Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C442
  Reference Plasmid   NZ_CP014235.1
  Reference Plasmid Size   81455
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0087846 FFDJGNGM_00039 41751 3 Skin 0.07 protein_coding missense_variant MODERATE 2395A>G Asn799Asp
M0087847 FFDJGNGM_00039 41840 3 Skin 0.07 protein_coding missense_variant MODERATE 2306A>G Gln769Arg
M0087848 FFDJGNGM_00039 42632 4 Skin 0.09 protein_coding missense_variant MODERATE 1514C>A Pro505Gln
M0087849 FFDJGNGM_00039 42895 3 Skin 0.07 protein_coding synonymous_variant LOW 1251T>C Asn417Asn
M0087850 FFDJGNGM_00039 42936 3 Skin 0.07 protein_coding missense_variant MODERATE 1210A>G Asn404Asp
M0087851 FFDJGNGM_00039 42955 3 Skin 0.07 protein_coding synonymous_variant LOW 1191G>A Ala397Ala
M0087852 FFDJGNGM_00039 43121 4 Skin 0.09 protein_coding missense_variant MODERATE 1025A>C Gln342Pro
M0087853 FFDJGNGM_00039 43131 4 Skin 0.09 protein_coding missense_variant MODERATE 1015G>A Glu339Lys
M0087854 FFDJGNGM_00039 43138 4 Skin 0.09 protein_coding synonymous_variant LOW 1008A>G Ser336Ser
M0087855 FFDJGNGM_00039 43292 4 Skin 0.09 protein_coding missense_variant MODERATE 854C>A Pro285Gln
M0087856 FFDJGNGM_00039 43444 3 Skin 0.07 protein_coding synonymous_variant LOW 702C>T Phe234Phe
M0087857 FFDJGNGM_00039 43492 3 Skin 0.07 protein_coding synonymous_variant LOW 654C>T Asp218Asp
M0087858 FFDJGNGM_00039 43776 5 Skin 0.11 protein_coding missense_variant MODERATE 370A>G Ile124Val
M0087859 FFDJGNGM_00039 43783 5 Skin 0.11 protein_coding synonymous_variant LOW 363T>C Val121Val
M0087860 FFDJGNGM_00039 43789 5 Skin 0.11 protein_coding synonymous_variant LOW 357T>G Pro119Pro
M0087861 FFDJGNGM_00039 43825 4 Skin 0.09 protein_coding synonymous_variant LOW 321G>C Thr107Thr
M0087862 FFDJGNGM_00039 43857 4 Skin 0.09 protein_coding missense_variant MODERATE 289T>C Tyr97His
M0087863 FFDJGNGM_00039 43936 4 Skin 0.09 protein_coding synonymous_variant LOW 210G>A Glu70Glu
M0087864 FFDJGNGM_00039 44005 4 Skin 0.09 protein_coding synonymous_variant LOW 141G>A Glu47Glu
M0087865 FFDJGNGM_00039 44013 4 Skin 0.09 protein_coding missense_variant MODERATE 133C>G Pro45Ala
M0087866 FFDJGNGM_00039 44020 4 Skin 0.09 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0087867 FFDJGNGM_00039 44023 4 Skin 0.09 protein_coding synonymous_variant LOW 123G>A Leu41Leu
M0087868 FFDJGNGM_00039 44025 4 Skin 0.09 protein_coding synonymous_variant LOW 121T>C Leu41Leu
M0087869 FFDJGNGM_00039 44028 4 Skin 0.09 protein_coding missense_variant MODERATE 118G>T Val40Leu
M0087870 FFDJGNGM_00039 44089 4 Skin 0.09 protein_coding synonymous_variant LOW 57G>T Gly19Gly
M0087871 FFDJGNGM_00039 44095 4 Skin 0.09 protein_coding synonymous_variant LOW 51A>C Thr17Thr
M0087872 FFDJGNGM_00039 44119 4 Skin 0.09 protein_coding synonymous_variant LOW 27T>G Gly9Gly
M0087873 FFDJGNGM_00039 44134 4 Skin 0.09 protein_coding synonymous_variant LOW 12A>G Lys4Lys
M0087874 FFDJGNGM_00040 44261 5 Skin 0.11 protein_coding synonymous_variant LOW 291A>G Arg97Arg
M0087875 FFDJGNGM_00040 44361 5 Skin 0.11 protein_coding missense_variant MODERATE 191A>G His64Arg
M0087876 FFDJGNGM_00040 44381 5 Skin 0.11 protein_coding synonymous_variant LOW 171C>T His57His
M0087877 FFDJGNGM_00040 44442 4 Skin 0.09 protein_coding missense_variant MODERATE 110A>G Lys37Arg
M0087878 FFDJGNGM_00040 44444 4 Skin 0.09 protein_coding synonymous_variant LOW 108C>A Pro36Pro
M0087879 FFDJGNGM_00040 44447 4 Skin 0.09 protein_coding synonymous_variant LOW 105T>C Asp35Asp
M0087880 FFDJGNGM_00040 44453 4 Skin 0.09 protein_coding missense_variant MODERATE 99T>G Ser33Arg
M0087881 FFDJGNGM_00040 44454 4 Skin 0.09 protein_coding missense_variant MODERATE 98G>C Ser33Thr
M0087882 FFDJGNGM_00040 44456 4 Skin 0.09 protein_coding synonymous_variant LOW 96A>G Pro32Pro
M0087883 FFDJGNGM_00040 44460 5 Skin 0.11 protein_coding missense_variant MODERATE 92A>T Tyr31Phe
M0087884 FFDJGNGM_00040 44465 4 Skin 0.09 protein_coding synonymous_variant LOW 87C>G Arg29Arg
M0087885 FFDJGNGM_00040 44525 3 Skin 0.07 protein_coding missense_variant MODERATE 27G>A Met9Ile
M0087886 FFDJGNGM_00049 52063 6 Skin 0.13 protein_coding missense_variant MODERATE 1441C>G Pro481Ala
M0087887 FFDJGNGM_00049 52147 6 Skin 0.13 protein_coding missense_variant MODERATE 1357C>T Pro453Ser
M0087888 FFDJGNGM_00049 52586 6 Skin 0.13 protein_coding synonymous_variant LOW 918C>T Ala306Ala
M0087889 FFDJGNGM_00049 52988 3 Skin 0.07 protein_coding synonymous_variant LOW 516C>T Ala172Ala
M0087890 FFDJGNGM_00049 53023 6 Skin 0.13 protein_coding missense_variant MODERATE 481A>G Ser161Gly
M0087891 FFDJGNGM_00049 53044 5 Skin 0.11 protein_coding missense_variant MODERATE 460A>G Ile154Val
M0087892 FFDJGNGM_00049 53144 5 Skin 0.11 protein_coding synonymous_variant LOW 360G>A Thr120Thr
M0087893 FFDJGNGM_00049 53234 6 Skin 0.13 protein_coding synonymous_variant LOW 270T>C Asn90Asn
M0087894 FFDJGNGM_00049 53311 5 Skin 0.11 protein_coding missense_variant MODERATE 193T>G Phe65Val
M0087895 FFDJGNGM_00049 53366 5 Skin 0.11 protein_coding synonymous_variant LOW 138G>A Lys46Lys
M0087896 FFDJGNGM_00049 53388 4 Skin 0.09 protein_coding missense_variant MODERATE 116G>A Arg39Gln
M0087897 FFDJGNGM_00049 53487 3 Skin 0.07 protein_coding missense_variant MODERATE 17C>G Ala6Gly
M0087898 FFDJGNGM_00050 53558 3 Skin 0.07 protein_coding missense_variant MODERATE 737T>C Val246Ala
M0087899 FFDJGNGM_00050 53572 3 Skin 0.07 protein_coding synonymous_variant LOW 723A>G Gln241Gln
M0087900 FFDJGNGM_00050 53679 3 Skin 0.07 protein_coding missense_variant MODERATE 616G>A Gly206Ser
M0087901 FFDJGNGM_00050 53684 3 Skin 0.07 protein_coding missense_variant MODERATE 611T>C Ile204Thr
M0087902 FFDJGNGM_00050 53713 3 Skin 0.07 protein_coding missense_variant MODERATE 582A>C Lys194Asn
M0087903 FFDJGNGM_00050 53714 3 Skin 0.07 protein_coding missense_variant MODERATE 581A>G Lys194Arg
M0087904 FFDJGNGM_00050 53716 3 Skin 0.07 protein_coding synonymous_variant LOW 579T>C Ala193Ala
M0087905 FFDJGNGM_00050 53902 3 Skin 0.07 protein_coding synonymous_variant LOW 393A>G Val131Val
M0087906 FFDJGNGM_00050 53974 3 Skin 0.07 protein_coding synonymous_variant LOW 321C>G Gly107Gly
M0087907 FFDJGNGM_00050 54221 3 Skin 0.07 protein_coding missense_variant MODERATE 74G>T Trp25Leu
M0087908 FFDJGNGM_00049 52505 4 Skin 0.09 protein_coding synonymous_variant LOW 999G>A Leu333Leu
M0087909 FFDJGNGM_00049 52511 4 Skin 0.09 protein_coding synonymous_variant LOW 993C>T Leu331Leu
M0087910 FFDJGNGM_00049 52859 5 Skin 0.11 protein_coding synonymous_variant LOW 645T>C Thr215Thr
M0087911 FFDJGNGM_00049 52886 5 Skin 0.11 protein_coding missense_variant MODERATE 618T>A Asp206Glu
M0087912 FFDJGNGM_00002 1446 3 Skin 0.07 protein_coding synonymous_variant LOW 297A>G Glu99Glu
M0087913 FFDJGNGM_00002 1722 3 Skin 0.07 protein_coding synonymous_variant LOW 21C>G Thr7Thr
M0087914 FFDJGNGM_00002 1739 3 Skin 0.07 protein_coding missense_variant MODERATE 4T>C Ser2Pro
M0087915 FFDJGNGM_00001 1961 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1767T>C None
M0087916 FFDJGNGM_00003 3060 3 Skin 0.07 protein_coding synonymous_variant LOW 510A>G Gln170Gln
M0087917 FFDJGNGM_00001 3449 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3255T>C None
M0087918 FFDJGNGM_00042 45728 3 Skin 0.07 protein_coding synonymous_variant LOW 249G>A Glu83Glu
M0087919 FFDJGNGM_00042 45925 3 Skin 0.07 protein_coding stop_gained HIGH 52G>T Glu18*
M0087920 FFDJGNGM_00042 45932 3 Skin 0.07 protein_coding synonymous_variant LOW 45T>C Asp15Asp
M0087921 FFDJGNGM_00042 45935 3 Skin 0.07 protein_coding synonymous_variant LOW 42C>T Leu14Leu
M0087922 FFDJGNGM_00042 45943 3 Skin 0.07 protein_coding missense_variant MODERATE 34A>G Asn12Asp
M0087923 FFDJGNGM_00038 45990 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4573T>A None
M0087924 FFDJGNGM_00038 45991 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4574A>G None
M0087925 FFDJGNGM_00037 44734 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4490C>T None
M0087926 FFDJGNGM_00037 44815 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4571T>C None
M0087927 FFDJGNGM_00037 44873 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4629T>C None
M0087928 FFDJGNGM_00037 44876 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4632A>C None
M0087929 FFDJGNGM_00037 44881 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4637A>G None
M0087930 FFDJGNGM_00037 44882 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4638A>G None
M0087931 FFDJGNGM_00037 44883 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4639T>C None
M0087932 FFDJGNGM_00037 44885 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4641G>T None
M0087933 FFDJGNGM_00037 44897 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4653C>T None
M0087934 FFDJGNGM_00037 44906 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4662T>A None
M0087935 FFDJGNGM_00037 44913 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4669C>T None
M0087936 FFDJGNGM_00037 44920 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4676T>C None
M0087937 FFDJGNGM_00037 45028 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4784C>T None
M0087938 FFDJGNGM_00037 45081 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4837C>T None
M0087939 FFDJGNGM_00058 59251 3 Skin 0.07 protein_coding synonymous_variant LOW 219T>C Val73Val
M0087940 FFDJGNGM_00058 59296 3 Skin 0.07 protein_coding synonymous_variant LOW 264A>G Lys88Lys
M0087941 FFDJGNGM_00058 59342 3 Skin 0.07 protein_coding synonymous_variant LOW 310T>C Leu104Leu
M0087942 FFDJGNGM_00051 59379 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4886T>C None
M0087943 FFDJGNGM_00051 59424 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4931T>C None
M0087944 FFDJGNGM_00059 59907 3 Skin 0.07 protein_coding synonymous_variant LOW 1158A>G Thr386Thr
M0087945 FFDJGNGM_00033 35758 3 Skin 0.07 protein_coding missense_variant MODERATE 568G>A Ala190Thr
M0087946 FFDJGNGM_00033 35988 3 Skin 0.07 protein_coding missense_variant MODERATE 338G>T Arg113Met
M0087947 FFDJGNGM_00033 36218 3 Skin 0.07 protein_coding synonymous_variant LOW 108A>G Lys36Lys
M0087948 FFDJGNGM_00033 36227 3 Skin 0.07 protein_coding synonymous_variant LOW 99A>G Leu33Leu
M0087949 FFDJGNGM_00032 36400 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1590A>C None
M0087950 FFDJGNGM_00034 36754 3 Skin 0.07 protein_coding synonymous_variant LOW 1035T>C Pro345Pro
M0087951 FFDJGNGM_00034 36835 3 Skin 0.07 protein_coding missense_variant MODERATE 954T>A Asp318Glu
M0087952 FFDJGNGM_00052 54920 3 Skin 0.07 protein_coding synonymous_variant LOW 609T>C Thr203Thr
M0087953 FFDJGNGM_00052 55342 3 Skin 0.07 protein_coding missense_variant MODERATE 187G>A Val63Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FFDJGNGM_00062 AME02456.1|CE4 100 3.02e-255 1 330 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term