Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C431
  Reference Plasmid   NZ_CP012701.1
  Reference Plasmid Size   196952
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0087429 HGLNMMEE_00011 13837 7 Skin 0.11 protein_coding missense_variant MODERATE 707T>C Val236Ala
M0087430 HGLNMMEE_00011 13859 8 Skin 0.12 protein_coding synonymous_variant LOW 729A>T Pro243Pro
M0087431 HGLNMMEE_00011 13898 8 Skin 0.12 protein_coding synonymous_variant LOW 768G>A Lys256Lys
M0087432 HGLNMMEE_00011 13934 8 Skin 0.12 protein_coding synonymous_variant LOW 804C>T Ile268Ile
M0087433 HGLNMMEE_00011 13947 8 Skin 0.12 protein_coding missense_variant MODERATE 817G>C Glu273Gln
M0087434 HGLNMMEE_00011 14112 8 Skin 0.12 protein_coding missense_variant MODERATE 982G>A Glu328Lys
M0087435 HGLNMMEE_00011 14130 9 Skin 0.14 protein_coding missense_variant MODERATE 1000G>A Gly334Ser
M0087436 HGLNMMEE_00007 14142 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4447T>C None
M0087437 HGLNMMEE_00007 14171 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4476C>A None
M0087438 HGLNMMEE_00007 14194 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4499C>T None
M0087439 HGLNMMEE_00007 14219 11 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4524T>C None
M0087440 HGLNMMEE_00007 14308 10 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4613C>A None
M0087441 HGLNMMEE_00012 14834 11 Skin 0.17 protein_coding synonymous_variant LOW 486C>T Ala162Ala
M0087442 HGLNMMEE_00012 14990 10 Skin 0.15 protein_coding synonymous_variant LOW 642A>G Pro214Pro
M0087443 HGLNMMEE_00012 15092 10 Skin 0.15 protein_coding synonymous_variant LOW 744T>C Arg248Arg
M0087444 HGLNMMEE_00012 15218 10 Skin 0.15 protein_coding synonymous_variant LOW 870A>G Gln290Gln
M0087445 HGLNMMEE_00012 15263 9 Skin 0.14 protein_coding synonymous_variant LOW 915C>T Ile305Ile
M0087446 HGLNMMEE_00012 15411 8 Skin 0.12 protein_coding missense_variant MODERATE 1063A>G Thr355Ala
M0087447 HGLNMMEE_00010 15462 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2520T>G None
M0087448 HGLNMMEE_00013 15672 11 Skin 0.17 protein_coding synonymous_variant LOW 99T>C Tyr33Tyr
M0087449 HGLNMMEE_00013 16163 10 Skin 0.15 protein_coding missense_variant MODERATE 590G>C Gly197Ala
M0087450 HGLNMMEE_00013 16206 10 Skin 0.15 protein_coding synonymous_variant LOW 633A>G Leu211Leu
M0087451 HGLNMMEE_00013 16233 4 Skin 0.06 protein_coding synonymous_variant LOW 660C>T Ala220Ala
M0087452 HGLNMMEE_00013 16654 8 Skin 0.12 protein_coding missense_variant MODERATE 1081C>G Leu361Val
M0087453 HGLNMMEE_00013 16752 3 Skin 0.05 protein_coding synonymous_variant LOW 1179G>A Arg393Arg
M0087454 HGLNMMEE_00013 16929 4 Skin 0.06 protein_coding synonymous_variant LOW 1356T>C Pro452Pro
M0087455 HGLNMMEE_00013 17127 4 Skin 0.06 protein_coding synonymous_variant LOW 1554A>G Arg518Arg
M0087456 HGLNMMEE_00013 17142 4 Skin 0.06 protein_coding synonymous_variant LOW 1569G>A Leu523Leu
M0087457 HGLNMMEE_00013 17148 4 Skin 0.06 protein_coding synonymous_variant LOW 1575A>G Ala525Ala
M0087458 HGLNMMEE_00013 17194 4 Skin 0.06 protein_coding synonymous_variant LOW 1621C>T Leu541Leu
M0087459 HGLNMMEE_00013 17199 4 Skin 0.06 protein_coding synonymous_variant LOW 1626C>T Leu542Leu
M0087460 HGLNMMEE_00013 17205 4 Skin 0.06 protein_coding synonymous_variant LOW 1632G>A Ala544Ala
M0087461 HGLNMMEE_00013 17226 4 Skin 0.06 protein_coding synonymous_variant LOW 1653C>G Arg551Arg
M0087462 HGLNMMEE_00013 17271 5 Skin 0.08 protein_coding synonymous_variant LOW 1698G>A Pro566Pro
M0087463 HGLNMMEE_00013 17280 5 Skin 0.08 protein_coding synonymous_variant LOW 1707G>A Gly569Gly
M0087464 HGLNMMEE_00013 17334 5 Skin 0.08 protein_coding synonymous_variant LOW 1761C>T Val587Val
M0087465 HGLNMMEE_00013 17400 5 Skin 0.08 protein_coding synonymous_variant LOW 1827A>G Ser609Ser
M0087466 HGLNMMEE_00013 17427 4 Skin 0.06 protein_coding synonymous_variant LOW 1854C>T Val618Val
M0087467 HGLNMMEE_00013 17430 4 Skin 0.06 protein_coding synonymous_variant LOW 1857G>C Pro619Pro
M0087468 HGLNMMEE_00013 17442 4 Skin 0.06 protein_coding synonymous_variant LOW 1869C>T Val623Val
M0087469 HGLNMMEE_00013 17472 4 Skin 0.06 protein_coding synonymous_variant LOW 1899G>C Leu633Leu
M0087470 HGLNMMEE_00013 17484 4 Skin 0.06 protein_coding synonymous_variant LOW 1911A>G Leu637Leu
M0087471 HGLNMMEE_00082 89472 4 Skin 0.06 protein_coding missense_variant MODERATE 1062T>G Asp354Glu
M0087472 HGLNMMEE_00123 136133 3 Skin 0.05 protein_coding synonymous_variant LOW 126A>G Glu42Glu
M0087473 HGLNMMEE_00123 136139 3 Skin 0.05 protein_coding synonymous_variant LOW 120C>G Arg40Arg
M0087474 HGLNMMEE_00123 136145 3 Skin 0.05 protein_coding synonymous_variant LOW 114G>C Gly38Gly
M0087475 HGLNMMEE_00123 136148 3 Skin 0.05 protein_coding synonymous_variant LOW 111G>C Gly37Gly
M0087476 HGLNMMEE_00123 136160 3 Skin 0.05 protein_coding synonymous_variant LOW 99A>C Ile33Ile
M0087477 HGLNMMEE_00123 136163 3 Skin 0.05 protein_coding synonymous_variant LOW 96C>T His32His
M0087478 HGLNMMEE_00124 136262 3 Skin 0.05 protein_coding missense_variant MODERATE 418A>G Arg140Gly
M0087479 HGLNMMEE_00124 136284 3 Skin 0.05 protein_coding missense_variant MODERATE 396A>C Lys132Asn
M0087480 HGLNMMEE_00124 136325 3 Skin 0.05 protein_coding synonymous_variant LOW 355T>C Leu119Leu
M0087481 HGLNMMEE_00124 136326 3 Skin 0.05 protein_coding synonymous_variant LOW 354G>A Pro118Pro
M0087482 HGLNMMEE_00124 136348 3 Skin 0.05 protein_coding missense_variant MODERATE 332A>G Gln111Arg
M0087483 HGLNMMEE_00124 136350 3 Skin 0.05 protein_coding synonymous_variant LOW 330A>G Glu110Glu
M0087484 HGLNMMEE_00124 136358 3 Skin 0.05 protein_coding missense_variant MODERATE 322C>T Leu108Phe
M0087485 HGLNMMEE_00124 136360 3 Skin 0.05 protein_coding missense_variant MODERATE 320T>C Leu107Pro
M0087486 HGLNMMEE_00124 136368 3 Skin 0.05 protein_coding synonymous_variant LOW 312G>C Arg104Arg
M0087487 HGLNMMEE_00124 136384 3 Skin 0.05 protein_coding missense_variant MODERATE 296G>A Arg99Lys
M0087488 HGLNMMEE_00124 136392 3 Skin 0.05 protein_coding synonymous_variant LOW 288C>T Ala96Ala
M0087489 HGLNMMEE_00124 136443 4 Skin 0.06 protein_coding synonymous_variant LOW 237G>C Ala79Ala
M0087490 HGLNMMEE_00124 136519 4 Skin 0.06 protein_coding missense_variant MODERATE 161A>C Asn54Thr
M0087491 HGLNMMEE_00124 136521 4 Skin 0.06 protein_coding synonymous_variant LOW 159C>T Leu53Leu
M0087492 HGLNMMEE_00124 136647 3 Skin 0.05 protein_coding synonymous_variant LOW 33G>A Thr11Thr
M0087493 HGLNMMEE_00124 136648 3 Skin 0.05 protein_coding missense_variant MODERATE 32C>A Thr11Lys
M0087494 HGLNMMEE_00124 136650 3 Skin 0.05 protein_coding synonymous_variant LOW 30T>C Gly10Gly
M0087495 HGLNMMEE_00124 136658 3 Skin 0.05 protein_coding missense_variant MODERATE 22G>A Ala8Thr
M0087496 HGLNMMEE_00124 136667 3 Skin 0.05 protein_coding missense_variant MODERATE 13G>A Gly5Ser
M0087497 HGLNMMEE_00119 136683 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3769G>A None
M0087498 HGLNMMEE_00125 136717 3 Skin 0.05 protein_coding synonymous_variant LOW 3072C>G Pro1024Pro
M0087499 HGLNMMEE_00125 136720 3 Skin 0.05 protein_coding synonymous_variant LOW 3069T>G Val1023Val
M0087500 HGLNMMEE_00125 136726 3 Skin 0.05 protein_coding missense_variant MODERATE 3063G>C Leu1021Phe
M0087501 HGLNMMEE_00125 136728 3 Skin 0.05 protein_coding synonymous_variant LOW 3061T>C Leu1021Leu
M0087502 HGLNMMEE_00125 136729 3 Skin 0.05 protein_coding synonymous_variant LOW 3060A>G Gln1020Gln
M0087503 HGLNMMEE_00125 136731 3 Skin 0.05 protein_coding missense_variant MODERATE 3058C>A Gln1020Lys
M0087504 HGLNMMEE_00125 136824 3 Skin 0.05 protein_coding missense_variant MODERATE 2965T>G Phe989Val
M0087505 HGLNMMEE_00125 136966 4 Skin 0.06 protein_coding synonymous_variant LOW 2823T>C Arg941Arg
M0087506 HGLNMMEE_00125 136974 4 Skin 0.06 protein_coding synonymous_variant LOW 2815C>A Arg939Arg
M0087507 HGLNMMEE_00125 137094 3 Skin 0.05 protein_coding synonymous_variant LOW 2695C>T Leu899Leu
M0087508 HGLNMMEE_00125 137169 3 Skin 0.05 protein_coding missense_variant MODERATE 2620G>A Val874Ile
M0087509 HGLNMMEE_00125 137173 3 Skin 0.05 protein_coding synonymous_variant LOW 2616C>T Asp872Asp
M0087510 HGLNMMEE_00125 137242 3 Skin 0.05 protein_coding synonymous_variant LOW 2547T>C Arg849Arg
M0087511 HGLNMMEE_00164 171949 9 Skin 0.14 protein_coding missense_variant MODERATE 8T>C Leu3Pro
M0087512 HGLNMMEE_00157 171961 10 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4392A>G None
M0087513 HGLNMMEE_00165 171981 6 Skin 0.09 protein_coding missense_variant MODERATE 617C>G Thr206Arg
M0087514 HGLNMMEE_00165 171995 10 Skin 0.15 protein_coding synonymous_variant LOW 603A>G Thr201Thr
M0087515 HGLNMMEE_00165 172016 10 Skin 0.15 protein_coding synonymous_variant LOW 582G>C Pro194Pro
M0087516 HGLNMMEE_00165 172018 10 Skin 0.15 protein_coding missense_variant MODERATE 580C>A Pro194Thr
M0087517 HGLNMMEE_00165 172037 10 Skin 0.15 protein_coding synonymous_variant LOW 561G>A Glu187Glu
M0087518 HGLNMMEE_00165 172070 10 Skin 0.15 protein_coding synonymous_variant LOW 528C>G Gly176Gly
M0087519 HGLNMMEE_00165 172211 10 Skin 0.15 protein_coding missense_variant MODERATE 387G>T Gln129His
M0087520 HGLNMMEE_00165 172214 10 Skin 0.15 protein_coding synonymous_variant LOW 384G>C Arg128Arg
M0087521 HGLNMMEE_00165 172262 10 Skin 0.15 protein_coding synonymous_variant LOW 336G>A Gly112Gly
M0087522 HGLNMMEE_00165 172268 10 Skin 0.15 protein_coding synonymous_variant LOW 330G>A Glu110Glu
M0087523 HGLNMMEE_00165 172281 10 Skin 0.15 protein_coding missense_variant MODERATE 317A>G Asn106Ser
M0087524 HGLNMMEE_00165 172284 10 Skin 0.15 protein_coding missense_variant MODERATE 314G>A Arg105Lys
M0087525 HGLNMMEE_00165 172292 10 Skin 0.15 protein_coding synonymous_variant LOW 306A>G Gly102Gly
M0087526 HGLNMMEE_00165 172331 10 Skin 0.15 protein_coding synonymous_variant LOW 267T>C Tyr89Tyr
M0087527 HGLNMMEE_00165 172373 10 Skin 0.15 protein_coding synonymous_variant LOW 225G>C Val75Val
M0087528 HGLNMMEE_00165 172422 10 Skin 0.15 protein_coding missense_variant MODERATE 176T>A Phe59Tyr
M0087529 HGLNMMEE_00165 172446 8 Skin 0.12 protein_coding missense_variant MODERATE 152C>T Ala51Val
M0087530 HGLNMMEE_00165 172487 10 Skin 0.15 protein_coding synonymous_variant LOW 111T>C Phe37Phe
M0087531 HGLNMMEE_00165 172491 10 Skin 0.15 protein_coding missense_variant MODERATE 107G>C Ser36Thr
M0087532 HGLNMMEE_00165 172568 9 Skin 0.14 protein_coding synonymous_variant LOW 30A>G Gly10Gly
M0087533 HGLNMMEE_00012 14438 9 Skin 0.14 protein_coding synonymous_variant LOW 90G>C Ala30Ala
M0087534 HGLNMMEE_00012 15167 9 Skin 0.14 protein_coding synonymous_variant LOW 819T>C Leu273Leu
M0087535 HGLNMMEE_00013 16449 6 Skin 0.09 protein_coding synonymous_variant LOW 876C>T Asp292Asp
M0087536 HGLNMMEE_00013 16806 3 Skin 0.05 protein_coding synonymous_variant LOW 1233T>C Asn411Asn
M0087537 HGLNMMEE_00164 171872 5 Skin 0.08 protein_coding missense_variant MODERATE 85G>A Asp29Asn
M0087538 HGLNMMEE_00165 172017 3 Skin 0.05 protein_coding missense_variant MODERATE 581C>A Pro194Gln
M0087539 HGLNMMEE_00013 16998 4 Skin 0.06 protein_coding synonymous_variant LOW 1425A>G Arg475Arg
M0087540 HGLNMMEE_00013 17037 4 Skin 0.06 protein_coding synonymous_variant LOW 1464G>T Ala488Ala
M0087541 HGLNMMEE_00013 17586 3 Skin 0.05 protein_coding synonymous_variant LOW 2013T>A Arg671Arg
M0087542 HGLNMMEE_00013 17598 3 Skin 0.05 protein_coding synonymous_variant LOW 2025T>G Pro675Pro
M0087543 HGLNMMEE_00013 15979 6 Skin 0.09 protein_coding missense_variant MODERATE 406C>G Gln136Glu
M0087544 HGLNMMEE_00013 15981 5 Skin 0.08 protein_coding missense_variant MODERATE 408G>T Gln136His
M0087545 HGLNMMEE_00013 16008 6 Skin 0.09 protein_coding missense_variant MODERATE 435G>C Glu145Asp
M0087546 HGLNMMEE_00013 16029 6 Skin 0.09 protein_coding synonymous_variant LOW 456C>T Leu152Leu
M0087547 HGLNMMEE_00013 16070 6 Skin 0.09 protein_coding missense_variant MODERATE 497A>G Gln166Arg
M0087548 HGLNMMEE_00099 105942 3 Skin 0.05 protein_coding missense_variant MODERATE 518T>C Val173Ala
M0087549 HGLNMMEE_00099 105952 3 Skin 0.05 protein_coding synonymous_variant LOW 528A>C Arg176Arg
M0087550 HGLNMMEE_00099 106030 3 Skin 0.05 protein_coding synonymous_variant LOW 606C>G Arg202Arg
M0087551 HGLNMMEE_00099 106042 3 Skin 0.05 protein_coding synonymous_variant LOW 618T>C Leu206Leu
M0087552 HGLNMMEE_00100 106113 3 Skin 0.05 protein_coding synonymous_variant LOW 30T>G Ala10Ala
M0087553 HGLNMMEE_00100 106116 3 Skin 0.05 protein_coding synonymous_variant LOW 33C>T Pro11Pro
M0087554 HGLNMMEE_00100 106125 3 Skin 0.05 protein_coding synonymous_variant LOW 42C>G Ala14Ala
M0087555 HGLNMMEE_00100 106139 3 Skin 0.05 protein_coding missense_variant MODERATE 56G>C Gly19Ala
M0087556 HGLNMMEE_00100 106197 3 Skin 0.05 protein_coding synonymous_variant LOW 114T>C Val38Val
M0087557 HGLNMMEE_00100 106200 3 Skin 0.05 protein_coding synonymous_variant LOW 117T>C Val39Val
M0087558 HGLNMMEE_00100 106226 3 Skin 0.05 protein_coding missense_variant MODERATE 143T>C Ile48Thr
M0087559 HGLNMMEE_00100 106246 3 Skin 0.05 protein_coding missense_variant MODERATE 163T>A Leu55Met
M0087560 HGLNMMEE_00100 106276 3 Skin 0.05 protein_coding missense_variant MODERATE 193G>C Val65Leu
M0087561 HGLNMMEE_00100 106285 3 Skin 0.05 protein_coding missense_variant MODERATE 202G>T Val68Phe
M0087562 HGLNMMEE_00101 106373 3 Skin 0.05 protein_coding synonymous_variant LOW 28T>C Leu10Leu
M0087563 HGLNMMEE_00101 106411 3 Skin 0.05 protein_coding synonymous_variant LOW 66C>G Leu22Leu
M0087564 HGLNMMEE_00101 106453 3 Skin 0.05 protein_coding synonymous_variant LOW 108T>C Gly36Gly
M0087565 HGLNMMEE_00101 106468 3 Skin 0.05 protein_coding synonymous_variant LOW 123C>T Ser41Ser
M0087566 HGLNMMEE_00101 106516 3 Skin 0.05 protein_coding synonymous_variant LOW 171A>G Leu57Leu
M0087567 HGLNMMEE_00101 106553 3 Skin 0.05 protein_coding missense_variant MODERATE 208G>A Ala70Thr
M0087568 HGLNMMEE_00101 106618 3 Skin 0.05 protein_coding synonymous_variant LOW 273G>T Leu91Leu
M0087569 HGLNMMEE_00101 106621 3 Skin 0.05 protein_coding synonymous_variant LOW 276G>A Ala92Ala
M0087570 HGLNMMEE_00101 106636 3 Skin 0.05 protein_coding synonymous_variant LOW 291A>G Glu97Glu
M0087571 HGLNMMEE_00101 106669 3 Skin 0.05 protein_coding synonymous_variant LOW 324T>G Pro108Pro
M0087572 HGLNMMEE_00101 106711 3 Skin 0.05 protein_coding synonymous_variant LOW 366C>T Gly122Gly
M0087573 HGLNMMEE_00101 106715 3 Skin 0.05 protein_coding missense_variant MODERATE 370C>T Pro124Ser
M0087574 HGLNMMEE_00101 106741 3 Skin 0.05 protein_coding synonymous_variant LOW 396C>T Asp132Asp
M0087575 HGLNMMEE_00101 106810 3 Skin 0.05 protein_coding synonymous_variant LOW 465C>T Leu155Leu
M0087576 HGLNMMEE_00101 106813 3 Skin 0.05 protein_coding synonymous_variant LOW 468G>C Leu156Leu
M0087577 HGLNMMEE_00101 106825 3 Skin 0.05 protein_coding synonymous_variant LOW 480A>G Glu160Glu
M0087578 HGLNMMEE_00101 106843 3 Skin 0.05 protein_coding synonymous_variant LOW 498G>C Leu166Leu
M0087579 HGLNMMEE_00101 106924 3 Skin 0.05 protein_coding synonymous_variant LOW 579C>G Leu193Leu
M0087580 HGLNMMEE_00101 106963 3 Skin 0.05 protein_coding synonymous_variant LOW 618A>G Ala206Ala
M0087581 HGLNMMEE_00101 106972 3 Skin 0.05 protein_coding synonymous_variant LOW 627G>C Ala209Ala
M0087582 HGLNMMEE_00101 106996 3 Skin 0.05 protein_coding synonymous_variant LOW 651A>C Ala217Ala
M0087583 HGLNMMEE_00101 106998 3 Skin 0.05 protein_coding missense_variant MODERATE 653C>G Thr218Arg
M0087584 HGLNMMEE_00101 106999 3 Skin 0.05 protein_coding synonymous_variant LOW 654G>C Thr218Thr
M0087585 HGLNMMEE_00101 107000 3 Skin 0.05 protein_coding missense_variant MODERATE 655A>G Thr219Ala
M0087586 HGLNMMEE_00101 107002 3 Skin 0.05 protein_coding synonymous_variant LOW 657C>A Thr219Thr
M0087587 HGLNMMEE_00101 107149 3 Skin 0.05 protein_coding synonymous_variant LOW 804G>T Gly268Gly
M0087588 HGLNMMEE_00101 107167 3 Skin 0.05 protein_coding synonymous_variant LOW 822T>C Ser274Ser
M0087589 HGLNMMEE_00101 107374 3 Skin 0.05 protein_coding synonymous_variant LOW 1029T>C Cys343Cys
M0087590 HGLNMMEE_00101 107381 3 Skin 0.05 protein_coding synonymous_variant LOW 1036C>T Leu346Leu
M0087591 HGLNMMEE_00019 21387 3 Skin 0.05 protein_coding missense_variant MODERATE 1192G>A Val398Ile
M0087592 HGLNMMEE_00019 21396 3 Skin 0.05 protein_coding missense_variant MODERATE 1183A>C Ser395Arg
M0087593 HGLNMMEE_00019 21400 3 Skin 0.05 protein_coding missense_variant MODERATE 1179T>A Asn393Lys
M0087594 HGLNMMEE_00019 21409 3 Skin 0.05 protein_coding synonymous_variant LOW 1170G>A Arg390Arg
M0087595 HGLNMMEE_00019 21451 3 Skin 0.05 protein_coding synonymous_variant LOW 1128A>G Leu376Leu
M0087596 HGLNMMEE_00019 22172 3 Skin 0.05 protein_coding missense_variant MODERATE 407G>T Arg136Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
HGLNMMEE_00081 Chromium (Cr) 77.3 1e-98 27 242 0.8889 0.9643 prediction
HGLNMMEE_00172 Arsenic (As) 73.9 1.5e-87 19 233 0.8651 0.9160 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HGLNMMEE_00017 AOG02746.1|GH23 94.9 1.65e-204 1 293 1 1
HGLNMMEE_00075 ALH83093.1|GT51 100 4.53e-155 1 217 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term