Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C440
  Reference Plasmid   NZ_CP013273.1
  Reference Plasmid Size   25529
  Reference Plasmid GC Content   0.35
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0164837 DLEKLEND_00003 2191 3 Gut 0.17 protein_coding synonymous_variant LOW 1183T>C Leu395Leu
M0164838 DLEKLEND_00003 2253 3 Gut 0.17 protein_coding synonymous_variant LOW 1245G>A Val415Val
M0164839 DLEKLEND_00003 2269 3 Gut 0.17 protein_coding missense_variant MODERATE 1261C>T His421Tyr
M0164840 DLEKLEND_00003 2292 3 Gut 0.17 protein_coding synonymous_variant LOW 1284A>G Lys428Lys
M0164841 DLEKLEND_00003 2314 5 Gut 0.28 protein_coding missense_variant MODERATE 1306G>A Val436Ile
M0164842 DLEKLEND_00003 2319 3 Gut 0.17 protein_coding synonymous_variant LOW 1311A>T Gly437Gly
M0164843 DLEKLEND_00003 2322 5 Gut 0.28 protein_coding synonymous_variant LOW 1314C>T Tyr438Tyr
M0164844 DLEKLEND_00003 2331 3 Gut 0.17 protein_coding synonymous_variant LOW 1323T>A Ala441Ala
M0164845 DLEKLEND_00003 2334 3 Gut 0.17 protein_coding synonymous_variant LOW 1326C>A Arg442Arg
M0164846 DLEKLEND_00003 2353 3 Gut 0.17 protein_coding synonymous_variant LOW 1345C>T Leu449Leu
M0164847 DLEKLEND_00003 2376 3 Gut 0.17 protein_coding synonymous_variant LOW 1368C>T Asp456Asp
M0164848 DLEKLEND_00003 2382 5 Gut 0.28 protein_coding synonymous_variant LOW 1374T>C Asp458Asp
M0164849 DLEKLEND_00003 2388 4 Gut 0.22 protein_coding synonymous_variant LOW 1380C>T Asp460Asp
M0164850 DLEKLEND_00003 2423 5 Gut 0.28 protein_coding missense_variant MODERATE 1415G>A Ser472Asn
M0164851 DLEKLEND_00003 2424 3 Gut 0.17 protein_coding synonymous_variant LOW 1416T>C Ser472Ser
M0164852 DLEKLEND_00003 2456 4 Gut 0.22 protein_coding missense_variant MODERATE 1448C>T Ala483Val
M0164853 DLEKLEND_00003 2531 6 Gut 0.33 protein_coding missense_variant MODERATE 1523A>G Asn508Ser
M0164854 DLEKLEND_00004 2632 5 Gut 0.28 protein_coding synonymous_variant LOW 12T>C Asn4Asn
M0164855 DLEKLEND_00004 2644 4 Gut 0.22 protein_coding synonymous_variant LOW 24T>C Val8Val
M0164856 DLEKLEND_00004 2656 5 Gut 0.28 protein_coding synonymous_variant LOW 36T>C Gly12Gly
M0164857 DLEKLEND_00004 2662 5 Gut 0.28 protein_coding synonymous_variant LOW 42T>C Tyr14Tyr
M0164858 DLEKLEND_00004 2713 5 Gut 0.28 protein_coding synonymous_variant LOW 93G>A Lys31Lys
M0164859 DLEKLEND_00004 2863 7 Gut 0.39 protein_coding synonymous_variant LOW 243G>A Lys81Lys
M0164860 DLEKLEND_00004 2867 7 Gut 0.39 protein_coding missense_variant MODERATE 247A>G Ser83Gly
M0164861 DLEKLEND_00005 2998 5 Gut 0.28 protein_coding synonymous_variant LOW 63C>T Asn21Asn
M0164862 DLEKLEND_00005 3004 4 Gut 0.22 protein_coding synonymous_variant LOW 69G>A Ala23Ala
M0164863 DLEKLEND_00003 2433 3 Gut 0.17 protein_coding synonymous_variant LOW 1425C>T Ile475Ile
M0164864 DLEKLEND_00003 2493 4 Gut 0.22 protein_coding synonymous_variant LOW 1485G>A Gln495Gln
M0164865 DLEKLEND_00004 2881 6 Gut 0.33 protein_coding synonymous_variant LOW 261T>A Arg87Arg
M0164866 DLEKLEND_00004 2890 6 Gut 0.33 protein_coding synonymous_variant LOW 270T>C Gly90Gly
M0164867 DLEKLEND_00004 2893 6 Gut 0.33 protein_coding synonymous_variant LOW 273G>A Val91Val
M0164868 DLEKLEND_00005 2959 6 Gut 0.33 protein_coding synonymous_variant LOW 24G>A Lys8Lys
M0164869 DLEKLEND_00005 2989 5 Gut 0.28 protein_coding synonymous_variant LOW 54G>T Ala18Ala
M0164870 DLEKLEND_00005 3034 3 Gut 0.17 protein_coding synonymous_variant LOW 99C>T Asn33Asn
M0164871 DLEKLEND_00005 3040 4 Gut 0.22 protein_coding synonymous_variant LOW 105T>C His35His
M0164872 DLEKLEND_00005 3097 5 Gut 0.28 protein_coding synonymous_variant LOW 162G>A Lys54Lys
M0164873 DLEKLEND_00005 3109 6 Gut 0.33 protein_coding synonymous_variant LOW 174T>G Gly58Gly
M0164874 DLEKLEND_00005 3274 4 Gut 0.22 protein_coding synonymous_variant LOW 339T>C Asp113Asp
M0164875 DLEKLEND_00005 3338 7 Gut 0.39 protein_coding missense_variant MODERATE 403A>G Ile135Val
M0164876 DLEKLEND_00005 3361 9 Gut 0.50 protein_coding synonymous_variant LOW 426G>A Glu142Glu
M0164877 DLEKLEND_00005 3364 9 Gut 0.50 protein_coding synonymous_variant LOW 429T>C Asp143Asp
M0164878 DLEKLEND_00005 3388 4 Gut 0.22 protein_coding synonymous_variant LOW 453A>G Leu151Leu
M0164879 DLEKLEND_00005 3394 4 Gut 0.22 protein_coding synonymous_variant LOW 459T>C Ser153Ser
M0164880 DLEKLEND_00005 3469 10 Gut 0.56 protein_coding synonymous_variant LOW 534G>A Thr178Thr
M0164881 DLEKLEND_00005 3472 8 Gut 0.44 protein_coding synonymous_variant LOW 537A>G Gln179Gln
M0164882 DLEKLEND_00005 3490 6 Gut 0.33 protein_coding synonymous_variant LOW 555C>T Ala185Ala
M0164883 DLEKLEND_00005 3491 6 Gut 0.33 protein_coding synonymous_variant LOW 556T>C Leu186Leu
M0164884 DLEKLEND_00005 3494 6 Gut 0.33 protein_coding missense_variant MODERATE 559A>G Thr187Ala
M0164885 DLEKLEND_00005 3532 9 Gut 0.50 protein_coding synonymous_variant LOW 597T>C Asn199Asn
M0164886 DLEKLEND_00005 3862 3 Gut 0.17 protein_coding synonymous_variant LOW 927T>C Ile309Ile
M0164887 DLEKLEND_00005 3883 10 Gut 0.56 protein_coding synonymous_variant LOW 948C>T Ile316Ile
M0164888 DLEKLEND_00005 3940 6 Gut 0.33 protein_coding synonymous_variant LOW 1005C>T Ile335Ile
M0164889 DLEKLEND_00005 3959 6 Gut 0.33 protein_coding missense_variant MODERATE 1024G>A Val342Ile
M0164890 DLEKLEND_00005 3973 6 Gut 0.33 protein_coding synonymous_variant LOW 1038C>T Asn346Asn
M0164891 DLEKLEND_00005 4011 6 Gut 0.33 protein_coding missense_variant MODERATE 1076A>G Asn359Ser
M0164892 DLEKLEND_00006 4084 7 Gut 0.39 protein_coding upstream_gene_variant MODIFIER -69G>A None
M0164893 DLEKLEND_00006 4097 7 Gut 0.39 protein_coding upstream_gene_variant MODIFIER -56T>G None
M0164894 DLEKLEND_00006 4110 4 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -43C>T None
M0164895 DLEKLEND_00006 4116 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -37T>G None
M0164896 DLEKLEND_00006 4137 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -16T>C None
M0164897 DLEKLEND_00006 4139 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -14G>T None
M0164898 DLEKLEND_00006 4143 4 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -10C>T None
M0164899 DLEKLEND_00006 4150 7 Gut 0.39 protein_coding upstream_gene_variant MODIFIER -3G>A None
M0164900 DLEKLEND_00006 4158 7 Gut 0.39 protein_coding synonymous_variant LOW 6A>T Thr2Thr
M0164901 DLEKLEND_00006 4167 6 Gut 0.33 protein_coding synonymous_variant LOW 15C>T Cys5Cys
M0164902 DLEKLEND_00006 4209 8 Gut 0.44 protein_coding synonymous_variant LOW 57C>T His19His
M0164903 DLEKLEND_00006 4212 7 Gut 0.39 protein_coding synonymous_variant LOW 60A>T Gly20Gly
M0164904 DLEKLEND_00006 4248 6 Gut 0.33 protein_coding synonymous_variant LOW 96C>T Val32Val
M0164905 DLEKLEND_00006 4296 7 Gut 0.39 protein_coding synonymous_variant LOW 144C>T Tyr48Tyr
M0164906 DLEKLEND_00006 4320 9 Gut 0.50 protein_coding synonymous_variant LOW 168A>G Lys56Lys
M0164907 DLEKLEND_00006 4326 6 Gut 0.33 protein_coding synonymous_variant LOW 174G>T Val58Val
M0164908 DLEKLEND_00006 4368 5 Gut 0.28 protein_coding synonymous_variant LOW 216T>C Ile72Ile
M0164909 DLEKLEND_00006 4378 7 Gut 0.39 protein_coding missense_variant MODERATE 226G>A Glu76Lys
M0164910 DLEKLEND_00006 4379 7 Gut 0.39 protein_coding missense_variant MODERATE 227A>C Glu76Ala
M0164911 DLEKLEND_00006 4380 7 Gut 0.39 protein_coding missense_variant MODERATE 228G>T Glu76Asp
M0164912 DLEKLEND_00006 4384 7 Gut 0.39 protein_coding missense_variant MODERATE 232A>G Asn78Asp
M0164913 DLEKLEND_00006 4389 7 Gut 0.39 protein_coding missense_variant MODERATE 237A>T Glu79Asp
M0164914 DLEKLEND_00006 4395 9 Gut 0.50 protein_coding synonymous_variant LOW 243T>C Asp81Asp
M0164915 DLEKLEND_00006 4452 10 Gut 0.56 protein_coding synonymous_variant LOW 300T>A Ala100Ala
M0164916 DLEKLEND_00006 4467 10 Gut 0.56 protein_coding synonymous_variant LOW 315G>A Lys105Lys
M0164917 DLEKLEND_00006 4482 10 Gut 0.56 protein_coding synonymous_variant LOW 330A>C Ala110Ala
M0164918 DLEKLEND_00006 4485 10 Gut 0.56 protein_coding synonymous_variant LOW 333G>A Leu111Leu
M0164919 DLEKLEND_00006 4497 5 Gut 0.28 protein_coding synonymous_variant LOW 345C>T Leu115Leu
M0164920 DLEKLEND_00006 4509 10 Gut 0.56 protein_coding synonymous_variant LOW 357T>C Arg119Arg
M0164921 DLEKLEND_00007 4669 10 Gut 0.56 protein_coding synonymous_variant LOW 102T>C Asn34Asn
M0164922 DLEKLEND_00007 4687 3 Gut 0.17 protein_coding synonymous_variant LOW 120A>T Pro40Pro
M0164923 DLEKLEND_00007 4702 10 Gut 0.56 protein_coding synonymous_variant LOW 135G>A Leu45Leu
M0164924 DLEKLEND_00007 4750 8 Gut 0.44 protein_coding synonymous_variant LOW 183T>C Asn61Asn
M0164925 DLEKLEND_00007 4788 9 Gut 0.50 protein_coding missense_variant MODERATE 221A>C Asp74Ala
M0164926 DLEKLEND_00007 4887 8 Gut 0.44 protein_coding missense_variant MODERATE 320G>A Ser107Asn
M0164927 DLEKLEND_00007 4957 5 Gut 0.28 protein_coding missense_variant MODERATE 390T>A Asp130Glu
M0164928 DLEKLEND_00007 4971 5 Gut 0.28 protein_coding missense_variant MODERATE 404T>C Val135Ala
M0164929 DLEKLEND_00007 5007 4 Gut 0.22 protein_coding missense_variant MODERATE 440G>A Arg147His
M0164930 DLEKLEND_00007 5066 3 Gut 0.17 protein_coding missense_variant MODERATE 499A>C Asn167His
M0164931 DLEKLEND_00007 5068 3 Gut 0.17 protein_coding missense_variant MODERATE 501T>A Asn167Lys
M0164932 DLEKLEND_00007 5069 3 Gut 0.17 protein_coding missense_variant MODERATE 502C>G Leu168Val
M0164933 DLEKLEND_00007 5093 3 Gut 0.17 protein_coding missense_variant MODERATE 526G>A Val176Ile
M0164934 DLEKLEND_00007 5094 3 Gut 0.17 protein_coding missense_variant MODERATE 527T>C Val176Ala
M0164935 DLEKLEND_00007 5108 3 Gut 0.17 protein_coding missense_variant MODERATE 541G>A Ala181Thr
M0164936 DLEKLEND_00007 5110 3 Gut 0.17 protein_coding synonymous_variant LOW 543T>A Ala181Ala
M0164937 DLEKLEND_00005 3508 4 Gut 0.22 protein_coding synonymous_variant LOW 573C>T Asn191Asn
M0164938 DLEKLEND_00005 3541 6 Gut 0.33 protein_coding synonymous_variant LOW 606A>G Thr202Thr
M0164939 DLEKLEND_00005 3589 6 Gut 0.33 protein_coding synonymous_variant LOW 654C>T Ser218Ser
M0164940 DLEKLEND_00005 3640 9 Gut 0.50 protein_coding synonymous_variant LOW 705C>T Gly235Gly
M0164941 DLEKLEND_00005 3703 5 Gut 0.28 protein_coding synonymous_variant LOW 768T>C Tyr256Tyr
M0164942 DLEKLEND_00005 3770 3 Gut 0.17 protein_coding missense_variant MODERATE 835A>G Asn279Asp
M0164943 DLEKLEND_00005 3771 3 Gut 0.17 protein_coding missense_variant MODERATE 836A>G Asn279Ser
M0164944 DLEKLEND_00005 3782 4 Gut 0.22 protein_coding missense_variant MODERATE 847G>A Val283Ile
M0164945 DLEKLEND_00005 3785 6 Gut 0.33 protein_coding missense_variant MODERATE 850G>A Val284Ile
M0164946 DLEKLEND_00005 3786 4 Gut 0.22 protein_coding missense_variant MODERATE 851T>A Val284Asp
M0164947 DLEKLEND_00005 3874 5 Gut 0.28 protein_coding synonymous_variant LOW 939C>T His313His
M0164948 DLEKLEND_00006 4070 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -83A>G None
M0164949 DLEKLEND_00006 4251 4 Gut 0.22 protein_coding synonymous_variant LOW 99T>C Tyr33Tyr
M0164950 DLEKLEND_00006 4257 6 Gut 0.33 protein_coding synonymous_variant LOW 105C>T Asp35Asp
M0164951 DLEKLEND_00006 4260 3 Gut 0.17 protein_coding synonymous_variant LOW 108A>G Leu36Leu
M0164952 DLEKLEND_00007 4597 7 Gut 0.39 protein_coding synonymous_variant LOW 30G>A Gln10Gln
M0164953 DLEKLEND_00007 4600 4 Gut 0.22 protein_coding synonymous_variant LOW 33C>T Asn11Asn
M0164954 DLEKLEND_00006 4224 5 Gut 0.28 protein_coding synonymous_variant LOW 72T>C Ser24Ser
M0164955 DLEKLEND_00006 4233 4 Gut 0.22 protein_coding synonymous_variant LOW 81T>C Ile27Ile
M0164956 DLEKLEND_00007 4888 6 Gut 0.33 protein_coding synonymous_variant LOW 321C>T Ser107Ser
M0164957 DLEKLEND_00004 2683 5 Gut 0.28 protein_coding synonymous_variant LOW 63T>A Ala21Ala
M0164958 DLEKLEND_00004 2710 4 Gut 0.22 protein_coding synonymous_variant LOW 90T>C Asp30Asp
M0164959 DLEKLEND_00005 3049 3 Gut 0.17 protein_coding synonymous_variant LOW 114C>T Ile38Ile
M0164960 DLEKLEND_00005 3085 3 Gut 0.17 protein_coding synonymous_variant LOW 150T>A Val50Val
M0164961 DLEKLEND_00005 3136 4 Gut 0.22 protein_coding synonymous_variant LOW 201T>C Gly67Gly
M0164962 DLEKLEND_00005 3142 3 Gut 0.17 protein_coding synonymous_variant LOW 207C>T Asp69Asp
M0164963 DLEKLEND_00005 3148 3 Gut 0.17 protein_coding synonymous_variant LOW 213C>T Asp71Asp
M0164964 DLEKLEND_00005 3151 3 Gut 0.17 protein_coding synonymous_variant LOW 216G>A Glu72Glu
M0164965 DLEKLEND_00005 3154 3 Gut 0.17 protein_coding synonymous_variant LOW 219T>C Val73Val
M0164966 DLEKLEND_00005 3157 3 Gut 0.17 protein_coding synonymous_variant LOW 222A>C Leu74Leu
M0164967 DLEKLEND_00005 3160 3 Gut 0.17 protein_coding synonymous_variant LOW 225C>T Asn75Asn
M0164968 DLEKLEND_00005 3259 4 Gut 0.22 protein_coding synonymous_variant LOW 324T>C Asp108Asp
M0164969 DLEKLEND_00005 3268 3 Gut 0.17 protein_coding synonymous_variant LOW 333A>G Thr111Thr
M0164970 DLEKLEND_00005 3271 5 Gut 0.28 protein_coding synonymous_variant LOW 336A>C Gly112Gly
M0164971 DLEKLEND_00005 3284 5 Gut 0.28 protein_coding synonymous_variant LOW 349C>T Leu117Leu
M0164972 DLEKLEND_00005 3289 3 Gut 0.17 protein_coding synonymous_variant LOW 354A>G Leu118Leu
M0164973 DLEKLEND_00005 3298 3 Gut 0.17 protein_coding synonymous_variant LOW 363C>T Asn121Asn
M0164974 DLEKLEND_00005 3886 3 Gut 0.17 protein_coding synonymous_variant LOW 951C>T Asn317Asn
M0164975 DLEKLEND_00005 3888 4 Gut 0.22 protein_coding missense_variant MODERATE 953C>G Ala318Gly
M0164976 DLEKLEND_00005 3946 6 Gut 0.33 protein_coding synonymous_variant LOW 1011C>T Gly337Gly
M0164977 DLEKLEND_00005 3958 5 Gut 0.28 protein_coding synonymous_variant LOW 1023T>C Tyr341Tyr
M0164978 DLEKLEND_00005 3961 5 Gut 0.28 protein_coding synonymous_variant LOW 1026C>A Val342Val
M0164979 DLEKLEND_00005 3962 4 Gut 0.22 protein_coding missense_variant MODERATE 1027A>G Thr343Ala
M0164980 DLEKLEND_00005 3964 5 Gut 0.28 protein_coding synonymous_variant LOW 1029A>T Thr343Thr
M0164981 DLEKLEND_00005 3991 3 Gut 0.17 protein_coding synonymous_variant LOW 1056C>T Asn352Asn
M0164982 DLEKLEND_00005 4000 4 Gut 0.22 protein_coding synonymous_variant LOW 1065T>C Asp355Asp
M0164983 DLEKLEND_00005 4001 3 Gut 0.17 protein_coding synonymous_variant LOW 1066T>C Leu356Leu
M0164984 DLEKLEND_00007 4993 3 Gut 0.17 protein_coding synonymous_variant LOW 426G>A Val142Val
M0164985 DLEKLEND_00007 5020 3 Gut 0.17 protein_coding synonymous_variant LOW 453C>T Val151Val
M0164986 DLEKLEND_00007 5023 3 Gut 0.17 protein_coding synonymous_variant LOW 456C>T Gly152Gly
M0164987 DLEKLEND_00007 5032 3 Gut 0.17 protein_coding synonymous_variant LOW 465C>T Leu155Leu
M0164988 DLEKLEND_00006 4264 3 Gut 0.17 protein_coding missense_variant MODERATE 112T>A Ser38Thr
M0164989 DLEKLEND_00006 4317 3 Gut 0.17 protein_coding synonymous_variant LOW 165C>T Asn55Asn
M0164990 DLEKLEND_00006 4335 3 Gut 0.17 protein_coding synonymous_variant LOW 183A>T Gly61Gly
M0164991 DLEKLEND_00006 4557 4 Gut 0.22 protein_coding synonymous_variant LOW 405T>C Ile135Ile
M0164992 DLEKLEND_00007 4924 3 Gut 0.17 protein_coding synonymous_variant LOW 357T>C Asp119Asp
M0164993 DLEKLEND_00005 3595 3 Gut 0.17 protein_coding synonymous_variant LOW 660A>G Leu220Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
DLEKLEND_00005 1.W.2.1.9 94.1 7.1e-198 1 372 1.0000 0.9841 1 Channels/Pores 1.W Phage Portal Protein Subclass 1.W.2 The Phage Portal Protein 2 (PPP2) Family
DLEKLEND_00020 1.E.13.1.2 91.5 1.2e-53 1 117 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.13 The Firmicute phage φU53 Holin (φU53 Holin) Family