0.03 protein_coding synonymous_variant LOW 870G>A Leu290Leu
M0155576 NFNKCEKM_00053 48872 7 Gut 0.03 protein_coding synonymous_variant LOW 876A>G Arg292Arg
M0155577 NFNKCEKM_00053 48875 7 Gut 0.03 protein_coding synonymous_variant LOW 879T>C Ser293Ser
M0155578 NFNKCEKM_00053 48884 7 Gut 0.03 protein_coding synonymous_variant LOW 888T>C Asn296Asn
M0155579 NFNKCEKM_00053 49071 7 Gut 0.03 protein_coding synonymous_variant LOW 1075C>A Arg359Arg
M0155580 NFNKCEKM_00053 49095 7 Gut 0.03 protein_coding synonymous_variant LOW 1099C>T Leu367Leu
M0155581 NFNKCEKM_00053 49097 7 Gut 0.03 protein_coding synonymous_variant LOW 1101G>A Leu367Leu
M0155582 NFNKCEKM_00053 49102 7 Gut 0.03 protein_coding splice_region_variant&stop_retained_variant LOW 1106A>G Ter369Ter
M0155583 NFNKCEKM_00049 49108 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -2802G>A None
M0155584 NFNKCEKM_00049 49112 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -2806A>G None
M0155585 NFNKCEKM_00054 49148 7 Gut 0.03 protein_coding synonymous_variant LOW 36T>C Gly12Gly
M0155586 NFNKCEKM_00054 49183 7 Gut 0.03 protein_coding missense_variant MODERATE 71T>C Val24Ala
M0155587 NFNKCEKM_00054 49202 7 Gut 0.03 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0155588 NFNKCEKM_00054 49259 7 Gut 0.03 protein_coding synonymous_variant LOW 147T>C Asn49Asn
M0155589 NFNKCEKM_00054 49269 7 Gut 0.03 protein_coding missense_variant MODERATE 157A>G Lys53Glu
M0155590 NFNKCEKM_00054 49270 7 Gut 0.03 protein_coding missense_variant MODERATE 158A>G Lys53Arg
M0155591 NFNKCEKM_00054 49277 7 Gut 0.03 protein_coding missense_variant MODERATE 165C>A Asp55Glu
M0155592 NFNKCEKM_00054 49278 7 Gut 0.03 protein_coding missense_variant MODERATE 166A>G Ile56Val
M0155593 NFNKCEKM_00054 49280 7 Gut 0.03 protein_coding synonymous_variant LOW 168C>T Ile56Ile
M0155594 NFNKCEKM_00054 49288 7 Gut 0.03 protein_coding missense_variant MODERATE 176G>A Cys59Tyr
M0155595 NFNKCEKM_00054 49289 7 Gut 0.03 protein_coding synonymous_variant LOW 177T>C Cys59Cys
M0155596 NFNKCEKM_00054 49301 7 Gut 0.03 protein_coding synonymous_variant LOW 189A>G Glu63Glu
M0155597 NFNKCEKM_00054 49305 7 Gut 0.03 protein_coding missense_variant MODERATE 193A>G Arg65Gly
M0155598 NFNKCEKM_00054 49322 7 Gut 0.03 protein_coding synonymous_variant LOW 210A>G Val70Val
M0155599 NFNKCEKM_00054 49346 7 Gut 0.03 protein_coding synonymous_variant LOW 234T>C Ala78Ala
M0155600 NFNKCEKM_00059 52922 12 Gut 0.05 protein_coding synonymous_variant LOW 333C>T Asp111Asp
M0155601 NFNKCEKM_00059 52926 12 Gut 0.05 protein_coding synonymous_variant LOW 337C>A Arg113Arg
M0155602 NFNKCEKM_00059 52927 12 Gut 0.05 protein_coding missense_variant MODERATE 338G>A Arg113Gln
M0155603 NFNKCEKM_00059 52937 12 Gut 0.05 protein_coding synonymous_variant LOW 348G>A Gln116Gln
M0155604 NFNKCEKM_00059 52946 12 Gut 0.05 protein_coding synonymous_variant LOW 357A>G Glu119Glu
M0155605 NFNKCEKM_00059 52950 12 Gut 0.05 protein_coding missense_variant MODERATE 361G>A Ala121Thr
M0155606 NFNKCEKM_00059 52951 12 Gut 0.05 protein_coding missense_variant MODERATE 362C>T Ala121Val
M0155607 NFNKCEKM_00059 52952 13 Gut 0.05 protein_coding synonymous_variant LOW 363A>G Ala121Ala
M0155608 NFNKCEKM_00059 52958 13 Gut 0.05 protein_coding synonymous_variant LOW 369A>C Ala123Ala
M0155609 NFNKCEKM_00059 52985 13 Gut 0.05 protein_coding synonymous_variant LOW 396C>T Ser132Ser
M0155610 NFNKCEKM_00059 53123 13 Gut 0.05 protein_coding synonymous_variant LOW 534T>A Ala178Ala
M0155611 NFNKCEKM_00059 53213 13 Gut 0.05 protein_coding synonymous_variant LOW 624C>T Thr208Thr
M0155612 NFNKCEKM_00059 53219 13 Gut 0.05 protein_coding missense_variant MODERATE 630G>A Met210Ile
M0155613 NFNKCEKM_00059 53266 13 Gut 0.05 protein_coding missense_variant MODERATE 677A>G Tyr226Cys
M0155614 NFNKCEKM_00059 53282 13 Gut 0.05 protein_coding synonymous_variant LOW 693G>A Gly231Gly
M0155615 NFNKCEKM_00059 53294 13 Gut 0.05 protein_coding missense_variant MODERATE 705T>G Asn235Lys
M0155616 NFNKCEKM_00059 53352 13 Gut 0.05 protein_coding missense_variant MODERATE 763A>C Ile255Leu
M0155617 NFNKCEKM_00059 53369 13 Gut 0.05 protein_coding synonymous_variant LOW 780G>C Pro260Pro
M0155618 NFNKCEKM_00059 53372 13 Gut 0.05 protein_coding synonymous_variant LOW 783T>C Asn261Asn
M0155619 NFNKCEKM_00059 53390 13 Gut 0.05 protein_coding synonymous_variant LOW 801G>T Arg267Arg
M0155620 NFNKCEKM_00059 53402 13 Gut 0.05 protein_coding synonymous_variant LOW 813A>G Lys271Lys
M0155621 NFNKCEKM_00059 53410 13 Gut 0.05 protein_coding missense_variant MODERATE 821C>T Pro274Leu
M0155622 NFNKCEKM_00059 53766 15 Gut 0.06 protein_coding missense_variant MODERATE 1177G>A Val393Ile
M0155623 NFNKCEKM_00059 53849 19 Gut 0.07 protein_coding missense_variant MODERATE 1260G>A Met420Ile
M0155624 NFNKCEKM_00059 53936 16 Gut 0.06 protein_coding synonymous_variant LOW 1347A>G Lys449Lys
M0155625 NFNKCEKM_00059 53956 20 Gut 0.08 protein_coding missense_variant MODERATE 1367C>T Thr456Ile
M0155626 NFNKCEKM_00056 53989 16 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -2483A>T None
M0155627 NFNKCEKM_00056 53995 20 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2489T>C None
M0155628 NFNKCEKM_00056 54026 14 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -2520T>G None
M0155629 NFNKCEKM_00056 54028 17 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -2522A>G None
M0155630 NFNKCEKM_00056 54029 17 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -2523T>G None
M0155631 NFNKCEKM_00060 54095 17 Gut 0.07 protein_coding synonymous_variant LOW 51A>G Arg17Arg
M0155632 NFNKCEKM_00060 54104 17 Gut 0.07 protein_coding synonymous_variant LOW 60T>C Cys20Cys
M0155633 NFNKCEKM_00060 54134 16 Gut 0.06 protein_coding synonymous_variant LOW 90C>T Ser30Ser
M0155634 NFNKCEKM_00060 54170 15 Gut 0.06 protein_coding synonymous_variant LOW 126A>T Pro42Pro
M0155635 NFNKCEKM_00060 54206 16 Gut 0.06 protein_coding synonymous_variant LOW 162T>C Cys54Cys
M0155636 NFNKCEKM_00060 54237 16 Gut 0.06 protein_coding missense_variant MODERATE 193G>A Glu65Lys
M0155637 NFNKCEKM_00060 54401 18 Gut 0.07 protein_coding synonymous_variant LOW 357C>T Ala119Ala
M0155638 NFNKCEKM_00060 54479 17 Gut 0.07 protein_coding synonymous_variant LOW 435C>T Thr145Thr
M0155639 NFNKCEKM_00060 54502 18 Gut 0.07 protein_coding missense_variant MODERATE 458G>A Arg153Gln
M0155640 NFNKCEKM_00060 54543 19 Gut 0.07 protein_coding missense_variant MODERATE 499A>G Lys167Glu
M0155641 NFNKCEKM_00060 54575 15 Gut 0.06 protein_coding synonymous_variant LOW 531T>C Asn177Asn
M0155642 NFNKCEKM_00060 54610 17 Gut 0.07 protein_coding missense_variant MODERATE 566A>G Asp189Gly
M0155643 NFNKCEKM_00060 54647 16 Gut 0.06 protein_coding synonymous_variant LOW 603T>C His201His
M0155644 NFNKCEKM_00060 54667 20 Gut 0.08 protein_coding missense_variant MODERATE 623A>G Asn208Ser
M0155645 NFNKCEKM_00060 54669 16 Gut 0.06 protein_coding missense_variant MODERATE 625C>T Arg209Cys
M0155646 NFNKCEKM_00060 54792 23 Gut 0.09 protein_coding synonymous_variant LOW 748T>C Leu250Leu
M0155647 NFNKCEKM_00060 54794 23 Gut 0.09 protein_coding synonymous_variant LOW 750A>G Leu250Leu
M0155648 NFNKCEKM_00060 54857 17 Gut 0.07 protein_coding synonymous_variant LOW 813C>T Ile271Ile
M0155649 NFNKCEKM_00060 54903 22 Gut 0.09 protein_coding synonymous_variant LOW 859C>T Leu287Leu
M0155650 NFNKCEKM_00060 54941 23 Gut 0.09 protein_coding synonymous_variant LOW 897C>G Gly299Gly
M0155651 NFNKCEKM_00060 55017 14 Gut 0.05 protein_coding missense_variant MODERATE 973G>A Val325Ile
M0155652 NFNKCEKM_00060 55037 23 Gut 0.09 protein_coding missense_variant MODERATE 993G>T Glu331Asp
M0155653 NFNKCEKM_00060 55081 17 Gut 0.07 protein_coding missense_variant MODERATE 1037A>G Gln346Arg
M0155654 NFNKCEKM_00056 55136 18 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -3630C>T None
M0155655 NFNKCEKM_00061 55451 16 Gut 0.06 protein_coding synonymous_variant LOW 189C>T Thr63Thr
M0155656 NFNKCEKM_00061 55505 18 Gut 0.07 protein_coding synonymous_variant LOW 243G>T Ala81Ala
M0155657 NFNKCEKM_00061 55553 17 Gut 0.07 protein_coding synonymous_variant LOW 291T>G Arg97Arg
M0155658 NFNKCEKM_00062 55677 16 Gut 0.06 protein_coding missense_variant MODERATE 117G>T Met39Ile
M0155659 NFNKCEKM_00062 55704 18 Gut 0.07 protein_coding synonymous_variant LOW 144G>A Leu48Leu
M0155660 NFNKCEKM_00062 55758 15 Gut 0.06 protein_coding synonymous_variant LOW 198G>A Pro66Pro
M0155661 NFNKCEKM_00062 55780 22 Gut 0.09 protein_coding missense_variant MODERATE 220T>C Tyr74His
M0155662 NFNKCEKM_00062 55854 16 Gut 0.06 protein_coding synonymous_variant LOW 294C>T Ile98Ile
M0155663 NFNKCEKM_00062 55941 15 Gut 0.06 protein_coding synonymous_variant LOW 381G>A Lys127Lys
M0155664 NFNKCEKM_00062 56277 15 Gut 0.06 protein_coding synonymous_variant LOW 717G>A Leu239Leu
M0155665 NFNKCEKM_00062 56340 14 Gut 0.05 protein_coding missense_variant MODERATE 780T>A Asp260Glu
M0155666 NFNKCEKM_00062 56412 18 Gut 0.07 protein_coding synonymous_variant LOW 852G>A Ser284Ser
M0155667 NFNKCEKM_00063 56656 11 Gut 0.04 protein_coding synonymous_variant LOW 120A>G Leu40Leu
M0155668 NFNKCEKM_00063 56674 11 Gut 0.04 protein_coding synonymous_variant LOW 138C>T Phe46Phe
M0155669 NFNKCEKM_00063 56821 11 Gut 0.04 protein_coding synonymous_variant LOW 285T>C Leu95Leu
M0155670 NFNKCEKM_00063 56854 12 Gut 0.05 protein_coding synonymous_variant LOW 318A>G Gln106Gln
M0155671 NFNKCEKM_00063 56885 10 Gut 0.04 protein_coding missense_variant MODERATE 349A>T Ile117Phe
M0155672 NFNKCEKM_00063 56893 11 Gut 0.04 protein_coding synonymous_variant LOW 357T>C Asp119Asp
M0155673 NFNKCEKM_00063 56917 11 Gut 0.04 protein_coding missense_variant MODERATE 381T>G Ile127Met
M0155674 NFNKCEKM_00063 56920 10 Gut 0.04 protein_coding synonymous_variant LOW 384A>G Lys128Lys
M0155675 NFNKCEKM_00064 56947 11 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -63A>G None
M0155676 NFNKCEKM_00064 56951 9 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -59T>C None
M0155677 NFNKCEKM_00053 48956 6 Gut 0.02 protein_coding synonymous_variant LOW 960C>T Ser320Ser
M0155678 NFNKCEKM_00053 48959 6 Gut 0.02 protein_coding synonymous_variant LOW 963C>T Tyr321Tyr
M0155679 NFNKCEKM_00053 48962 6 Gut 0.02 protein_coding synonymous_variant LOW 966A>G Ala322Ala
M0155680 NFNKCEKM_00053 48965 6 Gut 0.02 protein_coding synonymous_variant LOW 969T>C Val323Val
M0155681 NFNKCEKM_00053 48968 6 Gut 0.02 protein_coding synonymous_variant LOW 972C>A Ile324Ile
M0155682 NFNKCEKM_00053 48986 6 Gut 0.02 protein_coding synonymous_variant LOW 990A>G Thr330Thr
M0155683 NFNKCEKM_00053 48998 6 Gut 0.02 protein_coding synonymous_variant LOW 1002T>G Thr334Thr
M0155684 NFNKCEKM_00053 49001 7 Gut 0.03 protein_coding synonymous_variant LOW 1005C>T Val335Val
M0155685 NFNKCEKM_00053 49007 6 Gut 0.02 protein_coding synonymous_variant LOW 1011G>A Lys337Lys
M0155686 NFNKCEKM_00060 54548 3 Gut 0.01 protein_coding synonymous_variant LOW 504G>A Thr168Thr
M0155687 NFNKCEKM_00060 54557 3 Gut 0.01 protein_coding synonymous_variant LOW 513A>G Arg171Arg
M0155688 NFNKCEKM_00060 54989 5 Gut 0.02 protein_coding synonymous_variant LOW 945T>C Ile315Ile
M0155689 NFNKCEKM_00062 55766 5 Gut 0.02 protein_coding missense_variant MODERATE 206G>A Ser69Asn
M0155690 NFNKCEKM_00062 55833 5 Gut 0.02 protein_coding synonymous_variant LOW 273A>C Gly91Gly
M0155691 NFNKCEKM_00033 36679 14 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4304A>G None
M0155692 NFNKCEKM_00033 36734 16 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4359A>G None
M0155693 NFNKCEKM_00056 55238 7 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3732G>T None
M0155694 NFNKCEKM_00061 55281 4 Gut 0.02 protein_coding missense_variant MODERATE 19G>A Val7Ile
M0155695 NFNKCEKM_00061 55304 4 Gut 0.02 protein_coding synonymous_variant LOW 42G>A Gln14Gln
M0155696 NFNKCEKM_00061 55308 4 Gut 0.02 protein_coding missense_variant MODERATE 46T>C Tyr16His
M0155697 NFNKCEKM_00061 55418 4 Gut 0.02 protein_coding synonymous_variant LOW 156T>C Ile52Ile
M0155698 NFNKCEKM_00056 55197 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3691C>T None
M0155699 NFNKCEKM_00063 56548 5 Gut 0.02 protein_coding synonymous_variant LOW 12G>A Leu4Leu
M0155700 NFNKCEKM_00033 36571 15 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4196T>G None
M0155701 NFNKCEKM_00033 36636 10 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4261G>A None
M0155702 NFNKCEKM_00033 36652 10 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4277G>T None
M0155703 NFNKCEKM_00046 41515 4 Gut 0.02 protein_coding synonymous_variant LOW 1386T>C Asn462Asn
M0155704 NFNKCEKM_00046 41632 3 Gut 0.01 protein_coding synonymous_variant LOW 1269T>C Asp423Asp
M0155705 NFNKCEKM_00046 41700 5 Gut 0.02 protein_coding missense_variant MODERATE 1201A>G Ile401Val
M0155706 NFNKCEKM_00046 41703 5 Gut 0.02 protein_coding missense_variant MODERATE 1198G>A Glu400Lys
M0155707 NFNKCEKM_00046 41724 5 Gut 0.02 protein_coding missense_variant MODERATE 1177A>G Lys393Glu
M0155708 NFNKCEKM_00046 42655 3 Gut 0.01 protein_coding synonymous_variant LOW 246C>T Phe82Phe
M0155709 NFNKCEKM_00046 42661 3 Gut 0.01 protein_coding synonymous_variant LOW 240C>T Asp80Asp
M0155710 NFNKCEKM_00046 42685 3 Gut 0.01 protein_coding synonymous_variant LOW 216C>A Gly72Gly
M0155711 NFNKCEKM_00046 42736 3 Gut 0.01 protein_coding synonymous_variant LOW 165C>A Thr55Thr
M0155712 NFNKCEKM_00046 42753 3 Gut 0.01 protein_coding missense_variant MODERATE 148A>G Ser50Gly
M0155713 NFNKCEKM_00046 42871 3 Gut 0.01 protein_coding synonymous_variant LOW 30A>G Leu10Leu
M0155714 NFNKCEKM_00047 42941 3 Gut 0.01 protein_coding synonymous_variant LOW 267A>G Gly89Gly
M0155715 NFNKCEKM_00047 42959 3 Gut 0.01 protein_coding synonymous_variant LOW 249G>A Glu83Glu
M0155716 NFNKCEKM_00047 43131 3 Gut 0.01 protein_coding missense_variant MODERATE 77A>G His26Arg
M0155717 NFNKCEKM_00028 25748 6 Gut 0.02 protein_coding synonymous_variant LOW 132C>T Phe44Phe
M0155718 NFNKCEKM_00049 45263 3 Gut 0.01 protein_coding missense_variant MODERATE 1044G>C Glu348Asp
M0155719 NFNKCEKM_00049 45266 3 Gut 0.01 protein_coding synonymous_variant LOW 1041A>G Glu347Glu
M0155720 NFNKCEKM_00046 41505 4 Gut 0.02 protein_coding missense_variant MODERATE 1396A>G Lys466Glu
M0155721 NFNKCEKM_00046 41682 3 Gut 0.01 protein_coding missense_variant MODERATE 1219C>T His407Tyr
M0155722 NFNKCEKM_00046 41731 3 Gut 0.01 protein_coding synonymous_variant LOW 1170T>C Gly390Gly
M0155723 NFNKCEKM_00078 71013 3 Gut 0.01 protein_coding stop_lost&splice_region_variant HIGH 151T>C Ter51Glnext*?
M0155724 NFNKCEKM_00096 84423 4 Gut 0.02 protein_coding missense_variant MODERATE 58C>T Leu20Phe
M0155725 NFNKCEKM_00060 54837 3 Gut 0.01 protein_coding missense_variant MODERATE 793G>A Asp265Asn
M0155726 NFNKCEKM_00060 54910 3 Gut 0.01 protein_coding missense_variant MODERATE 866C>T Ala289Val
M0155727 NFNKCEKM_00060 54944 3 Gut 0.01 protein_coding synonymous_variant LOW 900C>T Tyr300Tyr
M0155728 NFNKCEKM_00060 54953 3 Gut 0.01 protein_coding synonymous_variant LOW 909T>C Ala303Ala
M0155729 NFNKCEKM_00060 54962 3 Gut 0.01 protein_coding synonymous_variant LOW 918A>G Leu306Leu
M0155730 NFNKCEKM_00060 54965 3 Gut 0.01 protein_coding synonymous_variant LOW 921C>T Leu307Leu
M0155731 NFNKCEKM_00060 54980 3 Gut 0.01 protein_coding synonymous_variant LOW 936C>T Asp312Asp
M0155732 NFNKCEKM_00060 55049 3 Gut 0.01 protein_coding synonymous_variant LOW 1005A>G Leu335Leu
M0155733 NFNKCEKM_00060 55093 4 Gut 0.02 protein_coding missense_variant MODERATE 1049T>C Leu350Ser
M0155734 NFNKCEKM_00060 55106 4 Gut 0.02 protein_coding synonymous_variant LOW 1062G>A Lys354Lys
M0155735 NFNKCEKM_00056 55126 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3620G>A None
M0155736 NFNKCEKM_00062 55584 3 Gut 0.01 protein_coding synonymous_variant LOW 24G>A Gly8Gly
M0155737 NFNKCEKM_00062 55599 3 Gut 0.01 protein_coding synonymous_variant LOW 39C>T Gly13Gly
M0155738 NFNKCEKM_00062 55812 3 Gut 0.01 protein_coding synonymous_variant LOW 252C>T His84His
M0155739 NFNKCEKM_00062 55818 3 Gut 0.01 protein_coding synonymous_variant LOW 258C>T Tyr86Tyr
M0155740 NFNKCEKM_00062 55824 3 Gut 0.01 protein_coding synonymous_variant LOW 264A>G Lys88Lys
M0155741 NFNKCEKM_00062 55825 3 Gut 0.01 protein_coding synonymous_variant LOW 265C>T Leu89Leu
M0155742 NFNKCEKM_00062 55919 3 Gut 0.01 protein_coding missense_variant MODERATE 359A>G Asp120Gly
M0155743 NFNKCEKM_00062 55955 3 Gut 0.01 protein_coding missense_variant MODERATE 395G>A Arg132Lys
M0155744 NFNKCEKM_00062 56062 3 Gut 0.01 protein_coding missense_variant MODERATE 502C>T His168Tyr
M0155745 NFNKCEKM_00062 56115 3 Gut 0.01 protein_coding synonymous_variant LOW 555T>A Ala185Ala
M0155746 NFNKCEKM_00062 56229 3 Gut 0.01 protein_coding synonymous_variant LOW 669C>T Gly223Gly
M0155747 NFNKCEKM_00062 56403 4 Gut 0.02 protein_coding synonymous_variant LOW 843C>T Asn281Asn
M0155748 NFNKCEKM_00057 56520 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4768G>A None
M0155749 NFNKCEKM_00095 83700 3 Gut 0.01 protein_coding missense_variant MODERATE 961A>G Ile321Val
M0155750 NFNKCEKM_00095 83780 4 Gut 0.02 protein_coding synonymous_variant LOW 1041G>A Lys347Lys
M0155751 NFNKCEKM_00093 86236 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4503C>T None
M0155752 NFNKCEKM_00100 86528 3 Gut 0.01 protein_coding missense_variant MODERATE 137A>T Gln46Leu
M0155753 NFNKCEKM_00073 66403 3 Gut 0.01 protein_coding synonymous_variant LOW 60C>T Asp20Asp
M0155754 NFNKCEKM_00074 67006 3 Gut 0.01 protein_coding synonymous_variant LOW 228A>G Lys76Lys
M0155755 NFNKCEKM_00074 67048 3 Gut 0.01 protein_coding synonymous_variant LOW 186G>C Pro62Pro
M0155756 NFNKCEKM_00074 67179 3 Gut 0.01 protein_coding missense_variant MODERATE 55A>G Thr19Ala
M0155757 NFNKCEKM_00074 67219 3 Gut 0.01 protein_coding synonymous_variant LOW 15T>C Asn5Asn
M0155758 NFNKCEKM_00077 70987 3 Gut 0.01 protein_coding missense_variant MODERATE 1037T>A Val346Glu
M0155759 NFNKCEKM_00119 100396 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -2058G>A None
M0155760 NFNKCEKM_00119 100423 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -2085G>A None
M0155761 NFNKCEKM_00119 100425 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -2087A>G None
M0155762 NFNKCEKM_00046 41509 3 Gut 0.01 protein_coding synonymous_variant LOW 1392T>C Ile464Ile
M0155763 NFNKCEKM_00046 41514 3 Gut 0.01 protein_coding missense_variant MODERATE 1387A>G Thr463Ala
M0155764 NFNKCEKM_00127 103580 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -181T>C None
M0155765 NFNKCEKM_00127 103607 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -154T>C None
M0155766 NFNKCEKM_00127 103609 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -152C>T None
M0155767 NFNKCEKM_00056 55185 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3679G>A None
M0155768 NFNKCEKM_00098 85549 3 Gut 0.01 protein_coding missense_variant MODERATE 125G>A Arg42Gln
M0155769 NFNKCEKM_00098 85648 3 Gut 0.01 protein_coding missense_variant MODERATE 224A>G Tyr75Cys
M0155770 NFNKCEKM_00105 89533 3 Gut 0.01 protein_coding missense_variant MODERATE 119T>C Ile40Thr
M0155771 NFNKCEKM_00101 92236 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4737G>A None
M0155772 NFNKCEKM_00101 92240 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4741C>A None
M0155773 NFNKCEKM_00101 92372 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4873T>A None
M0155774 NFNKCEKM_00101 92396 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4897C>T None
M0155775 NFNKCEKM_00101 92408 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4909G>A None
M0155776 NFNKCEKM_00109 95180 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3889T>C None
M0155777 NFNKCEKM_00109 95383 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4092C>T None
M0155778 NFNKCEKM_00109 95386 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4095A>G None
M0155779 NFNKCEKM_00109 95395 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4104A>T None
M0155780 NFNKCEKM_00109 95396 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4105A>C None
M0155781 NFNKCEKM_00072 66072 3 Gut 0.01 protein_coding synonymous_variant LOW 564A>G Lys188Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
NFNKCEKM_00030 PHI:3281 AS87_04050 71.4 3e-136 1 325 1.0000 1.0000 birds fibrinous serositis; caseous salpingitis; vegetative disorder lipopolysaccharide biosynthesis and pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NFNKCEKM_00018 QUT64421.1|GT4 100 1.11e-279 1 378 1 1
NFNKCEKM_00020 QUT55894.1|GT2 100 1.57e-228 1 304 1 1
NFNKCEKM_00022 QRP91616.1|GT4 100 5.41e-274 1 366 1 1
NFNKCEKM_00023 BBK89584.1|GT2 100 6.37e-226 1 300 1 1
NFNKCEKM_00024 QRP91614.1|GT4 100 4.79e-292 1 391 1 1
NFNKCEKM_00025 QUT83193.1|GT4 100 0 1 444 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term