Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C449
  Reference Plasmid   NZ_CP016284.1
  Reference Plasmid Size   58936
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0088119 OILOKOMM_00044 46605 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2466C>T None
M0088120 OILOKOMM_00044 46617 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2478T>C None
M0088121 OILOKOMM_00044 46668 11 Skin 0.73 protein_coding upstream_gene_variant MODIFIER -2529G>A None
M0088122 OILOKOMM_00047 46825 13 Skin 0.87 protein_coding missense_variant MODERATE 895T>C Phe299Leu
M0088123 OILOKOMM_00047 47072 6 Skin 0.40 protein_coding synonymous_variant LOW 648C>T Arg216Arg
M0088124 OILOKOMM_00047 47165 8 Skin 0.53 protein_coding synonymous_variant LOW 555C>G Ala185Ala
M0088125 OILOKOMM_00047 47244 12 Skin 0.80 protein_coding missense_variant MODERATE 476G>T Arg159Leu
M0088126 OILOKOMM_00047 47300 12 Skin 0.80 protein_coding synonymous_variant LOW 420A>T Thr140Thr
M0088127 OILOKOMM_00047 47354 4 Skin 0.27 protein_coding missense_variant MODERATE 366G>C Glu122Asp
M0088128 OILOKOMM_00047 47399 11 Skin 0.73 protein_coding synonymous_variant LOW 321T>C Ser107Ser
M0088129 OILOKOMM_00047 47472 8 Skin 0.53 protein_coding missense_variant MODERATE 248G>C Gly83Ala
M0088130 OILOKOMM_00047 47632 3 Skin 0.20 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0088131 OILOKOMM_00044 47738 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -3599C>G None
M0088132 OILOKOMM_00044 47768 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -3629C>A None
M0088133 OILOKOMM_00048 47857 8 Skin 0.53 protein_coding missense_variant MODERATE 73G>C Val25Leu
M0088134 OILOKOMM_00048 47976 8 Skin 0.53 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0088135 OILOKOMM_00044 46595 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2456C>G None
M0088136 OILOKOMM_00044 46661 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2522T>C None
M0088137 OILOKOMM_00044 46697 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2558T>C None
M0088138 OILOKOMM_00044 46698 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2559G>A None
M0088139 OILOKOMM_00044 46704 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2565C>T None
M0088140 OILOKOMM_00044 46709 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2570C>G None
M0088141 OILOKOMM_00047 47372 11 Skin 0.73 protein_coding synonymous_variant LOW 348A>G Ser116Ser
M0088142 OILOKOMM_00047 47416 10 Skin 0.67 protein_coding missense_variant MODERATE 304C>A His102Asn
M0088143 OILOKOMM_00047 47420 10 Skin 0.67 protein_coding synonymous_variant LOW 300G>T Ala100Ala
M0088144 OILOKOMM_00044 48189 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4050C>G None
M0088145 OILOKOMM_00049 48206 3 Skin 0.20 protein_coding missense_variant MODERATE 4C>T Pro2Ser
M0088146 OILOKOMM_00049 48288 3 Skin 0.20 protein_coding missense_variant MODERATE 86T>C Ile29Thr
M0088147 OILOKOMM_00049 48292 3 Skin 0.20 protein_coding synonymous_variant LOW 90G>A Gly30Gly
M0088148 OILOKOMM_00049 48379 4 Skin 0.27 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0088149 OILOKOMM_00049 48472 3 Skin 0.20 protein_coding synonymous_variant LOW 270A>C Ala90Ala
M0088150 OILOKOMM_00049 48649 3 Skin 0.20 protein_coding synonymous_variant LOW 447C>T Ala149Ala
M0088151 OILOKOMM_00049 48681 3 Skin 0.20 protein_coding missense_variant MODERATE 479A>C Lys160Thr
M0088152 OILOKOMM_00049 48688 3 Skin 0.20 protein_coding synonymous_variant LOW 486C>T Phe162Phe
M0088153 OILOKOMM_00049 48703 3 Skin 0.20 protein_coding synonymous_variant LOW 501G>C Val167Val
M0088154 OILOKOMM_00049 48940 4 Skin 0.27 protein_coding synonymous_variant LOW 738G>A Ala246Ala
M0088155 OILOKOMM_00044 46454 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2315G>T None
M0088156 OILOKOMM_00044 46495 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2356T>C None
M0088157 OILOKOMM_00044 46508 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2369C>A None
M0088158 OILOKOMM_00044 46532 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2393T>C None
M0088159 OILOKOMM_00044 46545 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2406A>G None
M0088160 OILOKOMM_00047 47312 6 Skin 0.40 protein_coding synonymous_variant LOW 408C>T Ala136Ala
M0088161 OILOKOMM_00047 47196 3 Skin 0.20 protein_coding missense_variant MODERATE 524T>C Val175Ala
M0088162 OILOKOMM_00047 47144 3 Skin 0.20 protein_coding synonymous_variant LOW 576G>C Ala192Ala
M0088163 OILOKOMM_00047 46757 3 Skin 0.20 protein_coding synonymous_variant LOW 963C>T Arg321Arg
M0088164 OILOKOMM_00044 46524 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2385G>A None
M0088165 OILOKOMM_00047 47432 5 Skin 0.33 protein_coding synonymous_variant LOW 288C>T Leu96Leu
M0088166 OILOKOMM_00047 46775 3 Skin 0.20 protein_coding synonymous_variant LOW 945T>C Thr315Thr
M0088167 OILOKOMM_00047 46802 3 Skin 0.20 protein_coding synonymous_variant LOW 918A>C Leu306Leu
M0088168 OILOKOMM_00047 46814 3 Skin 0.20 protein_coding synonymous_variant LOW 906C>G Ala302Ala
M0088169 OILOKOMM_00047 47530 3 Skin 0.20 protein_coding synonymous_variant LOW 190C>A Arg64Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OILOKOMM_00004 ANP74861.1|GH184 100 5.38e-248 1 364 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term