Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C364
  Reference Plasmid   NZ_AP019857.1
  Reference Plasmid Size   102846
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0155783 NFNKEPKH_00007 4321 3 Gut 0.50 protein_coding synonymous_variant LOW 45G>A Leu15Leu
M0155784 NFNKEPKH_00007 4333 3 Gut 0.50 protein_coding missense_variant MODERATE 57T>G Asp19Glu
M0155785 NFNKEPKH_00007 4342 3 Gut 0.50 protein_coding synonymous_variant LOW 66G>A Lys22Lys
M0155786 NFNKEPKH_00007 4359 3 Gut 0.50 protein_coding missense_variant MODERATE 83T>G Phe28Cys
M0155787 NFNKEPKH_00007 4378 3 Gut 0.50 protein_coding synonymous_variant LOW 102C>T Tyr34Tyr
M0155788 NFNKEPKH_00007 4384 3 Gut 0.50 protein_coding synonymous_variant LOW 108T>C Asn36Asn
M0155789 NFNKEPKH_00007 4390 3 Gut 0.50 protein_coding missense_variant MODERATE 114T>G Asn38Lys
M0155790 NFNKEPKH_00007 4403 3 Gut 0.50 protein_coding missense_variant MODERATE 127A>G Lys43Glu
M0155791 NFNKEPKH_00007 4447 3 Gut 0.50 protein_coding missense_variant MODERATE 171G>T Glu57Asp
M0155792 NFNKEPKH_00007 4456 3 Gut 0.50 protein_coding missense_variant MODERATE 180G>A Met60Ile
M0155793 NFNKEPKH_00007 4459 3 Gut 0.50 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0155794 NFNKEPKH_00007 4490 3 Gut 0.50 protein_coding missense_variant MODERATE 214A>G Lys72Glu
M0155795 NFNKEPKH_00007 4535 3 Gut 0.50 protein_coding missense_variant MODERATE 259G>A Glu87Lys
M0155796 NFNKEPKH_00007 4542 3 Gut 0.50 protein_coding missense_variant MODERATE 266A>G Asp89Gly
M0155797 NFNKEPKH_00007 4543 3 Gut 0.50 protein_coding synonymous_variant LOW 267T>C Asp89Asp
M0155798 NFNKEPKH_00007 4546 3 Gut 0.50 protein_coding missense_variant MODERATE 270C>G Ile90Met
M0155799 NFNKEPKH_00007 4547 3 Gut 0.50 protein_coding missense_variant MODERATE 271T>C Ser91Pro
M0155800 NFNKEPKH_00007 4548 3 Gut 0.50 protein_coding missense_variant MODERATE 272C>T Ser91Leu
M0155801 NFNKEPKH_00007 4613 3 Gut 0.50 protein_coding missense_variant MODERATE 337G>C Gly113Arg
M0155802 NFNKEPKH_00007 4615 3 Gut 0.50 protein_coding synonymous_variant LOW 339G>T Gly113Gly
M0155803 NFNKEPKH_00007 4633 3 Gut 0.50 protein_coding missense_variant MODERATE 357G>T Glu119Asp
M0155804 NFNKEPKH_00007 4644 3 Gut 0.50 protein_coding missense_variant MODERATE 368C>T Ala123Val
M0155805 NFNKEPKH_00007 4647 3 Gut 0.50 protein_coding missense_variant MODERATE 371T>C Leu124Ser
M0155806 NFNKEPKH_00007 4726 3 Gut 0.50 protein_coding synonymous_variant LOW 450C>T His150His
M0155807 NFNKEPKH_00007 4739 3 Gut 0.50 protein_coding missense_variant MODERATE 463G>A Val155Met
M0155808 NFNKEPKH_00007 4742 3 Gut 0.50 protein_coding missense_variant MODERATE 466C>G Leu156Val
M0155809 NFNKEPKH_00007 4748 3 Gut 0.50 protein_coding missense_variant MODERATE 472G>A Val158Ile
M0155810 NFNKEPKH_00007 4781 3 Gut 0.50 protein_coding missense_variant MODERATE 505G>T Val169Leu
M0155811 NFNKEPKH_00007 4798 3 Gut 0.50 protein_coding synonymous_variant LOW 522C>T Ile174Ile
M0155812 NFNKEPKH_00007 4799 3 Gut 0.50 protein_coding missense_variant MODERATE 523T>C Ser175Pro
M0155813 NFNKEPKH_00007 4829 3 Gut 0.50 protein_coding missense_variant MODERATE 553T>C Ser185Pro
M0155814 NFNKEPKH_00007 4840 3 Gut 0.50 protein_coding missense_variant MODERATE 564G>A Met188Ile
M0155815 NFNKEPKH_00007 4849 3 Gut 0.50 protein_coding synonymous_variant LOW 573G>A Thr191Thr
M0155816 NFNKEPKH_00007 4854 3 Gut 0.50 protein_coding missense_variant MODERATE 578A>G Asp193Gly
M0155817 NFNKEPKH_00007 4861 3 Gut 0.50 protein_coding synonymous_variant LOW 585T>A Pro195Pro
M0155818 NFNKEPKH_00007 4862 3 Gut 0.50 protein_coding missense_variant MODERATE 586G>T Ala196Ser
M0155819 NFNKEPKH_00007 4873 3 Gut 0.50 protein_coding synonymous_variant LOW 597G>A Glu199Glu
M0155820 NFNKEPKH_00007 4945 3 Gut 0.50 protein_coding synonymous_variant LOW 669C>T Ile223Ile
M0155821 NFNKEPKH_00007 5072 3 Gut 0.50 protein_coding missense_variant MODERATE 796A>G Asn266Asp
M0155822 NFNKEPKH_00007 5073 3 Gut 0.50 protein_coding missense_variant MODERATE 797A>G Asn266Ser
M0155823 NFNKEPKH_00007 5080 3 Gut 0.50 protein_coding missense_variant MODERATE 804G>C Gln268His
M0155824 NFNKEPKH_00007 5181 3 Gut 0.50 protein_coding missense_variant MODERATE 905A>C Asn302Thr
M0155825 NFNKEPKH_00007 5203 3 Gut 0.50 protein_coding synonymous_variant LOW 927T>C Ser309Ser
M0155826 NFNKEPKH_00007 5229 3 Gut 0.50 protein_coding missense_variant MODERATE 953G>A Ser318Asn
M0155827 NFNKEPKH_00007 5302 3 Gut 0.50 protein_coding synonymous_variant LOW 1026C>T Phe342Phe
M0155828 NFNKEPKH_00008 5379 3 Gut 0.50 protein_coding missense_variant MODERATE 23T>C Leu8Pro
M0155829 NFNKEPKH_00008 5439 3 Gut 0.50 protein_coding missense_variant MODERATE 83A>T Tyr28Phe
M0155830 NFNKEPKH_00008 5485 3 Gut 0.50 protein_coding synonymous_variant LOW 129G>A Val43Val
M0155831 NFNKEPKH_00008 5569 3 Gut 0.50 protein_coding synonymous_variant LOW 213C>T Asn71Asn
M0155832 NFNKEPKH_00008 5656 3 Gut 0.50 protein_coding synonymous_variant LOW 300C>T Arg100Arg
M0155833 NFNKEPKH_00008 5657 3 Gut 0.50 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0155834 NFNKEPKH_00008 5680 3 Gut 0.50 protein_coding synonymous_variant LOW 324T>C His108His
M0155835 NFNKEPKH_00008 5698 3 Gut 0.50 protein_coding synonymous_variant LOW 342A>T Gly114Gly
M0155836 NFNKEPKH_00011 7423 3 Gut 0.50 protein_coding missense_variant MODERATE 544C>A Leu182Ile
M0155837 NFNKEPKH_00011 7424 3 Gut 0.50 protein_coding missense_variant MODERATE 545T>G Leu182Arg
M0155838 NFNKEPKH_00011 7428 3 Gut 0.50 protein_coding synonymous_variant LOW 549C>T Asn183Asn
M0155839 NFNKEPKH_00011 7433 3 Gut 0.50 protein_coding missense_variant MODERATE 554C>A Thr185Asn
M0155840 NFNKEPKH_00011 7452 3 Gut 0.50 protein_coding synonymous_variant LOW 573A>G Ser191Ser
M0155841 NFNKEPKH_00011 7458 3 Gut 0.50 protein_coding synonymous_variant LOW 579C>T Tyr193Tyr
M0155842 NFNKEPKH_00011 7482 3 Gut 0.50 protein_coding synonymous_variant LOW 603T>C Ala201Ala
M0155843 NFNKEPKH_00011 7539 3 Gut 0.50 protein_coding synonymous_variant LOW 660T>C Gly220Gly
M0155844 NFNKEPKH_00011 7553 3 Gut 0.50 protein_coding missense_variant MODERATE 674G>T Arg225Met
M0155845 NFNKEPKH_00011 7590 3 Gut 0.50 protein_coding synonymous_variant LOW 711A>T Ser237Ser
M0155846 NFNKEPKH_00011 7609 3 Gut 0.50 protein_coding missense_variant MODERATE 730G>A Gly244Ser
M0155847 NFNKEPKH_00011 7638 3 Gut 0.50 protein_coding synonymous_variant LOW 759A>T Gly253Gly
M0155848 NFNKEPKH_00011 7653 3 Gut 0.50 protein_coding synonymous_variant LOW 774C>T Ile258Ile
M0155849 NFNKEPKH_00011 7698 3 Gut 0.50 protein_coding synonymous_variant LOW 819T>A Gly273Gly
M0155850 NFNKEPKH_00011 7848 3 Gut 0.50 protein_coding synonymous_variant LOW 969C>T Ser323Ser
M0155851 NFNKEPKH_00011 8255 3 Gut 0.50 protein_coding missense_variant MODERATE 1376G>T Gly459Val
M0155852 NFNKEPKH_00011 8262 3 Gut 0.50 protein_coding synonymous_variant LOW 1383G>A Arg461Arg
M0155853 NFNKEPKH_00011 8301 3 Gut 0.50 protein_coding synonymous_variant LOW 1422C>T Ala474Ala
M0155854 NFNKEPKH_00011 8340 3 Gut 0.50 protein_coding synonymous_variant LOW 1461A>C Thr487Thr
M0155855 NFNKEPKH_00011 8391 3 Gut 0.50 protein_coding synonymous_variant LOW 1512G>A Leu504Leu
M0155856 NFNKEPKH_00011 8394 3 Gut 0.50 protein_coding synonymous_variant LOW 1515C>T Asn505Asn
M0155857 NFNKEPKH_00012 8513 3 Gut 0.50 protein_coding missense_variant MODERATE 46G>A Val16Ile
M0155858 NFNKEPKH_00012 8539 3 Gut 0.50 protein_coding synonymous_variant LOW 72A>G Val24Val
M0155859 NFNKEPKH_00012 8586 3 Gut 0.50 protein_coding missense_variant MODERATE 119C>A Ala40Glu
M0155860 NFNKEPKH_00012 8607 3 Gut 0.50 protein_coding missense_variant MODERATE 140A>G Gln47Arg
M0155861 NFNKEPKH_00012 8609 3 Gut 0.50 protein_coding missense_variant MODERATE 142G>T Ala48Ser
M0155862 NFNKEPKH_00012 8632 3 Gut 0.50 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0155863 NFNKEPKH_00012 8711 3 Gut 0.50 protein_coding synonymous_variant LOW 244T>C Leu82Leu
M0155864 NFNKEPKH_00012 8803 3 Gut 0.50 protein_coding synonymous_variant LOW 336T>C Asp112Asp
M0155865 NFNKEPKH_00013 8926 3 Gut 0.50 protein_coding missense_variant MODERATE 28G>T Val10Phe
M0155866 NFNKEPKH_00013 8976 3 Gut 0.50 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0155867 NFNKEPKH_00013 9000 3 Gut 0.50 protein_coding synonymous_variant LOW 102T>C Val34Val
M0155868 NFNKEPKH_00013 9012 3 Gut 0.50 protein_coding synonymous_variant LOW 114A>G Glu38Glu
M0155869 NFNKEPKH_00013 9192 3 Gut 0.50 protein_coding synonymous_variant LOW 294T>C Tyr98Tyr
M0155870 NFNKEPKH_00013 9231 3 Gut 0.50 protein_coding missense_variant MODERATE 333G>T Glu111Asp
M0155871 NFNKEPKH_00013 9235 3 Gut 0.50 protein_coding missense_variant MODERATE 337G>A Val113Ile
M0155872 NFNKEPKH_00013 9246 3 Gut 0.50 protein_coding synonymous_variant LOW 348T>C Phe116Phe
M0155873 NFNKEPKH_00013 9256 3 Gut 0.50 protein_coding missense_variant MODERATE 358C>A His120Asn
M0155874 NFNKEPKH_00013 9642 3 Gut 0.50 protein_coding synonymous_variant LOW 744C>T Asn248Asn
M0155875 NFNKEPKH_00013 9820 3 Gut 0.50 protein_coding missense_variant MODERATE 922A>C Asn308His
M0155876 NFNKEPKH_00013 9822 3 Gut 0.50 protein_coding missense_variant MODERATE 924T>A Asn308Lys
M0155877 NFNKEPKH_00013 10089 3 Gut 0.50 protein_coding synonymous_variant LOW 1191G>T Val397Val
M0155878 NFNKEPKH_00013 10125 3 Gut 0.50 protein_coding synonymous_variant LOW 1227T>A Ile409Ile
M0155879 NFNKEPKH_00013 10167 3 Gut 0.50 protein_coding synonymous_variant LOW 1269T>A Thr423Thr
M0155880 NFNKEPKH_00013 10218 3 Gut 0.50 protein_coding synonymous_variant LOW 1320A>T Ala440Ala
M0155881 NFNKEPKH_00013 10293 3 Gut 0.50 protein_coding synonymous_variant LOW 1395C>T Ser465Ser
M0155882 NFNKEPKH_00014 10468 3 Gut 0.50 protein_coding synonymous_variant LOW 111A>G Arg37Arg
M0155883 NFNKEPKH_00014 10474 3 Gut 0.50 protein_coding missense_variant MODERATE 117A>G Ile39Met
M0155884 NFNKEPKH_00014 10480 3 Gut 0.50 protein_coding synonymous_variant LOW 123A>G Arg41Arg
M0155885 NFNKEPKH_00014 10580 3 Gut 0.50 protein_coding synonymous_variant LOW 223A>C Arg75Arg
M0155886 NFNKEPKH_00014 10624 3 Gut 0.50 protein_coding synonymous_variant LOW 267A>G Glu89Glu
M0155887 NFNKEPKH_00014 10660 3 Gut 0.50 protein_coding synonymous_variant LOW 303A>G Glu101Glu
M0155888 NFNKEPKH_00014 10694 3 Gut 0.50 protein_coding missense_variant MODERATE 337A>G Thr113Ala
M0155889 NFNKEPKH_00014 10708 3 Gut 0.50 protein_coding synonymous_variant LOW 351G>A Arg117Arg
M0155890 NFNKEPKH_00014 10732 3 Gut 0.50 protein_coding synonymous_variant LOW 375G>A Gly125Gly
M0155891 NFNKEPKH_00014 10748 3 Gut 0.50 protein_coding missense_variant MODERATE 391C>A Gln131Lys
M0155892 NFNKEPKH_00014 10783 3 Gut 0.50 protein_coding synonymous_variant LOW 426G>A Glu142Glu
M0155893 NFNKEPKH_00014 10815 3 Gut 0.50 protein_coding missense_variant MODERATE 458A>T Lys153Ile
M0155894 NFNKEPKH_00014 10867 3 Gut 0.50 protein_coding synonymous_variant LOW 510T>A Val170Val
M0155895 NFNKEPKH_00015 10925 3 Gut 0.50 protein_coding missense_variant MODERATE 6T>A Asn2Lys
M0155896 NFNKEPKH_00015 11024 3 Gut 0.50 protein_coding synonymous_variant LOW 105G>T Ala35Ala
M0155897 NFNKEPKH_00015 11069 3 Gut 0.50 protein_coding synonymous_variant LOW 150A>G Glu50Glu
M0155898 NFNKEPKH_00015 11142 3 Gut 0.50 protein_coding synonymous_variant LOW 223T>C Leu75Leu
M0155899 NFNKEPKH_00015 11173 3 Gut 0.50 protein_coding missense_variant MODERATE 254C>A Ala85Asp
M0155900 NFNKEPKH_00015 11189 3 Gut 0.50 protein_coding synonymous_variant LOW 270C>T Ile90Ile
M0155901 NFNKEPKH_00015 11216 3 Gut 0.50 protein_coding synonymous_variant LOW 297A>C Leu99Leu
M0155902 NFNKEPKH_00015 11224 3 Gut 0.50 protein_coding missense_variant MODERATE 305T>A Phe102Tyr
M0155903 NFNKEPKH_00015 11234 3 Gut 0.50 protein_coding synonymous_variant LOW 315C>T Asp105Asp
M0155904 NFNKEPKH_00015 11285 3 Gut 0.50 protein_coding missense_variant MODERATE 366T>A Asp122Glu
M0155905 NFNKEPKH_00015 11388 3 Gut 0.50 protein_coding missense_variant MODERATE 469G>A Asp157Asn
M0155906 NFNKEPKH_00015 11402 3 Gut 0.50 protein_coding synonymous_variant LOW 483T>C Phe161Phe
M0155907 NFNKEPKH_00015 11405 3 Gut 0.50 protein_coding missense_variant MODERATE 486A>T Leu162Phe
M0155908 NFNKEPKH_00015 11413 3 Gut 0.50 protein_coding missense_variant MODERATE 494T>A Phe165Tyr
M0155909 NFNKEPKH_00015 11424 3 Gut 0.50 protein_coding missense_variant MODERATE 505C>G Gln169Glu
M0155910 NFNKEPKH_00015 11567 3 Gut 0.50 protein_coding synonymous_variant LOW 648G>A Glu216Glu
M0155911 NFNKEPKH_00016 11783 3 Gut 0.50 protein_coding missense_variant MODERATE 49A>G Thr17Ala
M0155912 NFNKEPKH_00016 11791 3 Gut 0.50 protein_coding synonymous_variant LOW 57G>T Val19Val
M0155913 NFNKEPKH_00016 11797 3 Gut 0.50 protein_coding synonymous_variant LOW 63A>C Gly21Gly
M0155914 NFNKEPKH_00016 11806 3 Gut 0.50 protein_coding synonymous_variant LOW 72G>A Leu24Leu
M0155915 NFNKEPKH_00016 12026 3 Gut 0.50 protein_coding missense_variant MODERATE 292T>A Ser98Thr
M0155916 NFNKEPKH_00017 12243 4 Gut 0.67 protein_coding synonymous_variant LOW 24A>G Glu8Glu
M0155917 NFNKEPKH_00017 12244 3 Gut 0.50 protein_coding synonymous_variant LOW 25C>T Leu9Leu
M0155918 NFNKEPKH_00017 12252 4 Gut 0.67 protein_coding synonymous_variant LOW 33T>C Ser11Ser
M0155919 NFNKEPKH_00017 12289 4 Gut 0.67 protein_coding missense_variant MODERATE 70A>G Ile24Val
M0155920 NFNKEPKH_00017 12294 4 Gut 0.67 protein_coding synonymous_variant LOW 75G>A Glu25Glu
M0155921 NFNKEPKH_00017 12325 4 Gut 0.67 protein_coding synonymous_variant LOW 106C>A Arg36Arg
M0155922 NFNKEPKH_00017 12371 3 Gut 0.50 protein_coding missense_variant MODERATE 152A>G Lys51Arg
M0155923 NFNKEPKH_00017 12379 4 Gut 0.67 protein_coding missense_variant MODERATE 160C>G Leu54Val
M0155924 NFNKEPKH_00017 12384 4 Gut 0.67 protein_coding synonymous_variant LOW 165T>C Asp55Asp
M0155925 NFNKEPKH_00017 12404 3 Gut 0.50 protein_coding missense_variant MODERATE 185T>C Ile62Thr
M0155926 NFNKEPKH_00017 12431 3 Gut 0.50 protein_coding missense_variant MODERATE 212C>T Ala71Val
M0155927 NFNKEPKH_00017 12447 3 Gut 0.50 protein_coding missense_variant MODERATE 228G>T Glu76Asp
M0155928 NFNKEPKH_00017 12471 4 Gut 0.67 protein_coding synonymous_variant LOW 252C>T Asp84Asp
M0155929 NFNKEPKH_00017 12483 4 Gut 0.67 protein_coding synonymous_variant LOW 264G>A Glu88Glu
M0155930 NFNKEPKH_00017 12591 4 Gut 0.67 protein_coding synonymous_variant LOW 372A>G Gly124Gly
M0155931 NFNKEPKH_00017 12603 4 Gut 0.67 protein_coding synonymous_variant LOW 384T>C Ala128Ala
M0155932 NFNKEPKH_00017 12639 3 Gut 0.50 protein_coding synonymous_variant LOW 420T>A Leu140Leu
M0155933 NFNKEPKH_00017 12828 4 Gut 0.67 protein_coding synonymous_variant LOW 609T>C Cys203Cys
M0155934 NFNKEPKH_00017 12858 4 Gut 0.67 protein_coding synonymous_variant LOW 639A>C Ser213Ser
M0155935 NFNKEPKH_00017 12867 4 Gut 0.67 protein_coding synonymous_variant LOW 648T>C Ser216Ser
M0155936 NFNKEPKH_00017 13332 4 Gut 0.67 protein_coding synonymous_variant LOW 1113A>G Leu371Leu
M0155937 NFNKEPKH_00017 13431 4 Gut 0.67 protein_coding synonymous_variant LOW 1212C>A Arg404Arg
M0155938 NFNKEPKH_00017 13473 4 Gut 0.67 protein_coding missense_variant MODERATE 1254T>A Ser418Arg
M0155939 NFNKEPKH_00017 13608 4 Gut 0.67 protein_coding synonymous_variant LOW 1389T>A Ser463Ser
M0155940 NFNKEPKH_00017 13638 3 Gut 0.50 protein_coding synonymous_variant LOW 1419A>G Lys473Lys
M0155941 NFNKEPKH_00017 13668 3 Gut 0.50 protein_coding missense_variant MODERATE 1449G>T Lys483Asn
M0155942 NFNKEPKH_00018 13828 4 Gut 0.67 protein_coding synonymous_variant LOW 93A>G Val31Val
M0155943 NFNKEPKH_00018 13837 4 Gut 0.67 protein_coding synonymous_variant LOW 102T>C Arg34Arg
M0155944 NFNKEPKH_00018 14191 3 Gut 0.50 protein_coding synonymous_variant LOW 456C>T Ser152Ser
M0155945 NFNKEPKH_00018 14251 3 Gut 0.50 protein_coding missense_variant MODERATE 516T>G Phe172Leu
M0155946 NFNKEPKH_00018 14398 4 Gut 0.67 protein_coding synonymous_variant LOW 663A>G Lys221Lys
M0155947 NFNKEPKH_00018 14414 4 Gut 0.67 protein_coding missense_variant MODERATE 679A>G Thr227Ala
M0155948 NFNKEPKH_00018 14428 4 Gut 0.67 protein_coding synonymous_variant LOW 693C>T Ile231Ile
M0155949 NFNKEPKH_00018 14437 3 Gut 0.50 protein_coding synonymous_variant LOW 702A>G Glu234Glu
M0155950 NFNKEPKH_00018 14451 4 Gut 0.67 protein_coding missense_variant MODERATE 716G>A Arg239Lys
M0155951 NFNKEPKH_00018 14584 4 Gut 0.67 protein_coding synonymous_variant LOW 849C>T Ser283Ser
M0155952 NFNKEPKH_00018 14626 3 Gut 0.50 protein_coding synonymous_variant LOW 891T>C Asn297Asn
M0155953 NFNKEPKH_00018 14659 4 Gut 0.67 protein_coding synonymous_variant LOW 924C>T Gly308Gly
M0155954 NFNKEPKH_00019 14834 4 Gut 0.67 protein_coding synonymous_variant LOW 60T>G Gly20Gly
M0155955 NFNKEPKH_00019 14843 4 Gut 0.67 protein_coding synonymous_variant LOW 69G>A Ser23Ser
M0155956 NFNKEPKH_00019 14933 3 Gut 0.50 protein_coding synonymous_variant LOW 159C>T Thr53Thr
M0155957 NFNKEPKH_00019 14969 3 Gut 0.50 protein_coding synonymous_variant LOW 195A>G Arg65Arg
M0155958 NFNKEPKH_00019 15024 3 Gut 0.50 protein_coding missense_variant MODERATE 250A>C Ile84Leu
M0155959 NFNKEPKH_00019 15025 3 Gut 0.50 protein_coding missense_variant MODERATE 251T>A Ile84Lys
M0155960 NFNKEPKH_00019 15171 3 Gut 0.50 protein_coding missense_variant MODERATE 397A>G Ile133Val
M0155961 NFNKEPKH_00019 15183 3 Gut 0.50 protein_coding missense_variant MODERATE 409A>T Asn137Tyr
M0155962 NFNKEPKH_00019 15267 3 Gut 0.50 protein_coding missense_variant MODERATE 493A>G Thr165Ala
M0155963 NFNKEPKH_00019 15426 3 Gut 0.50 protein_coding synonymous_variant LOW 652A>C Arg218Arg
M0155964 NFNKEPKH_00019 15428 3 Gut 0.50 protein_coding missense_variant MODERATE 654A>C Arg218Ser
M0155965 NFNKEPKH_00019 15433 3 Gut 0.50 protein_coding missense_variant MODERATE 659C>A Thr220Asn
M0155966 NFNKEPKH_00019 15435 3 Gut 0.50 protein_coding missense_variant MODERATE 661A>T Thr221Ser
M0155967 NFNKEPKH_00019 15441 3 Gut 0.50 protein_coding missense_variant MODERATE 667T>A Ser223Thr
M0155968 NFNKEPKH_00019 15574 3 Gut 0.50 protein_coding missense_variant MODERATE 800C>G Ala267Gly
M0155969 NFNKEPKH_00019 15641 3 Gut 0.50 protein_coding synonymous_variant LOW 867A>G Thr289Thr
M0155970 NFNKEPKH_00019 15652 3 Gut 0.50 protein_coding missense_variant MODERATE 878G>A Arg293Gln
M0155971 NFNKEPKH_00019 15847 3 Gut 0.50 protein_coding splice_region_variant&stop_retained_variant LOW 1073G>A Ter358Ter
M0155972 NFNKEPKH_00020 16039 3 Gut 0.50 protein_coding synonymous_variant LOW 186C>T Asn62Asn
M0155973 NFNKEPKH_00020 16156 3 Gut 0.50 protein_coding synonymous_variant LOW 303T>C Gly101Gly
M0155974 NFNKEPKH_00020 16192 3 Gut 0.50 protein_coding synonymous_variant LOW 339A>T Ile113Ile
M0155975 NFNKEPKH_00020 16204 3 Gut 0.50 protein_coding synonymous_variant LOW 351T>C Ser117Ser
M0155976 NFNKEPKH_00020 16267 3 Gut 0.50 protein_coding synonymous_variant LOW 414G>A Leu138Leu
M0155977 NFNKEPKH_00020 16496 3 Gut 0.50 protein_coding missense_variant MODERATE 643G>A Val215Ile
M0155978 NFNKEPKH_00020 16630 3 Gut 0.50 protein_coding synonymous_variant LOW 777G>A Gly259Gly
M0155979 NFNKEPKH_00022 16717 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -699C>T None
M0155980 NFNKEPKH_00022 16746 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -670T>C None
M0155981 NFNKEPKH_00022 16785 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -631G>T None
M0155982 NFNKEPKH_00022 16948 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -468A>G None
M0155983 NFNKEPKH_00021 17013 3 Gut 0.50 protein_coding synonymous_variant LOW 201A>G Gly67Gly
M0155984 NFNKEPKH_00021 17036 3 Gut 0.50 protein_coding missense_variant MODERATE 178G>A Ala60Thr
M0155985 NFNKEPKH_00021 17039 3 Gut 0.50 protein_coding missense_variant MODERATE 175A>C Ile59Leu
M0155986 NFNKEPKH_00021 17141 3 Gut 0.50 protein_coding missense_variant MODERATE 73A>C Asn25His
M0155987 NFNKEPKH_00021 17166 3 Gut 0.50 protein_coding missense_variant MODERATE 48A>T Leu16Phe
M0155988 NFNKEPKH_00021 17323 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -110T>C None
M0155989 NFNKEPKH_00021 17332 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -119C>T None
M0155990 NFNKEPKH_00021 17367 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -154T>C None
M0155991 NFNKEPKH_00021 17378 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -165T>G None
M0155992 NFNKEPKH_00021 17382 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -169T>C None
M0155993 NFNKEPKH_00021 17390 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -177A>G None
M0155994 NFNKEPKH_00021 17392 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -179G>A None
M0155995 NFNKEPKH_00022 17491 3 Gut 0.50 protein_coding stop_gained HIGH 76C>T Arg26*
M0155996 NFNKEPKH_00022 17541 3 Gut 0.50 protein_coding synonymous_variant LOW 126T>C Ala42Ala
M0155997 NFNKEPKH_00082 65637 3 Gut 0.50 protein_coding missense_variant MODERATE 853A>C Lys285Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
NFNKEPKH_00079 VFG000839 Paa 74.3 1.1e-110 1 249 1.0 0.9881 Adherence outer membrane adhesin Paa experiment
NFNKEPKH_00006 VFG042770 Adhesive fimbriae 96 2e-51 1 100 1.0 1 Adherence CofR prediction
NFNKEPKH_00007 VFG042771 Adhesive fimbriae 94.7 7.1e-152 73 355 0.7972 1 Adherence CofS prediction
NFNKEPKH_00008 VFG042772 Adhesive fimbriae 99.3 3.9e-80 1 147 1.0 1 Adherence CofT prediction
NFNKEPKH_00010 VFG001436 Adhesive fimbriae 82.8 1.1e-100 1 236 1.0 0.9916 Adherence CFA/III pilin prediction
NFNKEPKH_00011 VFG042774 Adhesive fimbriae 94.5 1.4e-284 1 523 1.0 1 Adherence CofB prediction
NFNKEPKH_00012 VFG042775 Adhesive fimbriae 98.5 9.1e-71 1 137 1.0 1 Adherence CofC prediction
NFNKEPKH_00013 VFG042776 Adhesive fimbriae 99.6 1.5e-269 1 485 1.0 1 Adherence CofD prediction
NFNKEPKH_00014 VFG042777 Adhesive fimbriae 97.8 6.7e-101 1 186 1.0 1 Adherence CofE prediction
NFNKEPKH_00015 VFG042778 Adhesive fimbriae 97.1 1.1e-147 1 275 1.0 1 Adherence CofF prediction
NFNKEPKH_00016 VFG042779 Adhesive fimbriae 99.4 1e-81 1 161 1.0 1 Adherence CofG prediction
NFNKEPKH_00017 VFG042780 Adhesive fimbriae 98.9 2.8e-258 67 510 0.8706 1 Adherence CofH prediction
NFNKEPKH_00018 VFG042781 Adhesive fimbriae 99.1 4.3e-186 1 341 1.0 1 Adherence CofI prediction
NFNKEPKH_00020 VFG042783 Adhesive fimbriae 74.1 1.2e-117 1 273 1.0 1 Adherence CofP prediction
NFNKEPKH_00079 VFG000839 Paa 74.3 8.1e-110 1 249 1.0 0.9881 Adherence outer membrane adhesin Paa prediction
NFNKEPKH_00098 VFG035394 AAI/SCI-II T6SS 71.7 2.5e-38 2 100 0.99 1 Effector delivery system PAAR domain-containing protein prediction
NFNKEPKH_00105 VFG035359 AAI/SCI-II T6SS 80.3 5.8e-237 1 492 1.0 1 Effector delivery system type VI secretion system contractile sheath large subunit prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NFNKEPKH_00078 BBM81203.1|GT4 100 1.95e-291 1 391 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
NFNKEPKH_00075 2.A.7.3.25 74.9 2.6e-121 1 299 0.9934 0.9836 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily