Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C476
  Reference Plasmid   NZ_CP020446.2
  Reference Plasmid Size   42744
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0088955 PBIIHJKJ_00002 734 6 Skin 0.33 protein_coding missense_variant MODERATE 31G>A Gly11Ser
M0088956 PBIIHJKJ_00002 792 5 Skin 0.28 protein_coding missense_variant MODERATE 89T>C Leu30Pro
M0088957 PBIIHJKJ_00002 884 7 Skin 0.39 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0088958 PBIIHJKJ_00002 1123 6 Skin 0.33 protein_coding synonymous_variant LOW 420T>C Pro140Pro
M0088959 PBIIHJKJ_00002 1390 9 Skin 0.50 protein_coding synonymous_variant LOW 687C>T Ser229Ser
M0088960 PBIIHJKJ_00002 1409 9 Skin 0.50 protein_coding missense_variant MODERATE 706G>T Ala236Ser
M0088961 PBIIHJKJ_00006 1500 9 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3136C>G None
M0088962 PBIIHJKJ_00006 1501 9 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3135T>C None
M0088963 PBIIHJKJ_00006 1503 9 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3133C>A None
M0088964 PBIIHJKJ_00006 1504 9 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3132T>G None
M0088965 PBIIHJKJ_00006 1505 9 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3131C>T None
M0088966 PBIIHJKJ_00003 1514 9 Skin 0.50 protein_coding synonymous_variant LOW 330C>T Ala110Ala
M0088967 PBIIHJKJ_00003 1544 9 Skin 0.50 protein_coding synonymous_variant LOW 300C>T Arg100Arg
M0088968 PBIIHJKJ_00003 1595 9 Skin 0.50 protein_coding synonymous_variant LOW 249C>A Ala83Ala
M0088969 PBIIHJKJ_00003 1615 9 Skin 0.50 protein_coding missense_variant MODERATE 229G>A Val77Ile
M0088970 PBIIHJKJ_00003 1658 9 Skin 0.50 protein_coding synonymous_variant LOW 186G>C Thr62Thr
M0088971 PBIIHJKJ_00003 1678 9 Skin 0.50 protein_coding missense_variant MODERATE 166G>T Ala56Ser
M0088972 PBIIHJKJ_00004 1997 5 Skin 0.28 protein_coding synonymous_variant LOW 2343C>T Ser781Ser
M0088973 PBIIHJKJ_00004 2125 11 Skin 0.61 protein_coding synonymous_variant LOW 2215C>A Arg739Arg
M0088974 PBIIHJKJ_00004 2317 10 Skin 0.56 protein_coding synonymous_variant LOW 2023T>C Leu675Leu
M0088975 PBIIHJKJ_00004 2318 10 Skin 0.56 protein_coding synonymous_variant LOW 2022G>A Glu674Glu
M0088976 PBIIHJKJ_00004 3842 6 Skin 0.33 protein_coding synonymous_variant LOW 498C>G Gly166Gly
M0088977 PBIIHJKJ_00004 3845 6 Skin 0.33 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0088978 PBIIHJKJ_00004 3848 6 Skin 0.33 protein_coding synonymous_variant LOW 492T>G Leu164Leu
M0088979 PBIIHJKJ_00004 3899 6 Skin 0.33 protein_coding synonymous_variant LOW 441T>C Ala147Ala
M0088980 PBIIHJKJ_00004 3907 6 Skin 0.33 protein_coding missense_variant MODERATE 433C>G Leu145Val
M0088981 PBIIHJKJ_00036 35651 3 Skin 0.17 protein_coding synonymous_variant LOW 489A>G Leu163Leu
M0088982 PBIIHJKJ_00036 36342 3 Skin 0.17 protein_coding missense_variant MODERATE 1180C>T Leu394Phe
M0088983 PBIIHJKJ_00036 36626 3 Skin 0.17 protein_coding synonymous_variant LOW 1464T>C Asp488Asp
M0088984 PBIIHJKJ_00001 281 5 Skin 0.28 protein_coding missense_variant MODERATE 160G>T Ala54Ser
M0088985 PBIIHJKJ_00001 282 5 Skin 0.28 protein_coding missense_variant MODERATE 161C>A Ala54Asp
M0088986 PBIIHJKJ_00001 285 5 Skin 0.28 protein_coding missense_variant MODERATE 164C>G Pro55Arg
M0088987 PBIIHJKJ_00001 305 5 Skin 0.28 protein_coding synonymous_variant LOW 184T>C Leu62Leu
M0088988 PBIIHJKJ_00001 346 5 Skin 0.28 protein_coding synonymous_variant LOW 225T>C Gly75Gly
M0088989 PBIIHJKJ_00001 349 5 Skin 0.28 protein_coding synonymous_variant LOW 228G>C Ala76Ala
M0088990 PBIIHJKJ_00001 354 5 Skin 0.28 protein_coding missense_variant MODERATE 233G>C Gly78Ala
M0088991 PBIIHJKJ_00001 392 5 Skin 0.28 protein_coding missense_variant MODERATE 271T>C Phe91Leu
M0088992 PBIIHJKJ_00001 461 4 Skin 0.22 protein_coding missense_variant MODERATE 340G>A Ala114Thr
M0088993 PBIIHJKJ_00002 785 5 Skin 0.28 protein_coding missense_variant MODERATE 82G>A Ala28Thr
M0088994 PBIIHJKJ_00002 901 3 Skin 0.17 protein_coding synonymous_variant LOW 198C>T Pro66Pro
M0088995 PBIIHJKJ_00002 1272 3 Skin 0.17 protein_coding missense_variant MODERATE 569G>A Cys190Tyr
M0088996 PBIIHJKJ_00004 3083 7 Skin 0.39 protein_coding synonymous_variant LOW 1257T>C Ala419Ala
M0088997 PBIIHJKJ_00004 3097 7 Skin 0.39 protein_coding missense_variant MODERATE 1243G>T Val415Leu
M0088998 PBIIHJKJ_00004 3098 7 Skin 0.39 protein_coding synonymous_variant LOW 1242T>C Val414Val
M0088999 PBIIHJKJ_00004 3361 5 Skin 0.28 protein_coding missense_variant MODERATE 979C>G Leu327Val
M0089000 PBIIHJKJ_00004 3365 5 Skin 0.28 protein_coding synonymous_variant LOW 975C>T Thr325Thr
M0089001 PBIIHJKJ_00004 3366 5 Skin 0.28 protein_coding missense_variant MODERATE 974C>T Thr325Ile
M0089002 PBIIHJKJ_00004 3367 5 Skin 0.28 protein_coding missense_variant MODERATE 973A>C Thr325Pro
M0089003 PBIIHJKJ_00004 3368 5 Skin 0.28 protein_coding synonymous_variant LOW 972C>G Gly324Gly
M0089004 PBIIHJKJ_00004 3377 5 Skin 0.28 protein_coding synonymous_variant LOW 963C>G Pro321Pro
M0089005 PBIIHJKJ_00004 3389 5 Skin 0.28 protein_coding synonymous_variant LOW 951C>G Gly317Gly
M0089006 PBIIHJKJ_00004 3392 5 Skin 0.28 protein_coding synonymous_variant LOW 948G>T Pro316Pro
M0089007 PBIIHJKJ_00004 3395 5 Skin 0.28 protein_coding synonymous_variant LOW 945T>C Arg315Arg
M0089008 PBIIHJKJ_00004 3401 5 Skin 0.28 protein_coding synonymous_variant LOW 939C>G Arg313Arg
M0089009 PBIIHJKJ_00004 3404 5 Skin 0.28 protein_coding synonymous_variant LOW 936T>G Leu312Leu
M0089010 PBIIHJKJ_00004 3445 5 Skin 0.28 protein_coding missense_variant MODERATE 895T>G Ser299Ala
M0089011 PBIIHJKJ_00004 3446 5 Skin 0.28 protein_coding synonymous_variant LOW 894A>G Glu298Glu
M0089012 PBIIHJKJ_00004 3452 5 Skin 0.28 protein_coding synonymous_variant LOW 888A>C Gly296Gly
M0089013 PBIIHJKJ_00004 3467 5 Skin 0.28 protein_coding synonymous_variant LOW 873G>C Leu291Leu
M0089014 PBIIHJKJ_00004 3469 5 Skin 0.28 protein_coding missense_variant MODERATE 871C>A Leu291Met
M0089015 PBIIHJKJ_00004 3827 5 Skin 0.28 protein_coding missense_variant MODERATE 513C>G Phe171Leu
M0089016 PBIIHJKJ_00004 3829 5 Skin 0.28 protein_coding missense_variant MODERATE 511T>C Phe171Leu
M0089017 PBIIHJKJ_00004 3843 5 Skin 0.28 protein_coding missense_variant MODERATE 497G>C Gly166Ala
M0089018 PBIIHJKJ_00004 3850 5 Skin 0.28 protein_coding missense_variant MODERATE 490C>T Leu164Phe
M0089019 PBIIHJKJ_00004 3854 5 Skin 0.28 protein_coding missense_variant MODERATE 486C>G Ile162Met
M0089020 PBIIHJKJ_00004 3896 5 Skin 0.28 protein_coding synonymous_variant LOW 444G>C Val148Val
M0089021 PBIIHJKJ_00004 3898 5 Skin 0.28 protein_coding missense_variant MODERATE 442G>A Val148Met
M0089022 PBIIHJKJ_00004 3932 5 Skin 0.28 protein_coding synonymous_variant LOW 408T>G Leu136Leu
M0089023 PBIIHJKJ_00004 3947 8 Skin 0.44 protein_coding synonymous_variant LOW 393C>T Gly131Gly
M0089024 PBIIHJKJ_00004 3974 8 Skin 0.44 protein_coding synonymous_variant LOW 366T>C Leu122Leu
M0089025 PBIIHJKJ_00004 4004 5 Skin 0.28 protein_coding synonymous_variant LOW 336C>T Ser112Ser
M0089026 PBIIHJKJ_00004 4007 8 Skin 0.44 protein_coding synonymous_variant LOW 333T>C Gly111Gly
M0089027 PBIIHJKJ_00004 4015 5 Skin 0.28 protein_coding missense_variant MODERATE 325G>A Glu109Lys
M0089028 PBIIHJKJ_00004 4024 5 Skin 0.28 protein_coding synonymous_variant LOW 316C>A Arg106Arg
M0089029 PBIIHJKJ_00004 4031 5 Skin 0.28 protein_coding synonymous_variant LOW 309C>G Pro103Pro
M0089030 PBIIHJKJ_00004 4040 5 Skin 0.28 protein_coding synonymous_variant LOW 300C>T Pro100Pro
M0089031 PBIIHJKJ_00004 4057 5 Skin 0.28 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0089032 PBIIHJKJ_00004 4058 8 Skin 0.44 protein_coding synonymous_variant LOW 282G>A Gly94Gly
M0089033 PBIIHJKJ_00004 4061 8 Skin 0.44 protein_coding synonymous_variant LOW 279C>G Thr93Thr
M0089034 PBIIHJKJ_00004 4300 5 Skin 0.28 protein_coding missense_variant MODERATE 40A>G Lys14Glu
M0089035 PBIIHJKJ_00004 4334 5 Skin 0.28 protein_coding synonymous_variant LOW 6T>C Ser2Ser
M0089036 PBIIHJKJ_00005 4471 5 Skin 0.28 protein_coding missense_variant MODERATE 143C>A Pro48Gln
M0089037 PBIIHJKJ_00005 4473 5 Skin 0.28 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0089038 PBIIHJKJ_00005 4476 5 Skin 0.28 protein_coding synonymous_variant LOW 138G>T Pro46Pro
M0089039 PBIIHJKJ_00006 4715 5 Skin 0.28 protein_coding missense_variant MODERATE 80C>T Ala27Val
M0089040 PBIIHJKJ_00006 4908 4 Skin 0.22 protein_coding synonymous_variant LOW 273G>C Leu91Leu
M0089041 PBIIHJKJ_00006 4920 7 Skin 0.39 protein_coding synonymous_variant LOW 285C>G Pro95Pro
M0089042 PBIIHJKJ_00006 4931 4 Skin 0.22 protein_coding missense_variant MODERATE 296T>C Ile99Thr
M0089043 PBIIHJKJ_00006 4932 4 Skin 0.22 protein_coding missense_variant MODERATE 297C>G Ile99Met
M0089044 PBIIHJKJ_00006 4935 4 Skin 0.22 protein_coding synonymous_variant LOW 300G>T Ala100Ala
M0089045 PBIIHJKJ_00006 4959 7 Skin 0.39 protein_coding synonymous_variant LOW 324G>C Ala108Ala
M0089046 PBIIHJKJ_00006 4965 5 Skin 0.28 protein_coding synonymous_variant LOW 330C>G Pro110Pro
M0089047 PBIIHJKJ_00006 4983 4 Skin 0.22 protein_coding synonymous_variant LOW 348C>T His116His
M0089048 PBIIHJKJ_00006 4995 4 Skin 0.22 protein_coding synonymous_variant LOW 360C>T His120His
M0089049 PBIIHJKJ_00006 4997 7 Skin 0.39 protein_coding missense_variant MODERATE 362G>A Gly121Asp
M0089050 PBIIHJKJ_00006 5082 7 Skin 0.39 protein_coding synonymous_variant LOW 447A>G Pro149Pro
M0089051 PBIIHJKJ_00007 5222 7 Skin 0.39 protein_coding missense_variant MODERATE 376T>A Ser126Thr
M0089052 PBIIHJKJ_00007 5284 5 Skin 0.28 protein_coding missense_variant MODERATE 314A>G Gln105Arg
M0089053 PBIIHJKJ_00008 5723 5 Skin 0.28 protein_coding synonymous_variant LOW 339T>C His113His
M0089054 PBIIHJKJ_00008 5726 5 Skin 0.28 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0089055 PBIIHJKJ_00008 5774 5 Skin 0.28 protein_coding synonymous_variant LOW 288T>C His96His
M0089056 PBIIHJKJ_00008 5804 5 Skin 0.28 protein_coding synonymous_variant LOW 258C>G Pro86Pro
M0089057 PBIIHJKJ_00004 2009 3 Skin 0.17 protein_coding synonymous_variant LOW 2331C>G Ala777Ala
M0089058 PBIIHJKJ_00004 2015 3 Skin 0.17 protein_coding synonymous_variant LOW 2325T>C Phe775Phe
M0089059 PBIIHJKJ_00004 2156 3 Skin 0.17 protein_coding synonymous_variant LOW 2184C>G Val728Val
M0089060 PBIIHJKJ_00004 2159 3 Skin 0.17 protein_coding synonymous_variant LOW 2181T>C Ile727Ile
M0089061 PBIIHJKJ_00004 2198 3 Skin 0.17 protein_coding synonymous_variant LOW 2142T>C Ser714Ser
M0089062 PBIIHJKJ_00004 2201 3 Skin 0.17 protein_coding synonymous_variant LOW 2139G>A Glu713Glu
M0089063 PBIIHJKJ_00004 2210 3 Skin 0.17 protein_coding synonymous_variant LOW 2130A>G Val710Val
M0089064 PBIIHJKJ_00004 2213 3 Skin 0.17 protein_coding synonymous_variant LOW 2127T>C Asp709Asp
M0089065 PBIIHJKJ_00004 2225 3 Skin 0.17 protein_coding synonymous_variant LOW 2115A>C Gly705Gly
M0089066 PBIIHJKJ_00004 2261 3 Skin 0.17 protein_coding synonymous_variant LOW 2079T>G Pro693Pro
M0089067 PBIIHJKJ_00004 2267 3 Skin 0.17 protein_coding synonymous_variant LOW 2073T>C Asp691Asp
M0089068 PBIIHJKJ_00004 2300 3 Skin 0.17 protein_coding synonymous_variant LOW 2040G>C Arg680Arg
M0089069 PBIIHJKJ_00009 6583 3 Skin 0.17 protein_coding missense_variant MODERATE 1097C>T Ala366Val
M0089070 PBIIHJKJ_00004 3935 3 Skin 0.17 protein_coding synonymous_variant LOW 405G>A Glu135Glu
M0089071 PBIIHJKJ_00004 3938 3 Skin 0.17 protein_coding synonymous_variant LOW 402C>G Pro134Pro
M0089072 PBIIHJKJ_00004 3941 3 Skin 0.17 protein_coding synonymous_variant LOW 399T>C Asn133Asn
M0089073 PBIIHJKJ_00004 3952 3 Skin 0.17 protein_coding missense_variant MODERATE 388G>A Asp130Asn
M0089074 PBIIHJKJ_00004 3953 3 Skin 0.17 protein_coding synonymous_variant LOW 387T>C Asp129Asp
M0089075 PBIIHJKJ_00004 4097 3 Skin 0.17 protein_coding synonymous_variant LOW 243G>A Pro81Pro
M0089076 PBIIHJKJ_00004 4105 3 Skin 0.17 protein_coding missense_variant MODERATE 235T>C Ser79Pro
M0089077 PBIIHJKJ_00004 4121 3 Skin 0.17 protein_coding synonymous_variant LOW 219T>C His73His
M0089078 PBIIHJKJ_00004 4128 3 Skin 0.17 protein_coding missense_variant MODERATE 212G>A Arg71His
M0089079 PBIIHJKJ_00004 4129 3 Skin 0.17 protein_coding missense_variant MODERATE 211C>G Arg71Gly
M0089080 PBIIHJKJ_00004 4207 3 Skin 0.17 protein_coding missense_variant MODERATE 133G>A Glu45Lys
M0089081 PBIIHJKJ_00004 4250 3 Skin 0.17 protein_coding synonymous_variant LOW 90C>T Pro30Pro
M0089082 PBIIHJKJ_00004 4283 3 Skin 0.17 protein_coding synonymous_variant LOW 57T>C Cys19Cys
M0089083 PBIIHJKJ_00004 4289 3 Skin 0.17 protein_coding synonymous_variant LOW 51C>T His17His
M0089084 PBIIHJKJ_00003 4365 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2522G>A None
M0089085 PBIIHJKJ_00005 4424 3 Skin 0.17 protein_coding missense_variant MODERATE 190A>G Thr64Ala
M0089086 PBIIHJKJ_00005 4593 3 Skin 0.17 protein_coding synonymous_variant LOW 21C>T Asn7Asn
M0089087 PBIIHJKJ_00005 4596 3 Skin 0.17 protein_coding synonymous_variant LOW 18C>A Pro6Pro
M0089088 PBIIHJKJ_00005 4608 3 Skin 0.17 protein_coding synonymous_variant LOW 6C>T Arg2Arg
M0089089 PBIIHJKJ_00006 4653 3 Skin 0.17 protein_coding synonymous_variant LOW 18G>A Glu6Glu
M0089090 PBIIHJKJ_00006 4756 3 Skin 0.17 protein_coding missense_variant MODERATE 121A>G Ile41Val
M0089091 PBIIHJKJ_00006 4774 3 Skin 0.17 protein_coding missense_variant MODERATE 139G>T Val47Phe
M0089092 PBIIHJKJ_00006 4811 3 Skin 0.17 protein_coding missense_variant MODERATE 176C>T Ala59Val
M0089093 PBIIHJKJ_00006 4992 3 Skin 0.17 protein_coding synonymous_variant LOW 357C>T His119His
M0089094 PBIIHJKJ_00006 5020 3 Skin 0.17 protein_coding missense_variant MODERATE 385A>G Ile129Val
M0089095 PBIIHJKJ_00006 5039 3 Skin 0.17 protein_coding missense_variant MODERATE 404C>T Ala135Val
M0089096 PBIIHJKJ_00009 6750 3 Skin 0.17 protein_coding synonymous_variant LOW 930G>T Ala310Ala
M0089097 PBIIHJKJ_00009 6762 3 Skin 0.17 protein_coding synonymous_variant LOW 918C>T Pro306Pro
M0089098 PBIIHJKJ_00009 6819 3 Skin 0.17 protein_coding missense_variant MODERATE 861A>C Lys287Asn
M0089099 PBIIHJKJ_00009 6820 3 Skin 0.17 protein_coding missense_variant MODERATE 860A>C Lys287Thr
M0089100 PBIIHJKJ_00009 6821 3 Skin 0.17 protein_coding missense_variant MODERATE 859A>C Lys287Gln
M0089101 PBIIHJKJ_00009 6829 3 Skin 0.17 protein_coding missense_variant MODERATE 851C>A Ala284Glu
M0089102 PBIIHJKJ_00009 6846 3 Skin 0.17 protein_coding synonymous_variant LOW 834C>G Val278Val
M0089103 PBIIHJKJ_00009 6864 3 Skin 0.17 protein_coding synonymous_variant LOW 816C>G Ala272Ala
M0089104 PBIIHJKJ_00009 6900 3 Skin 0.17 protein_coding synonymous_variant LOW 780C>G Ala260Ala
M0089105 PBIIHJKJ_00009 6939 3 Skin 0.17 protein_coding synonymous_variant LOW 741C>T Arg247Arg
M0089106 PBIIHJKJ_00009 6942 3 Skin 0.17 protein_coding synonymous_variant LOW 738A>G Glu246Glu
M0089107 PBIIHJKJ_00009 6948 3 Skin 0.17 protein_coding synonymous_variant LOW 732C>G Ala244Ala
M0089108 PBIIHJKJ_00009 6963 3 Skin 0.17 protein_coding synonymous_variant LOW 717T>C Asp239Asp
M0089109 PBIIHJKJ_00009 6966 3 Skin 0.17 protein_coding synonymous_variant LOW 714C>G Ala238Ala
M0089110 PBIIHJKJ_00009 6969 3 Skin 0.17 protein_coding synonymous_variant LOW 711T>G Leu237Leu
M0089111 PBIIHJKJ_00009 6993 3 Skin 0.17 protein_coding synonymous_variant LOW 687C>T Ala229Ala
M0089112 PBIIHJKJ_00009 7608 4 Skin 0.22 protein_coding synonymous_variant LOW 72A>T Leu24Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
PBIIHJKJ_00004 Copper (Cu), Sodium acetate [class: Acetate] 78.5 2.8e-310 94 799 0.8836 0.9351 prediction
PBIIHJKJ_00009 Copper (Cu) 100 6e-287 1 494 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PBIIHJKJ_00016 ARC39080.1|GT2|GT4 100 0 1 1099 1 0.8377
PBIIHJKJ_00029 ARC39091.1|GT2 100 0 1 1499 1 1
PBIIHJKJ_00030 ARC39092.2|GT0 100 0 1 452 1 0.9187





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term