Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C415
  Reference Plasmid   NZ_CP009861.1
  Reference Plasmid Size   47560
  Reference Plasmid GC Content   0.45
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0164016 MDCIBFAN_00001 205 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -49T>C None
M0164017 MDCIBFAN_00001 526 3 Gut 0.38 protein_coding synonymous_variant LOW 273G>A Lys91Lys
M0164018 MDCIBFAN_00002 620 3 Gut 0.38 protein_coding missense_variant MODERATE 20C>T Ala7Val
M0164019 MDCIBFAN_00003 945 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -119C>A None
M0164020 MDCIBFAN_00003 967 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -97T>G None
M0164021 MDCIBFAN_00003 1010 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -54T>A None
M0164022 MDCIBFAN_00003 1036 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -28C>T None
M0164023 MDCIBFAN_00003 1282 3 Gut 0.38 protein_coding synonymous_variant LOW 219C>G Leu73Leu
M0164024 MDCIBFAN_00003 1378 3 Gut 0.38 protein_coding missense_variant MODERATE 315G>C Met105Ile
M0164025 MDCIBFAN_00005 1465 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -610A>T None
M0164026 MDCIBFAN_00005 1466 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -609A>T None
M0164027 MDCIBFAN_00005 1467 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -608A>T None
M0164028 MDCIBFAN_00004 1603 3 Gut 0.38 protein_coding missense_variant MODERATE 371A>G Lys124Arg
M0164029 MDCIBFAN_00004 1660 3 Gut 0.38 protein_coding missense_variant MODERATE 314A>G Gln105Arg
M0164030 MDCIBFAN_00004 1668 3 Gut 0.38 protein_coding synonymous_variant LOW 306G>A Gly102Gly
M0164031 MDCIBFAN_00004 1866 3 Gut 0.38 protein_coding synonymous_variant LOW 108G>A Gln36Gln
M0164032 MDCIBFAN_00005 2271 3 Gut 0.38 protein_coding missense_variant MODERATE 197T>C Val66Ala
M0164033 MDCIBFAN_00004 2697 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -724G>A None
M0164034 MDCIBFAN_00004 2921 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -948C>A None
M0164035 MDCIBFAN_00006 2991 4 Gut 0.50 protein_coding missense_variant MODERATE 31G>A Val11Ile
M0164036 MDCIBFAN_00007 3265 4 Gut 0.50 protein_coding synonymous_variant LOW 1062A>T Ala354Ala
M0164037 MDCIBFAN_00007 3268 3 Gut 0.38 protein_coding synonymous_variant LOW 1059A>G Gln353Gln
M0164038 MDCIBFAN_00007 3405 4 Gut 0.50 protein_coding missense_variant MODERATE 922T>C Ser308Pro
M0164039 MDCIBFAN_00007 3472 3 Gut 0.38 protein_coding missense_variant MODERATE 855C>A Asn285Lys
M0164040 MDCIBFAN_00007 3481 3 Gut 0.38 protein_coding synonymous_variant LOW 846G>A Thr282Thr
M0164041 MDCIBFAN_00007 3754 3 Gut 0.38 protein_coding synonymous_variant LOW 573C>T Arg191Arg
M0164042 MDCIBFAN_00007 3909 3 Gut 0.38 protein_coding missense_variant MODERATE 418G>C Ala140Pro
M0164043 MDCIBFAN_00007 3928 3 Gut 0.38 protein_coding synonymous_variant LOW 399A>T Val133Val
M0164044 MDCIBFAN_00007 3946 4 Gut 0.50 protein_coding synonymous_variant LOW 381A>G Thr127Thr
M0164045 MDCIBFAN_00007 3948 4 Gut 0.50 protein_coding missense_variant MODERATE 379A>G Thr127Ala
M0164046 MDCIBFAN_00007 3956 3 Gut 0.38 protein_coding missense_variant MODERATE 371G>A Ser124Asn
M0164047 MDCIBFAN_00007 4310 3 Gut 0.38 protein_coding missense_variant MODERATE 17C>T Thr6Ile
M0164048 MDCIBFAN_00008 4344 3 Gut 0.38 protein_coding synonymous_variant LOW 171A>T Val57Val
M0164049 MDCIBFAN_00004 5005 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -3032C>T None
M0164050 MDCIBFAN_00010 5928 3 Gut 0.38 protein_coding synonymous_variant LOW 477G>A Leu159Leu
M0164051 MDCIBFAN_00010 6051 3 Gut 0.38 protein_coding synonymous_variant LOW 354G>A Leu118Leu
M0164052 MDCIBFAN_00004 6422 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4449T>C None
M0164053 MDCIBFAN_00014 8770 4 Gut 0.50 protein_coding missense_variant MODERATE 428T>G Val143Gly
M0164054 MDCIBFAN_00017 9521 3 Gut 0.38 protein_coding synonymous_variant LOW 33A>C Thr11Thr
M0164055 MDCIBFAN_00019 11120 4 Gut 0.50 protein_coding missense_variant MODERATE 803A>G His268Arg
M0164056 MDCIBFAN_00019 11385 3 Gut 0.38 protein_coding synonymous_variant LOW 1068T>G Thr356Thr
M0164057 MDCIBFAN_00019 11415 3 Gut 0.38 protein_coding synonymous_variant LOW 1098A>G Leu366Leu
M0164058 MDCIBFAN_00011 11459 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4530G>A None
M0164059 MDCIBFAN_00011 11493 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4564G>A None
M0164060 MDCIBFAN_00021 11809 3 Gut 0.38 protein_coding synonymous_variant LOW 15C>A Thr5Thr
M0164061 MDCIBFAN_00027 14306 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -160G>A None
M0164062 MDCIBFAN_00027 14307 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -159A>T None
M0164063 MDCIBFAN_00027 14309 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -157A>T None
M0164064 MDCIBFAN_00027 14440 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -26G>A None
M0164065 MDCIBFAN_00027 14819 3 Gut 0.38 protein_coding missense_variant MODERATE 354G>A Met118Ile
M0164066 MDCIBFAN_00029 15559 4 Gut 0.50 protein_coding synonymous_variant LOW 429A>G Val143Val
M0164067 MDCIBFAN_00029 15569 4 Gut 0.50 protein_coding missense_variant MODERATE 439G>T Ala147Ser
M0164068 MDCIBFAN_00029 15571 4 Gut 0.50 protein_coding synonymous_variant LOW 441C>G Ala147Ala
M0164069 MDCIBFAN_00029 15592 4 Gut 0.50 protein_coding missense_variant MODERATE 462C>A Asp154Glu
M0164070 MDCIBFAN_00029 15595 4 Gut 0.50 protein_coding synonymous_variant LOW 465T>C Arg155Arg
M0164071 MDCIBFAN_00029 15604 4 Gut 0.50 protein_coding missense_variant MODERATE 474C>G Asp158Glu
M0164072 MDCIBFAN_00029 15605 3 Gut 0.38 protein_coding synonymous_variant LOW 475C>T Leu159Leu
M0164073 MDCIBFAN_00029 15616 4 Gut 0.50 protein_coding synonymous_variant LOW 486A>G Lys162Lys
M0164074 MDCIBFAN_00029 15622 4 Gut 0.50 protein_coding synonymous_variant LOW 492A>G Glu164Glu
M0164075 MDCIBFAN_00029 15625 4 Gut 0.50 protein_coding synonymous_variant LOW 495A>G Ala165Ala
M0164076 MDCIBFAN_00029 15643 4 Gut 0.50 protein_coding synonymous_variant LOW 513T>C Tyr171Tyr
M0164077 MDCIBFAN_00030 15857 3 Gut 0.38 protein_coding missense_variant MODERATE 188T>C Val63Ala
M0164078 MDCIBFAN_00032 16254 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -371C>T None
M0164079 MDCIBFAN_00032 16324 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -301T>C None
M0164080 MDCIBFAN_00032 16548 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -77C>T None
M0164081 MDCIBFAN_00032 16565 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -60T>C None
M0164082 MDCIBFAN_00032 16580 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -45C>T None
M0164083 MDCIBFAN_00032 16620 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -5T>C None
M0164084 MDCIBFAN_00032 16632 4 Gut 0.50 protein_coding missense_variant MODERATE 8A>C Glu3Ala
M0164085 MDCIBFAN_00032 16684 4 Gut 0.50 protein_coding synonymous_variant LOW 60C>T Asp20Asp
M0164086 MDCIBFAN_00032 16744 4 Gut 0.50 protein_coding missense_variant MODERATE 120G>T Glu40Asp
M0164087 MDCIBFAN_00032 17034 5 Gut 0.63 protein_coding missense_variant MODERATE 410T>C Leu137Pro
M0164088 MDCIBFAN_00033 17228 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -98T>G None
M0164089 MDCIBFAN_00033 17244 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -82T>C None
M0164090 MDCIBFAN_00033 17272 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -54T>A None
M0164091 MDCIBFAN_00033 17322 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -4C>T None
M0164092 MDCIBFAN_00033 17324 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0164093 MDCIBFAN_00033 17392 4 Gut 0.50 protein_coding missense_variant MODERATE 67A>G Ser23Gly
M0164094 MDCIBFAN_00033 17523 4 Gut 0.50 protein_coding synonymous_variant LOW 198C>T Arg66Arg
M0164095 MDCIBFAN_00033 17529 4 Gut 0.50 protein_coding synonymous_variant LOW 204A>G Ser68Ser
M0164096 MDCIBFAN_00033 17535 4 Gut 0.50 protein_coding synonymous_variant LOW 210A>G Lys70Lys
M0164097 MDCIBFAN_00033 17536 4 Gut 0.50 protein_coding missense_variant MODERATE 211A>G Lys71Glu
M0164098 MDCIBFAN_00033 17547 4 Gut 0.50 protein_coding synonymous_variant LOW 222C>T Ser74Ser
M0164099 MDCIBFAN_00033 17554 4 Gut 0.50 protein_coding missense_variant MODERATE 229G>T Val77Phe
M0164100 MDCIBFAN_00034 17657 4 Gut 0.50 protein_coding synonymous_variant LOW 63T>A Val21Val
M0164101 MDCIBFAN_00034 17699 4 Gut 0.50 protein_coding synonymous_variant LOW 105A>G Gly35Gly
M0164102 MDCIBFAN_00035 17967 3 Gut 0.38 protein_coding missense_variant MODERATE 101A>G His34Arg
M0164103 MDCIBFAN_00035 17979 5 Gut 0.63 protein_coding missense_variant MODERATE 113A>G Glu38Gly
M0164104 MDCIBFAN_00035 18007 3 Gut 0.38 protein_coding synonymous_variant LOW 141G>A Glu47Glu
M0164105 MDCIBFAN_00035 18032 4 Gut 0.50 protein_coding missense_variant MODERATE 166C>A Leu56Ile
M0164106 MDCIBFAN_00035 18039 3 Gut 0.38 protein_coding missense_variant MODERATE 173G>A Ser58Asn
M0164107 MDCIBFAN_00035 18072 3 Gut 0.38 protein_coding missense_variant MODERATE 206C>A Ala69Glu
M0164108 MDCIBFAN_00035 18149 4 Gut 0.50 protein_coding missense_variant MODERATE 283T>C Cys95Arg
M0164109 MDCIBFAN_00036 18245 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -108C>T None
M0164110 MDCIBFAN_00036 18272 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -81G>A None
M0164111 MDCIBFAN_00036 18299 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -54G>T None
M0164112 MDCIBFAN_00036 18311 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -42T>C None
M0164113 MDCIBFAN_00036 18316 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -37C>T None
M0164114 MDCIBFAN_00036 18327 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -26A>G None
M0164115 MDCIBFAN_00036 18339 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -14G>A None
M0164116 MDCIBFAN_00036 18362 3 Gut 0.38 protein_coding missense_variant MODERATE 10G>C Val4Leu
M0164117 MDCIBFAN_00036 18388 3 Gut 0.38 protein_coding synonymous_variant LOW 36C>T Ala12Ala
M0164118 MDCIBFAN_00036 18394 4 Gut 0.50 protein_coding missense_variant MODERATE 42G>T Trp14Cys
M0164119 MDCIBFAN_00036 18401 4 Gut 0.50 protein_coding missense_variant MODERATE 49T>A Phe17Ile
M0164120 MDCIBFAN_00036 18413 4 Gut 0.50 protein_coding missense_variant MODERATE 61T>G Phe21Val
M0164121 MDCIBFAN_00036 18453 4 Gut 0.50 protein_coding missense_variant MODERATE 101C>G Thr34Arg
M0164122 MDCIBFAN_00036 18465 4 Gut 0.50 protein_coding missense_variant MODERATE 113G>T Arg38Leu
M0164123 MDCIBFAN_00036 18472 4 Gut 0.50 protein_coding synonymous_variant LOW 120A>G Arg40Arg
M0164124 MDCIBFAN_00036 18483 4 Gut 0.50 protein_coding missense_variant MODERATE 131A>G His44Arg
M0164125 MDCIBFAN_00036 18493 3 Gut 0.38 protein_coding missense_variant MODERATE 141A>C Leu47Phe
M0164126 MDCIBFAN_00037 18650 4 Gut 0.50 protein_coding missense_variant MODERATE 96C>A Asp32Glu
M0164127 MDCIBFAN_00037 18653 4 Gut 0.50 protein_coding synonymous_variant LOW 99A>G Glu33Glu
M0164128 MDCIBFAN_00037 18705 3 Gut 0.38 protein_coding synonymous_variant LOW 151C>T Leu51Leu
M0164129 MDCIBFAN_00037 18731 3 Gut 0.38 protein_coding synonymous_variant LOW 177C>T Gly59Gly
M0164130 MDCIBFAN_00037 18758 3 Gut 0.38 protein_coding synonymous_variant LOW 204G>A Glu68Glu
M0164131 MDCIBFAN_00037 18765 3 Gut 0.38 protein_coding synonymous_variant LOW 211C>T Leu71Leu
M0164132 MDCIBFAN_00037 18779 3 Gut 0.38 protein_coding synonymous_variant LOW 225G>A Glu75Glu
M0164133 MDCIBFAN_00037 18783 3 Gut 0.38 protein_coding missense_variant MODERATE 229A>G Lys77Glu
M0164134 MDCIBFAN_00037 18785 3 Gut 0.38 protein_coding missense_variant MODERATE 231A>T Lys77Asn
M0164135 MDCIBFAN_00037 18789 3 Gut 0.38 protein_coding missense_variant MODERATE 235C>T His79Tyr
M0164136 MDCIBFAN_00037 18794 3 Gut 0.38 protein_coding synonymous_variant LOW 240T>A Pro80Pro
M0164137 MDCIBFAN_00037 18816 3 Gut 0.38 protein_coding missense_variant MODERATE 262A>G Ile88Val
M0164138 MDCIBFAN_00037 18852 4 Gut 0.50 protein_coding missense_variant MODERATE 298G>A Glu100Lys
M0164139 MDCIBFAN_00037 18866 4 Gut 0.50 protein_coding synonymous_variant LOW 312A>G Ser104Ser
M0164140 MDCIBFAN_00037 18890 3 Gut 0.38 protein_coding synonymous_variant LOW 336C>T Thr112Thr
M0164141 MDCIBFAN_00037 18942 4 Gut 0.50 protein_coding missense_variant MODERATE 388T>C Cys130Arg
M0164142 MDCIBFAN_00037 18945 4 Gut 0.50 protein_coding missense_variant MODERATE 391C>A Leu131Ile
M0164143 MDCIBFAN_00038 18988 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -212C>T None
M0164144 MDCIBFAN_00038 18991 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -209T>C None
M0164145 MDCIBFAN_00038 19211 4 Gut 0.50 protein_coding missense_variant MODERATE 12A>T Gln4His
M0164146 MDCIBFAN_00038 19512 4 Gut 0.50 protein_coding synonymous_variant LOW 313C>T Leu105Leu
M0164147 MDCIBFAN_00038 19675 3 Gut 0.38 protein_coding missense_variant MODERATE 476A>T Lys159Ile
M0164148 MDCIBFAN_00038 19822 4 Gut 0.50 protein_coding splice_region_variant&stop_retained_variant LOW 623A>G Ter208Ter
M0164149 MDCIBFAN_00039 19834 3 Gut 0.38 protein_coding synonymous_variant LOW 12C>G Leu4Leu
M0164150 MDCIBFAN_00039 19891 4 Gut 0.50 protein_coding synonymous_variant LOW 69A>G Glu23Glu
M0164151 MDCIBFAN_00039 20269 4 Gut 0.50 protein_coding synonymous_variant LOW 447G>T Ala149Ala
M0164152 MDCIBFAN_00039 20281 3 Gut 0.38 protein_coding synonymous_variant LOW 459C>T Gly153Gly
M0164153 MDCIBFAN_00039 20320 3 Gut 0.38 protein_coding synonymous_variant LOW 498G>A Lys166Lys
M0164154 MDCIBFAN_00039 20329 4 Gut 0.50 protein_coding synonymous_variant LOW 507T>C Arg169Arg
M0164155 MDCIBFAN_00039 20779 3 Gut 0.38 protein_coding synonymous_variant LOW 957C>T Ser319Ser
M0164156 MDCIBFAN_00039 20801 4 Gut 0.50 protein_coding synonymous_variant LOW 979T>C Leu327Leu
M0164157 MDCIBFAN_00039 20836 4 Gut 0.50 protein_coding synonymous_variant LOW 1014C>T Gly338Gly
M0164158 MDCIBFAN_00039 20881 4 Gut 0.50 protein_coding synonymous_variant LOW 1059T>G Ala353Ala
M0164159 MDCIBFAN_00039 20980 4 Gut 0.50 protein_coding missense_variant MODERATE 1158G>T Glu386Asp
M0164160 MDCIBFAN_00039 21061 3 Gut 0.38 protein_coding synonymous_variant LOW 1239C>T Val413Val
M0164161 MDCIBFAN_00039 21076 3 Gut 0.38 protein_coding synonymous_variant LOW 1254C>T Ser418Ser
M0164162 MDCIBFAN_00039 21080 3 Gut 0.38 protein_coding missense_variant MODERATE 1258A>C Ser420Arg
M0164163 MDCIBFAN_00039 21082 3 Gut 0.38 protein_coding synonymous_variant LOW 1260T>C Ser420Ser
M0164164 MDCIBFAN_00039 21087 3 Gut 0.38 protein_coding missense_variant MODERATE 1265C>A Ala422Glu
M0164165 MDCIBFAN_00040 21290 3 Gut 0.38 protein_coding synonymous_variant LOW 78C>T Arg26Arg
M0164166 MDCIBFAN_00040 21299 3 Gut 0.38 protein_coding synonymous_variant LOW 87G>A Pro29Pro
M0164167 MDCIBFAN_00040 21432 4 Gut 0.50 protein_coding missense_variant MODERATE 220G>A Gly74Ser
M0164168 MDCIBFAN_00040 21482 4 Gut 0.50 protein_coding synonymous_variant LOW 270A>C Ala90Ala
M0164169 MDCIBFAN_00040 21854 3 Gut 0.38 protein_coding synonymous_variant LOW 642G>A Leu214Leu
M0164170 MDCIBFAN_00040 21920 4 Gut 0.50 protein_coding synonymous_variant LOW 708C>G Thr236Thr
M0164171 MDCIBFAN_00041 21964 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -525A>G None
M0164172 MDCIBFAN_00041 22011 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -478G>T None
M0164173 MDCIBFAN_00041 22094 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -395A>G None
M0164174 MDCIBFAN_00041 22217 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -272G>A None
M0164175 MDCIBFAN_00041 22402 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -87C>T None
M0164176 MDCIBFAN_00041 22479 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -10C>T None
M0164177 MDCIBFAN_00041 22492 3 Gut 0.38 protein_coding missense_variant MODERATE 4G>A Ala2Thr
M0164178 MDCIBFAN_00041 22525 3 Gut 0.38 protein_coding synonymous_variant LOW 37T>C Leu13Leu
M0164179 MDCIBFAN_00041 22659 3 Gut 0.38 protein_coding synonymous_variant LOW 171G>T Gly57Gly
M0164180 MDCIBFAN_00047 28446 3 Gut 0.38 protein_coding synonymous_variant LOW 66A>G Pro22Pro
M0164181 MDCIBFAN_00047 28447 5 Gut 0.63 protein_coding missense_variant MODERATE 67G>A Ala23Thr
M0164182 MDCIBFAN_00053 32535 5 Gut 0.63 protein_coding missense_variant MODERATE 1198T>C Tyr400His
M0164183 MDCIBFAN_00053 32714 3 Gut 0.38 protein_coding synonymous_variant LOW 1377A>G Val459Val
M0164184 MDCIBFAN_00055 33459 3 Gut 0.38 protein_coding synonymous_variant LOW 111G>T Ser37Ser
M0164185 MDCIBFAN_00056 36484 3 Gut 0.38 protein_coding synonymous_variant LOW 2700G>A Ala900Ala
M0164186 MDCIBFAN_00062 39572 6 Gut 0.75 protein_coding missense_variant MODERATE 393G>T Met131Ile
M0164187 MDCIBFAN_00062 39704 4 Gut 0.50 protein_coding missense_variant MODERATE 525A>C Arg175Ser
M0164188 MDCIBFAN_00064 41166 3 Gut 0.38 protein_coding synonymous_variant LOW 258T>G Gly86Gly
M0164189 MDCIBFAN_00064 41578 3 Gut 0.38 protein_coding missense_variant MODERATE 670A>G Asn224Asp
M0164190 MDCIBFAN_00064 41582 3 Gut 0.38 protein_coding missense_variant MODERATE 674C>G Ala225Gly
M0164191 MDCIBFAN_00064 41583 3 Gut 0.38 protein_coding synonymous_variant LOW 675T>A Ala225Ala
M0164192 MDCIBFAN_00064 41589 3 Gut 0.38 protein_coding synonymous_variant LOW 681C>T Tyr227Tyr
M0164193 MDCIBFAN_00064 41595 3 Gut 0.38 protein_coding synonymous_variant LOW 687A>C Ala229Ala
M0164194 MDCIBFAN_00064 41599 3 Gut 0.38 protein_coding missense_variant MODERATE 691G>A Asp231Asn
M0164195 MDCIBFAN_00064 41601 3 Gut 0.38 protein_coding synonymous_variant LOW 693C>T Asp231Asp
M0164196 MDCIBFAN_00064 41604 3 Gut 0.38 protein_coding synonymous_variant LOW 696T>C Ala232Ala
M0164197 MDCIBFAN_00064 41613 3 Gut 0.38 protein_coding synonymous_variant LOW 705G>A Ala235Ala
M0164198 MDCIBFAN_00064 41615 3 Gut 0.38 protein_coding missense_variant MODERATE 707G>A Arg236Gln
M0164199 MDCIBFAN_00064 41625 3 Gut 0.38 protein_coding synonymous_variant LOW 717T>A Ile239Ile
M0164200 MDCIBFAN_00064 42384 3 Gut 0.38 protein_coding missense_variant MODERATE 1476C>A Asp492Glu
M0164201 MDCIBFAN_00064 42451 3 Gut 0.38 protein_coding missense_variant MODERATE 1543A>G Ile515Val
M0164202 MDCIBFAN_00064 42474 3 Gut 0.38 protein_coding synonymous_variant LOW 1566A>T Thr522Thr
M0164203 MDCIBFAN_00064 42477 3 Gut 0.38 protein_coding synonymous_variant LOW 1569C>A Val523Val
M0164204 MDCIBFAN_00064 42483 3 Gut 0.38 protein_coding synonymous_variant LOW 1575T>C Gly525Gly
M0164205 MDCIBFAN_00064 42492 4 Gut 0.50 protein_coding synonymous_variant LOW 1584G>A Glu528Glu
M0164206 MDCIBFAN_00064 42504 3 Gut 0.38 protein_coding synonymous_variant LOW 1596C>G Arg532Arg
M0164207 MDCIBFAN_00066 44973 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -74G>A None
M0164208 MDCIBFAN_00066 44989 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -90A>G None
M0164209 MDCIBFAN_00066 44995 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -96T>C None
M0164210 MDCIBFAN_00066 45026 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -127C>T None
M0164211 MDCIBFAN_00067 45438 4 Gut 0.50 protein_coding missense_variant MODERATE 65T>C Ile22Thr
M0164212 MDCIBFAN_00067 45439 4 Gut 0.50 protein_coding synonymous_variant LOW 66T>A Ile22Ile
M0164213 MDCIBFAN_00067 45441 4 Gut 0.50 protein_coding missense_variant MODERATE 68A>T Asn23Ile
M0164214 MDCIBFAN_00067 45778 4 Gut 0.50 protein_coding synonymous_variant LOW 405C>T Ala135Ala
M0164215 MDCIBFAN_00067 45847 4 Gut 0.50 protein_coding synonymous_variant LOW 474A>G Thr158Thr
M0164216 MDCIBFAN_00067 46228 4 Gut 0.50 protein_coding synonymous_variant LOW 855T>C Thr285Thr
M0164217 MDCIBFAN_00067 46240 4 Gut 0.50 protein_coding synonymous_variant LOW 867C>T Ser289Ser
M0164218 MDCIBFAN_00067 46270 4 Gut 0.50 protein_coding synonymous_variant LOW 897A>T Gly299Gly
M0164219 MDCIBFAN_00066 46407 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1508G>A None
M0164220 MDCIBFAN_00066 46505 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1606A>G None
M0164221 MDCIBFAN_00066 46738 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1839C>T None
M0164222 MDCIBFAN_00066 46874 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1975G>A None
M0164223 MDCIBFAN_00068 47123 3 Gut 0.38 protein_coding synonymous_variant LOW 129A>G Leu43Leu
M0164224 MDCIBFAN_00066 47293 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -2394A>T None
M0164225 MDCIBFAN_00064 43166 3 Gut 0.38 protein_coding missense_variant MODERATE 2258T>A Leu753Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MDCIBFAN_00029 AIX66921.1|GH108 100 3.7e-136 1 180 1 0.9945





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term