Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C428
  Reference Plasmid   NZ_CP012356.1
  Reference Plasmid Size   53985
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0087213 JNHFCHCL_00034 25246 3 Skin 0.03 protein_coding synonymous_variant LOW 838T>C Leu280Leu
M0087214 JNHFCHCL_00034 25247 3 Skin 0.03 protein_coding synonymous_variant LOW 837T>C Phe279Phe
M0087215 JNHFCHCL_00034 25847 16 Skin 0.15 protein_coding synonymous_variant LOW 237T>C Leu79Leu
M0087216 JNHFCHCL_00034 28674 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2591T>C None
M0087217 JNHFCHCL_00034 28677 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2594G>A None
M0087218 JNHFCHCL_00034 28684 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2601C>A None
M0087219 JNHFCHCL_00038 28864 4 Skin 0.04 protein_coding synonymous_variant LOW 33G>A Glu11Glu
M0087220 JNHFCHCL_00038 29059 9 Skin 0.08 protein_coding synonymous_variant LOW 228C>T Ile76Ile
M0087221 JNHFCHCL_00038 29143 3 Skin 0.03 protein_coding synonymous_variant LOW 312G>T Thr104Thr
M0087222 JNHFCHCL_00038 29218 3 Skin 0.03 protein_coding synonymous_variant LOW 387C>T Phe129Phe
M0087223 JNHFCHCL_00034 29598 13 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3515C>T None
M0087224 JNHFCHCL_00034 29614 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3531C>A None
M0087225 JNHFCHCL_00034 29648 16 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3565G>A None
M0087226 JNHFCHCL_00034 29674 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3591C>A None
M0087227 JNHFCHCL_00034 29742 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3659G>C None
M0087228 JNHFCHCL_00039 29767 4 Skin 0.04 protein_coding missense_variant MODERATE 24A>T Arg8Ser
M0087229 JNHFCHCL_00039 29770 4 Skin 0.04 protein_coding synonymous_variant LOW 27G>T Pro9Pro
M0087230 JNHFCHCL_00039 29911 5 Skin 0.05 protein_coding synonymous_variant LOW 168G>A Gln56Gln
M0087231 JNHFCHCL_00039 29926 4 Skin 0.04 protein_coding synonymous_variant LOW 183T>C Ile61Ile
M0087232 JNHFCHCL_00039 29944 4 Skin 0.04 protein_coding synonymous_variant LOW 201G>A Ala67Ala
M0087233 JNHFCHCL_00039 30010 4 Skin 0.04 protein_coding synonymous_variant LOW 267G>A Pro89Pro
M0087234 JNHFCHCL_00039 30031 4 Skin 0.04 protein_coding synonymous_variant LOW 288T>C Leu96Leu
M0087235 JNHFCHCL_00039 30050 4 Skin 0.04 protein_coding missense_variant MODERATE 307G>C Ala103Pro
M0087236 JNHFCHCL_00039 30052 4 Skin 0.04 protein_coding synonymous_variant LOW 309T>G Ala103Ala
M0087237 JNHFCHCL_00039 30055 4 Skin 0.04 protein_coding synonymous_variant LOW 312T>C Ala104Ala
M0087238 JNHFCHCL_00039 30059 4 Skin 0.04 protein_coding missense_variant MODERATE 316A>C Asn106His
M0087239 JNHFCHCL_00039 30095 3 Skin 0.03 protein_coding missense_variant MODERATE 352C>A Leu118Ile
M0087240 JNHFCHCL_00039 30190 10 Skin 0.09 protein_coding synonymous_variant LOW 447G>T Pro149Pro
M0087241 JNHFCHCL_00039 30193 11 Skin 0.10 protein_coding synonymous_variant LOW 450A>C Ala150Ala
M0087242 JNHFCHCL_00050 39494 3 Skin 0.03 protein_coding missense_variant MODERATE 2011C>G Leu671Val
M0087243 JNHFCHCL_00050 39791 3 Skin 0.03 protein_coding missense_variant MODERATE 2308A>G Thr770Ala
M0087244 JNHFCHCL_00050 39808 3 Skin 0.03 protein_coding synonymous_variant LOW 2325C>T Arg775Arg
M0087245 JNHFCHCL_00050 39818 4 Skin 0.04 protein_coding missense_variant MODERATE 2335A>G Asn779Asp
M0087246 JNHFCHCL_00050 39967 3 Skin 0.03 protein_coding synonymous_variant LOW 2484T>C Ala828Ala
M0087247 JNHFCHCL_00035 26584 6 Skin 0.06 protein_coding synonymous_variant LOW 135G>A Ala45Ala
M0087248 JNHFCHCL_00033 22161 4 Skin 0.04 protein_coding synonymous_variant LOW 1407C>T Ser469Ser
M0087249 JNHFCHCL_00033 22203 12 Skin 0.11 protein_coding synonymous_variant LOW 1365C>T Ile455Ile
M0087250 JNHFCHCL_00033 22207 12 Skin 0.11 protein_coding missense_variant MODERATE 1361T>C Val454Ala
M0087251 JNHFCHCL_00033 22212 12 Skin 0.11 protein_coding synonymous_variant LOW 1356C>G Gly452Gly
M0087252 JNHFCHCL_00033 22213 12 Skin 0.11 protein_coding missense_variant MODERATE 1355G>C Gly452Ala
M0087253 JNHFCHCL_00033 22217 12 Skin 0.11 protein_coding missense_variant MODERATE 1351A>G Arg451Gly
M0087254 JNHFCHCL_00033 23498 5 Skin 0.05 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0087255 JNHFCHCL_00033 23523 5 Skin 0.05 protein_coding synonymous_variant LOW 45C>T Phe15Phe
M0087256 JNHFCHCL_00033 23526 5 Skin 0.05 protein_coding synonymous_variant LOW 42G>A Arg14Arg
M0087257 JNHFCHCL_00034 23747 4 Skin 0.04 protein_coding synonymous_variant LOW 2337A>G Lys779Lys
M0087258 JNHFCHCL_00034 23750 4 Skin 0.04 protein_coding synonymous_variant LOW 2334T>C Pro778Pro
M0087259 JNHFCHCL_00034 23753 4 Skin 0.04 protein_coding synonymous_variant LOW 2331C>T Asp777Asp
M0087260 JNHFCHCL_00034 23756 4 Skin 0.04 protein_coding synonymous_variant LOW 2328G>A Val776Val
M0087261 JNHFCHCL_00034 23771 4 Skin 0.04 protein_coding synonymous_variant LOW 2313C>T Val771Val
M0087262 JNHFCHCL_00034 23774 4 Skin 0.04 protein_coding synonymous_variant LOW 2310T>C Gly770Gly
M0087263 JNHFCHCL_00034 23777 4 Skin 0.04 protein_coding synonymous_variant LOW 2307A>G Lys769Lys
M0087264 JNHFCHCL_00034 23780 4 Skin 0.04 protein_coding synonymous_variant LOW 2304G>A Gln768Gln
M0087265 JNHFCHCL_00034 24091 4 Skin 0.04 protein_coding synonymous_variant LOW 1993C>T Leu665Leu
M0087266 JNHFCHCL_00041 31700 8 Skin 0.07 protein_coding missense_variant MODERATE 359T>C Val120Ala
M0087267 JNHFCHCL_00043 33421 3 Skin 0.03 protein_coding synonymous_variant LOW 675T>A Ser225Ser
M0087268 JNHFCHCL_00043 33422 3 Skin 0.03 protein_coding missense_variant MODERATE 676T>G Ser226Ala
M0087269 JNHFCHCL_00043 33427 3 Skin 0.03 protein_coding synonymous_variant LOW 681G>A Glu227Glu
M0087270 JNHFCHCL_00043 33433 3 Skin 0.03 protein_coding synonymous_variant LOW 687G>A Ser229Ser
M0087271 JNHFCHCL_00043 33496 4 Skin 0.04 protein_coding synonymous_variant LOW 750C>A Ser250Ser
M0087272 JNHFCHCL_00043 33499 4 Skin 0.04 protein_coding missense_variant MODERATE 753G>T Gln251His
M0087273 JNHFCHCL_00043 33502 4 Skin 0.04 protein_coding synonymous_variant LOW 756G>C Arg252Arg
M0087274 JNHFCHCL_00033 22623 4 Skin 0.04 protein_coding synonymous_variant LOW 945G>T Gly315Gly
M0087275 JNHFCHCL_00033 22776 4 Skin 0.04 protein_coding synonymous_variant LOW 792C>G Arg264Arg
M0087276 JNHFCHCL_00033 23463 3 Skin 0.03 protein_coding synonymous_variant LOW 105A>G Ala35Ala
M0087277 JNHFCHCL_00033 23469 3 Skin 0.03 protein_coding synonymous_variant LOW 99C>T Ala33Ala
M0087278 JNHFCHCL_00037 27332 8 Skin 0.07 protein_coding synonymous_variant LOW 681C>T Thr227Thr
M0087279 JNHFCHCL_00037 27425 8 Skin 0.07 protein_coding synonymous_variant LOW 588A>G Ser196Ser
M0087280 JNHFCHCL_00034 28589 13 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2506A>G None
M0087281 JNHFCHCL_00034 28611 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2528G>T None
M0087282 JNHFCHCL_00034 28614 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2531G>T None
M0087283 JNHFCHCL_00034 28616 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2533C>T None
M0087284 JNHFCHCL_00033 28481 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4914A>C None
M0087285 JNHFCHCL_00038 28909 4 Skin 0.04 protein_coding synonymous_variant LOW 78T>C Pro26Pro
M0087286 JNHFCHCL_00038 28991 6 Skin 0.06 protein_coding missense_variant MODERATE 160G>A Ala54Thr
M0087287 JNHFCHCL_00038 28996 6 Skin 0.06 protein_coding synonymous_variant LOW 165G>A Arg55Arg
M0087288 JNHFCHCL_00038 29114 6 Skin 0.06 protein_coding synonymous_variant LOW 283T>C Leu95Leu
M0087289 JNHFCHCL_00038 29122 6 Skin 0.06 protein_coding synonymous_variant LOW 291T>G Gly97Gly
M0087290 JNHFCHCL_00038 29123 6 Skin 0.06 protein_coding synonymous_variant LOW 292C>T Leu98Leu
M0087291 JNHFCHCL_00038 29187 6 Skin 0.06 protein_coding missense_variant MODERATE 356T>C Ile119Thr
M0087292 JNHFCHCL_00038 29248 5 Skin 0.05 protein_coding missense_variant MODERATE 417G>C Glu139Asp
M0087293 JNHFCHCL_00039 29888 5 Skin 0.05 protein_coding synonymous_variant LOW 145C>T Leu49Leu
M0087294 JNHFCHCL_00039 29891 5 Skin 0.05 protein_coding missense_variant MODERATE 148C>A Leu50Met
M0087295 JNHFCHCL_00039 30114 6 Skin 0.06 protein_coding missense_variant MODERATE 371C>A Ala124Glu
M0087296 JNHFCHCL_00039 30115 6 Skin 0.06 protein_coding synonymous_variant LOW 372A>G Ala124Ala
M0087297 JNHFCHCL_00034 25283 3 Skin 0.03 protein_coding synonymous_variant LOW 801G>A Lys267Lys
M0087298 JNHFCHCL_00048 36921 9 Skin 0.08 protein_coding missense_variant MODERATE 251A>G Asn84Ser
M0087299 JNHFCHCL_00065 52849 16 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1154T>C None
M0087300 JNHFCHCL_00065 53740 15 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2045G>A None
M0087301 JNHFCHCL_00029 19345 15 Skin 0.14 protein_coding missense_variant MODERATE 161C>G Ser54Trp
M0087302 JNHFCHCL_00032 21323 16 Skin 0.15 protein_coding missense_variant MODERATE 137T>G Val46Gly
M0087303 JNHFCHCL_00050 37582 6 Skin 0.06 protein_coding synonymous_variant LOW 99G>C Pro33Pro
M0087304 JNHFCHCL_00050 37583 6 Skin 0.06 protein_coding missense_variant MODERATE 100G>T Ala34Ser
M0087305 JNHFCHCL_00050 38119 7 Skin 0.06 protein_coding synonymous_variant LOW 636T>C Pro212Pro
M0087306 JNHFCHCL_00050 38120 7 Skin 0.06 protein_coding missense_variant MODERATE 637A>G Lys213Glu
M0087307 JNHFCHCL_00026 16198 3 Skin 0.03 protein_coding missense_variant MODERATE 94A>G Ile32Val
M0087308 JNHFCHCL_00027 16599 3 Skin 0.03 protein_coding missense_variant MODERATE 7C>G Pro3Ala
M0087309 JNHFCHCL_00019 16772 8 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4055G>A None
M0087310 JNHFCHCL_00019 16776 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4059A>G None
M0087311 JNHFCHCL_00028 16853 4 Skin 0.04 protein_coding synonymous_variant LOW 609G>A Ala203Ala
M0087312 JNHFCHCL_00028 16862 4 Skin 0.04 protein_coding synonymous_variant LOW 600T>C Leu200Leu
M0087313 JNHFCHCL_00028 16892 7 Skin 0.06 protein_coding synonymous_variant LOW 570C>T Asp190Asp
M0087314 JNHFCHCL_00028 16937 8 Skin 0.07 protein_coding synonymous_variant LOW 525T>G Thr175Thr
M0087315 JNHFCHCL_00028 16941 7 Skin 0.06 protein_coding missense_variant MODERATE 521T>C Val174Ala
M0087316 JNHFCHCL_00028 16943 7 Skin 0.06 protein_coding missense_variant MODERATE 519G>C Gln173His
M0087317 JNHFCHCL_00028 17003 3 Skin 0.03 protein_coding synonymous_variant LOW 459T>C Asp153Asp
M0087318 JNHFCHCL_00028 17006 3 Skin 0.03 protein_coding synonymous_variant LOW 456T>C Ser152Ser
M0087319 JNHFCHCL_00028 17012 3 Skin 0.03 protein_coding synonymous_variant LOW 450T>C Gly150Gly
M0087320 JNHFCHCL_00028 17018 3 Skin 0.03 protein_coding synonymous_variant LOW 444A>C Gly148Gly
M0087321 JNHFCHCL_00028 17068 7 Skin 0.06 protein_coding missense_variant MODERATE 394G>A Ala132Thr
M0087322 JNHFCHCL_00028 17099 3 Skin 0.03 protein_coding missense_variant MODERATE 363T>G His121Gln
M0087323 JNHFCHCL_00028 17121 3 Skin 0.03 protein_coding missense_variant MODERATE 341T>C Val114Ala
M0087324 JNHFCHCL_00028 17163 4 Skin 0.04 protein_coding missense_variant MODERATE 299T>C Val100Ala
M0087325 JNHFCHCL_00029 17817 7 Skin 0.06 protein_coding synonymous_variant LOW 1689G>A Glu563Glu
M0087326 JNHFCHCL_00029 18033 6 Skin 0.06 protein_coding synonymous_variant LOW 1473C>A Arg491Arg
M0087327 JNHFCHCL_00032 20563 5 Skin 0.05 protein_coding synonymous_variant LOW 897G>T Ala299Ala
M0087328 JNHFCHCL_00032 20566 5 Skin 0.05 protein_coding synonymous_variant LOW 894C>T Thr298Thr
M0087329 JNHFCHCL_00032 21163 12 Skin 0.11 protein_coding synonymous_variant LOW 297T>C Ile99Ile
M0087330 JNHFCHCL_00032 21388 5 Skin 0.05 protein_coding synonymous_variant LOW 72C>A Pro24Pro
M0087331 JNHFCHCL_00033 21472 8 Skin 0.07 protein_coding missense_variant MODERATE 2096A>G Lys699Arg
M0087332 JNHFCHCL_00033 21521 3 Skin 0.03 protein_coding missense_variant MODERATE 2047C>T Pro683Ser
M0087333 JNHFCHCL_00033 21613 3 Skin 0.03 protein_coding missense_variant MODERATE 1955G>A Arg652Lys
M0087334 JNHFCHCL_00033 21657 4 Skin 0.04 protein_coding synonymous_variant LOW 1911G>A Pro637Pro
M0087335 JNHFCHCL_00033 22000 4 Skin 0.04 protein_coding missense_variant MODERATE 1568A>G Gln523Arg
M0087336 JNHFCHCL_00033 22195 5 Skin 0.05 protein_coding missense_variant MODERATE 1373G>T Trp458Leu
M0087337 JNHFCHCL_00033 22670 3 Skin 0.03 protein_coding synonymous_variant LOW 898T>C Leu300Leu
M0087338 JNHFCHCL_00033 23285 4 Skin 0.04 protein_coding synonymous_variant LOW 283T>C Leu95Leu
M0087339 JNHFCHCL_00033 23288 4 Skin 0.04 protein_coding synonymous_variant LOW 280C>T Leu94Leu
M0087340 JNHFCHCL_00033 23289 4 Skin 0.04 protein_coding synonymous_variant LOW 279C>G Ala93Ala
M0087341 JNHFCHCL_00033 23344 3 Skin 0.03 protein_coding missense_variant MODERATE 224C>G Ala75Gly
M0087342 JNHFCHCL_00033 23345 3 Skin 0.03 protein_coding missense_variant MODERATE 223G>A Ala75Thr
M0087343 JNHFCHCL_00064 50816 3 Skin 0.03 protein_coding synonymous_variant LOW 141T>C Pro47Pro
M0087344 JNHFCHCL_00065 51126 3 Skin 0.03 protein_coding synonymous_variant LOW 570T>C Pro190Pro
M0087345 JNHFCHCL_00065 51547 3 Skin 0.03 protein_coding missense_variant MODERATE 149A>C Gln50Pro
M0087346 JNHFCHCL_00065 51687 4 Skin 0.04 protein_coding synonymous_variant LOW 9G>A Ser3Ser
M0087347 JNHFCHCL_00019 16784 7 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4067G>A None
M0087348 JNHFCHCL_00019 16786 7 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4069G>T None
M0087349 JNHFCHCL_00044 34797 5 Skin 0.05 protein_coding synonymous_variant LOW 558T>C His186His
M0087350 JNHFCHCL_00044 35091 5 Skin 0.05 protein_coding synonymous_variant LOW 852C>T Val284Val
M0087351 JNHFCHCL_00045 35786 5 Skin 0.05 protein_coding synonymous_variant LOW 684C>T Val228Val
M0087352 JNHFCHCL_00045 35895 5 Skin 0.05 protein_coding missense_variant MODERATE 793G>A Ala265Thr
M0087353 JNHFCHCL_00045 35897 5 Skin 0.05 protein_coding synonymous_variant LOW 795C>G Ala265Ala
M0087354 JNHFCHCL_00048 36798 4 Skin 0.04 protein_coding missense_variant MODERATE 128A>G Asn43Ser
M0087355 JNHFCHCL_00024 15285 3 Skin 0.03 protein_coding missense_variant MODERATE 436A>C Met146Leu
M0087356 JNHFCHCL_00024 15365 3 Skin 0.03 protein_coding synonymous_variant LOW 516C>T Pro172Pro
M0087357 JNHFCHCL_00050 39446 3 Skin 0.03 protein_coding missense_variant MODERATE 1963T>C Ser655Pro
M0087358 JNHFCHCL_00056 45545 3 Skin 0.03 protein_coding synonymous_variant LOW 87G>A Gly29Gly
M0087359 JNHFCHCL_00056 45595 3 Skin 0.03 protein_coding missense_variant MODERATE 137T>G Phe46Cys
M0087360 JNHFCHCL_00056 45765 3 Skin 0.03 protein_coding missense_variant MODERATE 307G>A Ala103Thr
M0087361 JNHFCHCL_00056 45805 3 Skin 0.03 protein_coding missense_variant MODERATE 347C>A Thr116Asn
M0087362 JNHFCHCL_00057 45984 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -187C>A None
M0087363 JNHFCHCL_00057 46272 4 Skin 0.04 protein_coding synonymous_variant LOW 102C>T His34His
M0087364 JNHFCHCL_00057 46779 4 Skin 0.04 protein_coding synonymous_variant LOW 609C>G Val203Val
M0087365 JNHFCHCL_00057 46829 4 Skin 0.04 protein_coding missense_variant MODERATE 659A>C Glu220Ala
M0087366 JNHFCHCL_00065 52886 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1191G>A None
M0087367 JNHFCHCL_00026 16190 5 Skin 0.05 protein_coding synonymous_variant LOW 102G>A Lys34Lys
M0087368 JNHFCHCL_00027 16390 5 Skin 0.05 protein_coding synonymous_variant LOW 216G>A Ser72Ser
M0087369 JNHFCHCL_00028 16919 6 Skin 0.06 protein_coding synonymous_variant LOW 543C>T Thr181Thr
M0087370 JNHFCHCL_00028 16922 6 Skin 0.06 protein_coding synonymous_variant LOW 540C>G Leu180Leu
M0087371 JNHFCHCL_00028 16925 6 Skin 0.06 protein_coding synonymous_variant LOW 537C>G Gly179Gly
M0087372 JNHFCHCL_00028 16931 6 Skin 0.06 protein_coding synonymous_variant LOW 531A>C Ile177Ile
M0087373 JNHFCHCL_00028 17035 5 Skin 0.05 protein_coding missense_variant MODERATE 427C>G Leu143Val
M0087374 JNHFCHCL_00028 17040 5 Skin 0.05 protein_coding missense_variant MODERATE 422C>T Ala141Val
M0087375 JNHFCHCL_00033 22354 4 Skin 0.04 protein_coding missense_variant MODERATE 1214C>T Ala405Val
M0087376 JNHFCHCL_00044 34972 3 Skin 0.03 protein_coding missense_variant MODERATE 733G>A Ala245Thr
M0087377 JNHFCHCL_00019 11043 3 Skin 0.03 protein_coding missense_variant MODERATE 1675T>G Ser559Ala
M0087378 JNHFCHCL_00019 11173 3 Skin 0.03 protein_coding synonymous_variant LOW 1545C>T Leu515Leu
M0087379 JNHFCHCL_00019 11221 3 Skin 0.03 protein_coding synonymous_variant LOW 1497T>C Ala499Ala
M0087380 JNHFCHCL_00019 11229 3 Skin 0.03 protein_coding missense_variant MODERATE 1489G>C Val497Leu
M0087381 JNHFCHCL_00019 11338 3 Skin 0.03 protein_coding synonymous_variant LOW 1380T>C Arg460Arg
M0087382 JNHFCHCL_00019 11581 3 Skin 0.03 protein_coding synonymous_variant LOW 1137G>A Lys379Lys
M0087383 JNHFCHCL_00019 11694 3 Skin 0.03 protein_coding missense_variant MODERATE 1024A>C Lys342Gln
M0087384 JNHFCHCL_00019 11695 3 Skin 0.03 protein_coding synonymous_variant LOW 1023T>C Thr341Thr
M0087385 JNHFCHCL_00019 11698 3 Skin 0.03 protein_coding synonymous_variant LOW 1020T>C Val340Val
M0087386 JNHFCHCL_00019 11700 3 Skin 0.03 protein_coding missense_variant MODERATE 1018G>A Val340Ile
M0087387 JNHFCHCL_00019 11707 3 Skin 0.03 protein_coding synonymous_variant LOW 1011C>T Asp337Asp
M0087388 JNHFCHCL_00019 11710 3 Skin 0.03 protein_coding synonymous_variant LOW 1008T>A Pro336Pro
M0087389 JNHFCHCL_00019 11713 3 Skin 0.03 protein_coding synonymous_variant LOW 1005T>A Gly335Gly
M0087390 JNHFCHCL_00019 11717 3 Skin 0.03 protein_coding missense_variant MODERATE 1001T>C Phe334Ser
M0087391 JNHFCHCL_00019 11718 3 Skin 0.03 protein_coding missense_variant MODERATE 1000T>G Phe334Val
M0087392 JNHFCHCL_00019 11763 3 Skin 0.03 protein_coding missense_variant MODERATE 955G>A Ala319Thr
M0087393 JNHFCHCL_00019 11764 3 Skin 0.03 protein_coding synonymous_variant LOW 954C>T Asp318Asp
M0087394 JNHFCHCL_00019 11767 3 Skin 0.03 protein_coding synonymous_variant LOW 951T>C Val317Val
M0087395 JNHFCHCL_00019 11930 3 Skin 0.03 protein_coding missense_variant MODERATE 788A>G His263Arg
M0087396 JNHFCHCL_00019 11932 3 Skin 0.03 protein_coding synonymous_variant LOW 786T>C Ala262Ala
M0087397 JNHFCHCL_00019 12583 3 Skin 0.03 protein_coding synonymous_variant LOW 135G>A Arg45Arg
M0087398 JNHFCHCL_00019 12586 3 Skin 0.03 protein_coding synonymous_variant LOW 132G>A Gly44Gly
M0087399 JNHFCHCL_00034 24836 3 Skin 0.03 protein_coding synonymous_variant LOW 1248G>A Ser416Ser
M0087400 JNHFCHCL_00032 20809 4 Skin 0.04 protein_coding synonymous_variant LOW 651T>C Thr217Thr
M0087401 JNHFCHCL_00034 25094 3 Skin 0.03 protein_coding synonymous_variant LOW 990T>A Ala330Ala
M0087402 JNHFCHCL_00034 25133 3 Skin 0.03 protein_coding synonymous_variant LOW 951T>C Asp317Asp
M0087403 JNHFCHCL_00034 25139 3 Skin 0.03 protein_coding synonymous_variant LOW 945G>C Thr315Thr
M0087404 JNHFCHCL_00034 25145 3 Skin 0.03 protein_coding synonymous_variant LOW 939T>C Arg313Arg
M0087405 JNHFCHCL_00034 25151 3 Skin 0.03 protein_coding synonymous_variant LOW 933T>C Ala311Ala
M0087406 JNHFCHCL_00034 28695 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2612T>G None
M0087407 JNHFCHCL_00034 28696 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2613A>G None
M0087408 JNHFCHCL_00034 28702 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2619A>G None
M0087409 JNHFCHCL_00034 28703 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2620C>T None
M0087410 JNHFCHCL_00034 28724 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2641G>A None
M0087411 JNHFCHCL_00039 29818 3 Skin 0.03 protein_coding synonymous_variant LOW 75A>G Lys25Lys
M0087412 JNHFCHCL_00039 30025 5 Skin 0.05 protein_coding synonymous_variant LOW 282A>G Glu94Glu
M0087413 JNHFCHCL_00039 30100 6 Skin 0.06 protein_coding missense_variant MODERATE 357C>G Asp119Glu
M0087414 JNHFCHCL_00039 30103 6 Skin 0.06 protein_coding synonymous_variant LOW 360A>G Arg120Arg
M0087415 JNHFCHCL_00042 32603 3 Skin 0.03 protein_coding synonymous_variant LOW 675C>T His225His
M0087416 JNHFCHCL_00057 46951 3 Skin 0.03 protein_coding missense_variant MODERATE 781T>C Ser261Pro
M0087417 JNHFCHCL_00057 47031 3 Skin 0.03 protein_coding synonymous_variant LOW 861G>T Val287Val
M0087418 JNHFCHCL_00057 47033 3 Skin 0.03 protein_coding missense_variant MODERATE 863A>G Asn288Ser
M0087419 JNHFCHCL_00057 47171 3 Skin 0.03 protein_coding missense_variant MODERATE 1001A>G Gln334Arg
M0087420 JNHFCHCL_00057 47232 3 Skin 0.03 protein_coding synonymous_variant LOW 1062C>T Arg354Arg
M0087421 JNHFCHCL_00057 47236 3 Skin 0.03 protein_coding missense_variant MODERATE 1066A>C Met356Leu
M0087422 JNHFCHCL_00057 47343 3 Skin 0.03 protein_coding synonymous_variant LOW 1173T>C Cys391Cys
M0087423 JNHFCHCL_00034 28823 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2740C>T None
M0087424 JNHFCHCL_00039 29905 4 Skin 0.04 protein_coding synonymous_variant LOW 162C>T Asp54Asp
M0087425 JNHFCHCL_00039 29945 3 Skin 0.03 protein_coding missense_variant MODERATE 202G>A Gly68Arg
M0087426 JNHFCHCL_00039 29946 3 Skin 0.03 protein_coding missense_variant MODERATE 203G>A Gly68Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JNHFCHCL_00032 ALT45754.1|GH184 100 4.78e-247 1 356 1 1
JNHFCHCL_00050 ALT45770.1|CBM50 100 0 1 1037 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term