Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C473
  Reference Plasmid   NZ_CP020084.1
  Reference Plasmid Size   145829
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0088729 EPJLADJK_00066 62703 5 Skin 0.17 protein_coding missense_variant MODERATE 21C>G Phe7Leu
M0088730 EPJLADJK_00066 62709 5 Skin 0.17 protein_coding synonymous_variant LOW 27T>C Val9Val
M0088731 EPJLADJK_00066 62724 5 Skin 0.17 protein_coding synonymous_variant LOW 42G>A Thr14Thr
M0088732 EPJLADJK_00066 62730 5 Skin 0.17 protein_coding synonymous_variant LOW 48G>A Ser16Ser
M0088733 EPJLADJK_00066 62812 5 Skin 0.17 protein_coding missense_variant MODERATE 130A>G Lys44Glu
M0088734 EPJLADJK_00066 62813 5 Skin 0.17 protein_coding missense_variant MODERATE 131A>C Lys44Thr
M0088735 EPJLADJK_00066 62814 5 Skin 0.17 protein_coding synonymous_variant LOW 132G>A Lys44Lys
M0088736 EPJLADJK_00066 62823 5 Skin 0.17 protein_coding synonymous_variant LOW 141C>T Leu47Leu
M0088737 EPJLADJK_00066 62836 5 Skin 0.17 protein_coding missense_variant MODERATE 154G>A Glu52Lys
M0088738 EPJLADJK_00066 62852 5 Skin 0.17 protein_coding missense_variant MODERATE 170T>C Leu57Pro
M0088739 EPJLADJK_00066 62863 5 Skin 0.17 protein_coding missense_variant MODERATE 181T>C Phe61Leu
M0088740 EPJLADJK_00066 62880 5 Skin 0.17 protein_coding synonymous_variant LOW 198C>T Asn66Asn
M0088741 EPJLADJK_00066 62889 5 Skin 0.17 protein_coding synonymous_variant LOW 207T>C Phe69Phe
M0088742 EPJLADJK_00066 62896 5 Skin 0.17 protein_coding missense_variant MODERATE 214A>G Ile72Val
M0088743 EPJLADJK_00066 62901 5 Skin 0.17 protein_coding synonymous_variant LOW 219G>T Pro73Pro
M0088744 EPJLADJK_00066 62994 5 Skin 0.17 protein_coding synonymous_variant LOW 312T>C Pro104Pro
M0088745 EPJLADJK_00066 62996 5 Skin 0.17 protein_coding missense_variant MODERATE 314C>T Ser105Phe
M0088746 EPJLADJK_00066 62997 5 Skin 0.17 protein_coding synonymous_variant LOW 315C>T Ser105Ser
M0088747 EPJLADJK_00066 63004 5 Skin 0.17 protein_coding missense_variant MODERATE 322G>T Val108Leu
M0088748 EPJLADJK_00066 63011 5 Skin 0.17 protein_coding missense_variant MODERATE 329A>G Asp110Gly
M0088749 EPJLADJK_00066 63061 5 Skin 0.17 protein_coding synonymous_variant LOW 379A>C Arg127Arg
M0088750 EPJLADJK_00066 63108 5 Skin 0.17 protein_coding synonymous_variant LOW 426C>T Asp142Asp
M0088751 EPJLADJK_00066 63117 5 Skin 0.17 protein_coding synonymous_variant LOW 435T>C Cys145Cys
M0088752 EPJLADJK_00066 63119 5 Skin 0.17 protein_coding missense_variant MODERATE 437C>A Ala146Asp
M0088753 EPJLADJK_00066 63153 5 Skin 0.17 protein_coding synonymous_variant LOW 471G>A Leu157Leu
M0088754 EPJLADJK_00066 63174 5 Skin 0.17 protein_coding synonymous_variant LOW 492T>C Tyr164Tyr
M0088755 EPJLADJK_00066 63177 5 Skin 0.17 protein_coding synonymous_variant LOW 495T>C Arg165Arg
M0088756 EPJLADJK_00066 63195 5 Skin 0.17 protein_coding synonymous_variant LOW 513T>C Ser171Ser
M0088757 EPJLADJK_00066 63216 5 Skin 0.17 protein_coding synonymous_variant LOW 534G>C Ala178Ala
M0088758 EPJLADJK_00066 63231 5 Skin 0.17 protein_coding synonymous_variant LOW 549T>C Gly183Gly
M0088759 EPJLADJK_00066 63237 5 Skin 0.17 protein_coding synonymous_variant LOW 555T>C Ala185Ala
M0088760 EPJLADJK_00066 63240 5 Skin 0.17 protein_coding synonymous_variant LOW 558G>A Gln186Gln
M0088761 EPJLADJK_00066 63255 5 Skin 0.17 protein_coding synonymous_variant LOW 573C>T Ser191Ser
M0088762 EPJLADJK_00066 63258 5 Skin 0.17 protein_coding synonymous_variant LOW 576T>C Asp192Asp
M0088763 EPJLADJK_00066 63279 5 Skin 0.17 protein_coding synonymous_variant LOW 597C>T Asn199Asn
M0088764 EPJLADJK_00066 63291 5 Skin 0.17 protein_coding synonymous_variant LOW 609T>C Gly203Gly
M0088765 EPJLADJK_00066 63369 5 Skin 0.17 protein_coding synonymous_variant LOW 687A>C Gly229Gly
M0088766 EPJLADJK_00066 63372 6 Skin 0.21 protein_coding synonymous_variant LOW 690C>T Arg230Arg
M0088767 EPJLADJK_00066 63375 6 Skin 0.21 protein_coding synonymous_variant LOW 693T>C Val231Val
M0088768 EPJLADJK_00066 63426 5 Skin 0.17 protein_coding synonymous_variant LOW 744C>A Arg248Arg
M0088769 EPJLADJK_00066 63477 6 Skin 0.21 protein_coding synonymous_variant LOW 795T>G Leu265Leu
M0088770 EPJLADJK_00066 63478 5 Skin 0.17 protein_coding missense_variant MODERATE 796G>A Ala266Thr
M0088771 EPJLADJK_00066 63480 5 Skin 0.17 protein_coding synonymous_variant LOW 798C>T Ala266Ala
M0088772 EPJLADJK_00066 63516 4 Skin 0.14 protein_coding synonymous_variant LOW 834G>T Arg278Arg
M0088773 EPJLADJK_00067 63580 6 Skin 0.21 protein_coding synonymous_variant LOW 240G>T Ala80Ala
M0088774 EPJLADJK_00062 63827 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4650T>C None
M0088775 EPJLADJK_00068 63849 6 Skin 0.21 protein_coding missense_variant MODERATE 1459C>A Leu487Ile
M0088776 EPJLADJK_00068 63851 5 Skin 0.17 protein_coding missense_variant MODERATE 1457C>T Ser486Phe
M0088777 EPJLADJK_00068 63861 6 Skin 0.21 protein_coding missense_variant MODERATE 1447G>A Val483Met
M0088778 EPJLADJK_00020 18041 5 Skin 0.17 protein_coding missense_variant MODERATE 42G>T Arg14Ser
M0088779 EPJLADJK_00016 18129 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4297T>C None
M0088780 EPJLADJK_00016 18134 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4302A>G None
M0088781 EPJLADJK_00016 18142 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4310G>A None
M0088782 EPJLADJK_00021 18160 4 Skin 0.14 protein_coding missense_variant MODERATE 11T>C Val4Ala
M0088783 EPJLADJK_00021 18227 6 Skin 0.21 protein_coding synonymous_variant LOW 78C>T Arg26Arg
M0088784 EPJLADJK_00021 18263 5 Skin 0.17 protein_coding synonymous_variant LOW 114A>C Gly38Gly
M0088785 EPJLADJK_00021 18281 6 Skin 0.21 protein_coding synonymous_variant LOW 132T>C Ala44Ala
M0088786 EPJLADJK_00021 18302 6 Skin 0.21 protein_coding synonymous_variant LOW 153C>T Leu51Leu
M0088787 EPJLADJK_00021 18305 6 Skin 0.21 protein_coding synonymous_variant LOW 156C>T Tyr52Tyr
M0088788 EPJLADJK_00021 18359 6 Skin 0.21 protein_coding synonymous_variant LOW 210G>A Thr70Thr
M0088789 EPJLADJK_00021 18545 4 Skin 0.14 protein_coding synonymous_variant LOW 396G>C Val132Val
M0088790 EPJLADJK_00021 18623 4 Skin 0.14 protein_coding synonymous_variant LOW 474C>T Gly158Gly
M0088791 EPJLADJK_00022 18745 3 Skin 0.10 protein_coding synonymous_variant LOW 405C>A Pro135Pro
M0088792 EPJLADJK_00022 18754 3 Skin 0.10 protein_coding synonymous_variant LOW 396C>G Arg132Arg
M0088793 EPJLADJK_00022 18790 3 Skin 0.10 protein_coding synonymous_variant LOW 360A>G Gln120Gln
M0088794 EPJLADJK_00022 18795 3 Skin 0.10 protein_coding missense_variant MODERATE 355G>A Ala119Thr
M0088795 EPJLADJK_00022 18808 3 Skin 0.10 protein_coding synonymous_variant LOW 342G>C Ala114Ala
M0088796 EPJLADJK_00022 18814 4 Skin 0.14 protein_coding synonymous_variant LOW 336C>T Asp112Asp
M0088797 EPJLADJK_00022 18817 4 Skin 0.14 protein_coding synonymous_variant LOW 333A>G Gln111Gln
M0088798 EPJLADJK_00022 18820 4 Skin 0.14 protein_coding synonymous_variant LOW 330A>G Thr110Thr
M0088799 EPJLADJK_00022 18832 4 Skin 0.14 protein_coding missense_variant MODERATE 318C>G Asn106Lys
M0088800 EPJLADJK_00022 18835 3 Skin 0.10 protein_coding synonymous_variant LOW 315C>T Gly105Gly
M0088801 EPJLADJK_00022 18871 3 Skin 0.10 protein_coding synonymous_variant LOW 279C>T Leu93Leu
M0088802 EPJLADJK_00022 18874 3 Skin 0.10 protein_coding synonymous_variant LOW 276A>G Glu92Glu
M0088803 EPJLADJK_00022 18879 4 Skin 0.14 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0088804 EPJLADJK_00022 18881 3 Skin 0.10 protein_coding missense_variant MODERATE 269C>T Pro90Leu
M0088805 EPJLADJK_00022 18889 4 Skin 0.14 protein_coding synonymous_variant LOW 261G>T Gly87Gly
M0088806 EPJLADJK_00022 18892 4 Skin 0.14 protein_coding synonymous_variant LOW 258T>C Phe86Phe
M0088807 EPJLADJK_00022 18901 4 Skin 0.14 protein_coding synonymous_variant LOW 249A>G Leu83Leu
M0088808 EPJLADJK_00022 18964 4 Skin 0.14 protein_coding synonymous_variant LOW 186T>C Thr62Thr
M0088809 EPJLADJK_00022 18973 3 Skin 0.10 protein_coding synonymous_variant LOW 177C>G Leu59Leu
M0088810 EPJLADJK_00022 18976 3 Skin 0.10 protein_coding synonymous_variant LOW 174C>G Thr58Thr
M0088811 EPJLADJK_00025 20037 3 Skin 0.10 protein_coding synonymous_variant LOW 420T>C Gly140Gly
M0088812 EPJLADJK_00025 20040 3 Skin 0.10 protein_coding synonymous_variant LOW 417C>T Asp139Asp
M0088813 EPJLADJK_00025 20070 3 Skin 0.10 protein_coding missense_variant MODERATE 387G>T Gln129His
M0088814 EPJLADJK_00025 20073 3 Skin 0.10 protein_coding synonymous_variant LOW 384G>C Arg128Arg
M0088815 EPJLADJK_00025 20100 3 Skin 0.10 protein_coding synonymous_variant LOW 357C>A Ala119Ala
M0088816 EPJLADJK_00025 20103 3 Skin 0.10 protein_coding synonymous_variant LOW 354T>C Tyr118Tyr
M0088817 EPJLADJK_00025 20113 3 Skin 0.10 protein_coding missense_variant MODERATE 344A>G Asn115Ser
M0088818 EPJLADJK_00025 20114 3 Skin 0.10 protein_coding missense_variant MODERATE 343A>T Asn115Tyr
M0088819 EPJLADJK_00025 20118 4 Skin 0.14 protein_coding synonymous_variant LOW 339G>A Pro113Pro
M0088820 EPJLADJK_00025 20121 4 Skin 0.14 protein_coding synonymous_variant LOW 336T>G Gly112Gly
M0088821 EPJLADJK_00025 20136 3 Skin 0.10 protein_coding synonymous_variant LOW 321C>T Ile107Ile
M0088822 EPJLADJK_00025 20160 3 Skin 0.10 protein_coding synonymous_variant LOW 297G>C Val99Val
M0088823 EPJLADJK_00025 20169 3 Skin 0.10 protein_coding synonymous_variant LOW 288C>A Ser96Ser
M0088824 EPJLADJK_00025 20172 3 Skin 0.10 protein_coding synonymous_variant LOW 285C>T Asn95Asn
M0088825 EPJLADJK_00025 20181 3 Skin 0.10 protein_coding missense_variant MODERATE 276G>C Met92Ile
M0088826 EPJLADJK_00025 20203 4 Skin 0.14 protein_coding missense_variant MODERATE 254A>T Tyr85Phe
M0088827 EPJLADJK_00025 20211 3 Skin 0.10 protein_coding synonymous_variant LOW 246A>C Ala82Ala
M0088828 EPJLADJK_00025 20214 3 Skin 0.10 protein_coding synonymous_variant LOW 243C>A Ala81Ala
M0088829 EPJLADJK_00025 20232 4 Skin 0.14 protein_coding synonymous_variant LOW 225G>C Val75Val
M0088830 EPJLADJK_00025 20295 4 Skin 0.14 protein_coding synonymous_variant LOW 162A>G Ala54Ala
M0088831 EPJLADJK_00025 20311 4 Skin 0.14 protein_coding missense_variant MODERATE 146A>C Asn49Thr
M0088832 EPJLADJK_00025 20367 3 Skin 0.10 protein_coding synonymous_variant LOW 90G>A Glu30Glu
M0088833 EPJLADJK_00018 20463 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4454G>A None
M0088834 EPJLADJK_00026 20703 3 Skin 0.10 protein_coding synonymous_variant LOW 408A>C Thr136Thr
M0088835 EPJLADJK_00026 20721 3 Skin 0.10 protein_coding synonymous_variant LOW 390C>T Tyr130Tyr
M0088836 EPJLADJK_00026 20946 3 Skin 0.10 protein_coding synonymous_variant LOW 165T>C Leu55Leu
M0088837 EPJLADJK_00026 20976 3 Skin 0.10 protein_coding synonymous_variant LOW 135C>T Cys45Cys
M0088838 EPJLADJK_00026 20979 3 Skin 0.10 protein_coding synonymous_variant LOW 132C>T Ser44Ser
M0088839 EPJLADJK_00026 20980 3 Skin 0.10 protein_coding missense_variant MODERATE 131G>C Ser44Thr
M0088840 EPJLADJK_00026 20983 3 Skin 0.10 protein_coding missense_variant MODERATE 128G>C Gly43Ala
M0088841 EPJLADJK_00026 20985 3 Skin 0.10 protein_coding synonymous_variant LOW 126T>C Val42Val
M0088842 EPJLADJK_00026 20986 3 Skin 0.10 protein_coding missense_variant MODERATE 125T>C Val42Ala
M0088843 EPJLADJK_00026 21006 3 Skin 0.10 protein_coding synonymous_variant LOW 105C>T Val35Val
M0088844 EPJLADJK_00026 21015 3 Skin 0.10 protein_coding synonymous_variant LOW 96C>G Val32Val
M0088845 EPJLADJK_00026 21033 3 Skin 0.10 protein_coding synonymous_variant LOW 78G>A Arg26Arg
M0088846 EPJLADJK_00026 21045 3 Skin 0.10 protein_coding synonymous_variant LOW 66G>A Glu22Glu
M0088847 EPJLADJK_00026 21060 3 Skin 0.10 protein_coding synonymous_variant LOW 51A>G Gly17Gly
M0088848 EPJLADJK_00019 21113 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4365C>G None
M0088849 EPJLADJK_00027 21189 3 Skin 0.10 protein_coding missense_variant MODERATE 362G>C Gly121Ala
M0088850 EPJLADJK_00027 21196 3 Skin 0.10 protein_coding missense_variant MODERATE 355C>A Leu119Met
M0088851 EPJLADJK_00027 21236 3 Skin 0.10 protein_coding synonymous_variant LOW 315A>T Pro105Pro
M0088852 EPJLADJK_00027 21338 3 Skin 0.10 protein_coding synonymous_variant LOW 213A>G Ser71Ser
M0088853 EPJLADJK_00027 21359 3 Skin 0.10 protein_coding synonymous_variant LOW 192A>C Gly64Gly
M0088854 EPJLADJK_00027 21395 3 Skin 0.10 protein_coding synonymous_variant LOW 156A>G Gln52Gln
M0088855 EPJLADJK_00027 21401 3 Skin 0.10 protein_coding synonymous_variant LOW 150T>C Ile50Ile
M0088856 EPJLADJK_00027 21403 3 Skin 0.10 protein_coding missense_variant MODERATE 148A>T Ile50Phe
M0088857 EPJLADJK_00027 21434 3 Skin 0.10 protein_coding synonymous_variant LOW 117C>T Gly39Gly
M0088858 EPJLADJK_00027 21437 3 Skin 0.10 protein_coding synonymous_variant LOW 114T>C Ile38Ile
M0088859 EPJLADJK_00027 21453 3 Skin 0.10 protein_coding missense_variant MODERATE 98G>A Arg33Gln
M0088860 EPJLADJK_00027 21461 3 Skin 0.10 protein_coding synonymous_variant LOW 90T>C Val30Val
M0088861 EPJLADJK_00027 21468 3 Skin 0.10 protein_coding missense_variant MODERATE 83A>G Asp28Gly
M0088862 EPJLADJK_00027 21470 3 Skin 0.10 protein_coding synonymous_variant LOW 81C>G Ala27Ala
M0088863 EPJLADJK_00048 44518 3 Skin 0.10 protein_coding synonymous_variant LOW 498A>G Glu166Glu
M0088864 EPJLADJK_00048 44557 3 Skin 0.10 protein_coding synonymous_variant LOW 537C>T Ser179Ser
M0088865 EPJLADJK_00044 41042 5 Skin 0.17 protein_coding synonymous_variant LOW 414T>G Leu138Leu
M0088866 EPJLADJK_00044 41045 5 Skin 0.17 protein_coding synonymous_variant LOW 411C>T Ala137Ala
M0088867 EPJLADJK_00044 41084 5 Skin 0.17 protein_coding synonymous_variant LOW 372G>A Ala124Ala
M0088868 EPJLADJK_00044 41087 5 Skin 0.17 protein_coding synonymous_variant LOW 369C>T Arg123Arg
M0088869 EPJLADJK_00044 41088 5 Skin 0.17 protein_coding missense_variant MODERATE 368G>T Arg123Leu
M0088870 EPJLADJK_00044 41110 5 Skin 0.17 protein_coding missense_variant MODERATE 346G>T Ala116Ser
M0088871 EPJLADJK_00044 41114 5 Skin 0.17 protein_coding missense_variant MODERATE 342C>G Ser114Arg
M0088872 EPJLADJK_00044 41115 5 Skin 0.17 protein_coding missense_variant MODERATE 341G>C Ser114Thr
M0088873 EPJLADJK_00044 41116 5 Skin 0.17 protein_coding missense_variant MODERATE 340A>G Ser114Gly
M0088874 EPJLADJK_00044 41126 5 Skin 0.17 protein_coding synonymous_variant LOW 330A>T Ala110Ala
M0088875 EPJLADJK_00044 41155 5 Skin 0.17 protein_coding missense_variant MODERATE 301A>C Ile101Leu
M0088876 EPJLADJK_00044 41159 5 Skin 0.17 protein_coding synonymous_variant LOW 297T>C Asp99Asp
M0088877 EPJLADJK_00044 41161 5 Skin 0.17 protein_coding missense_variant MODERATE 295G>A Asp99Asn
M0088878 EPJLADJK_00044 41189 5 Skin 0.17 protein_coding synonymous_variant LOW 267A>G Ala89Ala
M0088879 EPJLADJK_00044 41204 5 Skin 0.17 protein_coding synonymous_variant LOW 252T>C Ser84Ser
M0088880 EPJLADJK_00044 41216 6 Skin 0.21 protein_coding synonymous_variant LOW 240C>T Ile80Ile
M0088881 EPJLADJK_00044 41219 6 Skin 0.21 protein_coding synonymous_variant LOW 237G>A Gln79Gln
M0088882 EPJLADJK_00044 41246 6 Skin 0.21 protein_coding missense_variant MODERATE 210G>C Gln70His
M0088883 EPJLADJK_00044 41247 6 Skin 0.21 protein_coding missense_variant MODERATE 209A>T Gln70Leu
M0088884 EPJLADJK_00044 41250 6 Skin 0.21 protein_coding missense_variant MODERATE 206C>G Ala69Gly
M0088885 EPJLADJK_00044 41291 6 Skin 0.21 protein_coding synonymous_variant LOW 165T>C Ala55Ala
M0088886 EPJLADJK_00044 41299 6 Skin 0.21 protein_coding synonymous_variant LOW 157C>A Arg53Arg
M0088887 EPJLADJK_00044 41300 6 Skin 0.21 protein_coding synonymous_variant LOW 156A>G Gln52Gln
M0088888 EPJLADJK_00044 41332 6 Skin 0.21 protein_coding missense_variant MODERATE 124A>G Arg42Gly
M0088889 EPJLADJK_00044 41344 4 Skin 0.14 protein_coding missense_variant MODERATE 112C>A Arg38Ser
M0088890 EPJLADJK_00044 41366 4 Skin 0.14 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0088891 EPJLADJK_00044 41377 5 Skin 0.17 protein_coding missense_variant MODERATE 79C>A Leu27Met
M0088892 EPJLADJK_00044 41395 4 Skin 0.14 protein_coding missense_variant MODERATE 61C>A His21Asn
M0088893 EPJLADJK_00044 41440 5 Skin 0.17 protein_coding missense_variant MODERATE 16C>G Gln6Glu
M0088894 EPJLADJK_00044 41444 5 Skin 0.17 protein_coding synonymous_variant LOW 12T>A Leu4Leu
M0088895 EPJLADJK_00042 41512 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4654C>A None
M0088896 EPJLADJK_00042 41534 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4676T>C None
M0088897 EPJLADJK_00042 41554 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4696C>G None
M0088898 EPJLADJK_00042 41562 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4704C>G None
M0088899 EPJLADJK_00042 41567 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4709C>T None
M0088900 EPJLADJK_00042 41569 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4711T>C None
M0088901 EPJLADJK_00042 41582 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4724A>G None
M0088902 EPJLADJK_00042 41588 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4730A>G None
M0088903 EPJLADJK_00042 41593 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4735A>T None
M0088904 EPJLADJK_00042 41613 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4755C>G None
M0088905 EPJLADJK_00042 41637 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4779T>C None
M0088906 EPJLADJK_00042 41652 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4794C>T None
M0088907 EPJLADJK_00045 41782 5 Skin 0.17 protein_coding synonymous_variant LOW 105C>G Leu35Leu
M0088908 EPJLADJK_00045 41783 6 Skin 0.21 protein_coding missense_variant MODERATE 106A>G Asn36Asp
M0088909 EPJLADJK_00045 41791 5 Skin 0.17 protein_coding synonymous_variant LOW 114C>G Thr38Thr
M0088910 EPJLADJK_00045 42343 5 Skin 0.17 protein_coding synonymous_variant LOW 666T>A Arg222Arg
M0088911 EPJLADJK_00045 42367 6 Skin 0.21 protein_coding missense_variant MODERATE 690T>G Asn230Lys
M0088912 EPJLADJK_00045 42403 5 Skin 0.17 protein_coding synonymous_variant LOW 726T>C Ala242Ala
M0088913 EPJLADJK_00045 42451 4 Skin 0.14 protein_coding synonymous_variant LOW 774T>C Leu258Leu
M0088914 EPJLADJK_00045 42469 6 Skin 0.21 protein_coding synonymous_variant LOW 792A>G Arg264Arg
M0088915 EPJLADJK_00045 42667 3 Skin 0.10 protein_coding synonymous_variant LOW 990G>A Pro330Pro
M0088916 EPJLADJK_00045 42670 3 Skin 0.10 protein_coding synonymous_variant LOW 993C>T Ile331Ile
M0088917 EPJLADJK_00045 42673 3 Skin 0.10 protein_coding synonymous_variant LOW 996A>G Leu332Leu
M0088918 EPJLADJK_00045 42811 3 Skin 0.10 protein_coding synonymous_variant LOW 1134T>C His378His
M0088919 EPJLADJK_00046 42894 4 Skin 0.14 protein_coding synonymous_variant LOW 21C>T Ile7Ile
M0088920 EPJLADJK_00046 42966 3 Skin 0.10 protein_coding synonymous_variant LOW 93C>T Thr31Thr
M0088921 EPJLADJK_00046 43092 4 Skin 0.14 protein_coding synonymous_variant LOW 219T>C Tyr73Tyr
M0088922 EPJLADJK_00046 43131 4 Skin 0.14 protein_coding synonymous_variant LOW 258A>G Glu86Glu
M0088923 EPJLADJK_00046 43134 4 Skin 0.14 protein_coding synonymous_variant LOW 261C>G Ser87Ser
M0088924 EPJLADJK_00046 43176 3 Skin 0.10 protein_coding synonymous_variant LOW 303C>T Arg101Arg
M0088925 EPJLADJK_00046 43179 3 Skin 0.10 protein_coding synonymous_variant LOW 306G>T Arg102Arg
M0088926 EPJLADJK_00046 43182 3 Skin 0.10 protein_coding synonymous_variant LOW 309A>G Lys103Lys
M0088927 EPJLADJK_00046 43227 3 Skin 0.10 protein_coding synonymous_variant LOW 354C>T Arg118Arg
M0088928 EPJLADJK_00046 43275 4 Skin 0.14 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0088929 EPJLADJK_00046 43356 3 Skin 0.10 protein_coding synonymous_variant LOW 483T>C Ile161Ile
M0088930 EPJLADJK_00046 43515 3 Skin 0.10 protein_coding synonymous_variant LOW 642G>C Ala214Ala
M0088931 EPJLADJK_00046 43536 3 Skin 0.10 protein_coding synonymous_variant LOW 663G>C Val221Val
M0088932 EPJLADJK_00046 43539 3 Skin 0.10 protein_coding synonymous_variant LOW 666T>G Arg222Arg
M0088933 EPJLADJK_00046 43718 3 Skin 0.10 protein_coding missense_variant MODERATE 845T>C Val282Ala
M0088934 EPJLADJK_00046 43719 3 Skin 0.10 protein_coding synonymous_variant LOW 846T>C Val282Val
M0088935 EPJLADJK_00046 43740 3 Skin 0.10 protein_coding synonymous_variant LOW 867G>C Ala289Ala
M0088936 EPJLADJK_00046 43759 3 Skin 0.10 protein_coding missense_variant MODERATE 886A>G Ile296Val
M0088937 EPJLADJK_00045 41863 4 Skin 0.14 protein_coding synonymous_variant LOW 186G>A Gly62Gly
M0088938 EPJLADJK_00045 41881 4 Skin 0.14 protein_coding synonymous_variant LOW 204A>G Lys68Lys
M0088939 EPJLADJK_00045 41887 4 Skin 0.14 protein_coding synonymous_variant LOW 210C>T Leu70Leu
M0088940 EPJLADJK_00045 41899 4 Skin 0.14 protein_coding synonymous_variant LOW 222C>A Arg74Arg
M0088941 EPJLADJK_00045 42160 4 Skin 0.14 protein_coding synonymous_variant LOW 483A>T Thr161Thr
M0088942 EPJLADJK_00022 19114 4 Skin 0.14 protein_coding synonymous_variant LOW 36C>T Asn12Asn
M0088943 EPJLADJK_00023 19220 4 Skin 0.14 protein_coding synonymous_variant LOW 285A>G Val95Val
M0088944 EPJLADJK_00068 63934 5 Skin 0.17 protein_coding synonymous_variant LOW 1374A>G Glu458Glu
M0088945 EPJLADJK_00022 19012 3 Skin 0.10 protein_coding synonymous_variant LOW 138A>T Pro46Pro
M0088946 EPJLADJK_00022 19024 3 Skin 0.10 protein_coding synonymous_variant LOW 126T>C Thr42Thr
M0088947 EPJLADJK_00022 19037 3 Skin 0.10 protein_coding missense_variant MODERATE 113G>T Ser38Ile
M0088948 EPJLADJK_00022 19063 3 Skin 0.10 protein_coding synonymous_variant LOW 87C>T Gly29Gly
M0088949 EPJLADJK_00023 19355 3 Skin 0.10 protein_coding synonymous_variant LOW 150C>G Thr50Thr
M0088950 EPJLADJK_00023 19358 3 Skin 0.10 protein_coding synonymous_variant LOW 147T>G Arg49Arg
M0088951 EPJLADJK_00023 19361 3 Skin 0.10 protein_coding synonymous_variant LOW 144T>C Asp48Asp
M0088952 EPJLADJK_00023 19379 3 Skin 0.10 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0088953 EPJLADJK_00046 43611 3 Skin 0.10 protein_coding synonymous_variant LOW 738G>A Gln246Gln
M0088954 EPJLADJK_00046 43623 3 Skin 0.10 protein_coding synonymous_variant LOW 750G>A Glu250Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EPJLADJK_00066 AOG02746.1|GH23 92.8 1.33e-194 1 293 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term