Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C493
  Reference Plasmid   NZ_CP024178.1
  Reference Plasmid Size   97456
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0089223 HDGPGLAC_00022 22110 3 Skin 0.05 protein_coding synonymous_variant LOW 549A>G Leu183Leu
M0089224 HDGPGLAC_00022 22114 3 Skin 0.05 protein_coding synonymous_variant LOW 553C>T Leu185Leu
M0089225 HDGPGLAC_00022 22188 3 Skin 0.05 protein_coding synonymous_variant LOW 627T>C Ser209Ser
M0089226 HDGPGLAC_00022 22206 3 Skin 0.05 protein_coding synonymous_variant LOW 645G>A Lys215Lys
M0089227 HDGPGLAC_00022 22400 3 Skin 0.05 protein_coding stop_gained HIGH 839G>A Trp280*
M0089228 HDGPGLAC_00016 15436 3 Skin 0.05 protein_coding synonymous_variant LOW 162G>A Leu54Leu
M0089229 HDGPGLAC_00016 15438 3 Skin 0.05 protein_coding synonymous_variant LOW 160T>C Leu54Leu
M0089230 HDGPGLAC_00016 15459 3 Skin 0.05 protein_coding missense_variant MODERATE 139T>C Cys47Arg
M0089231 HDGPGLAC_00017 16233 4 Skin 0.07 protein_coding missense_variant MODERATE 806G>A Ser269Asn
M0089232 HDGPGLAC_00017 16237 5 Skin 0.09 protein_coding missense_variant MODERATE 802A>G Ile268Val
M0089233 HDGPGLAC_00017 16396 3 Skin 0.05 protein_coding missense_variant MODERATE 643C>A Leu215Ile
M0089234 HDGPGLAC_00017 16400 3 Skin 0.05 protein_coding missense_variant MODERATE 639G>T Leu213Phe
M0089235 HDGPGLAC_00017 16403 3 Skin 0.05 protein_coding synonymous_variant LOW 636C>T Cys212Cys
M0089236 HDGPGLAC_00019 18143 8 Skin 0.14 protein_coding synonymous_variant LOW 918A>C Ile306Ile
M0089237 HDGPGLAC_00019 18352 5 Skin 0.09 protein_coding missense_variant MODERATE 709C>A Leu237Ile
M0089238 HDGPGLAC_00013 9379 3 Skin 0.05 protein_coding missense_variant MODERATE 1525A>C Thr509Pro
M0089239 HDGPGLAC_00013 9383 3 Skin 0.05 protein_coding missense_variant MODERATE 1521C>G Asn507Lys
M0089240 HDGPGLAC_00013 9388 3 Skin 0.05 protein_coding missense_variant MODERATE 1516C>T Leu506Phe
M0089241 HDGPGLAC_00013 9447 3 Skin 0.05 protein_coding missense_variant MODERATE 1457C>G Thr486Ser
M0089242 HDGPGLAC_00013 9473 5 Skin 0.09 protein_coding synonymous_variant LOW 1431C>T Gly477Gly
M0089243 HDGPGLAC_00013 9522 5 Skin 0.09 protein_coding missense_variant MODERATE 1382C>T Ala461Val
M0089244 HDGPGLAC_00013 9524 5 Skin 0.09 protein_coding synonymous_variant LOW 1380G>A Gly460Gly
M0089245 HDGPGLAC_00010 10969 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4589T>G None
M0089246 HDGPGLAC_00010 10998 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4618C>T None
M0089247 HDGPGLAC_00010 11000 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4620A>T None
M0089248 HDGPGLAC_00010 11017 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4637G>T None
M0089249 HDGPGLAC_00014 11031 3 Skin 0.05 protein_coding missense_variant MODERATE 620A>G Glu207Gly
M0089250 HDGPGLAC_00014 11036 3 Skin 0.05 protein_coding missense_variant MODERATE 615G>A Met205Ile
M0089251 HDGPGLAC_00014 11069 3 Skin 0.05 protein_coding synonymous_variant LOW 582A>G Gln194Gln
M0089252 HDGPGLAC_00014 11112 3 Skin 0.05 protein_coding missense_variant MODERATE 539C>T Ser180Leu
M0089253 HDGPGLAC_00014 11124 3 Skin 0.05 protein_coding missense_variant MODERATE 527T>G Phe176Cys
M0089254 HDGPGLAC_00015 11799 3 Skin 0.05 protein_coding missense_variant MODERATE 1952C>A Thr651Asn
M0089255 HDGPGLAC_00015 11809 4 Skin 0.07 protein_coding missense_variant MODERATE 1942A>G Lys648Glu
M0089256 HDGPGLAC_00015 11960 6 Skin 0.10 protein_coding synonymous_variant LOW 1791A>G Val597Val
M0089257 HDGPGLAC_00015 11992 6 Skin 0.10 protein_coding missense_variant MODERATE 1759G>C Val587Leu
M0089258 HDGPGLAC_00015 12000 6 Skin 0.10 protein_coding missense_variant MODERATE 1751T>C Ile584Thr
M0089259 HDGPGLAC_00015 12116 5 Skin 0.09 protein_coding synonymous_variant LOW 1635G>A Leu545Leu
M0089260 HDGPGLAC_00015 12140 5 Skin 0.09 protein_coding synonymous_variant LOW 1611A>G Gln537Gln
M0089261 HDGPGLAC_00015 12245 6 Skin 0.10 protein_coding synonymous_variant LOW 1506A>G Ala502Ala
M0089262 HDGPGLAC_00015 12269 4 Skin 0.07 protein_coding synonymous_variant LOW 1482A>G Arg494Arg
M0089263 HDGPGLAC_00015 12331 5 Skin 0.09 protein_coding missense_variant MODERATE 1420T>C Tyr474His
M0089264 HDGPGLAC_00015 12341 4 Skin 0.07 protein_coding synonymous_variant LOW 1410T>C Ser470Ser
M0089265 HDGPGLAC_00015 12358 4 Skin 0.07 protein_coding missense_variant MODERATE 1393C>T Leu465Phe
M0089266 HDGPGLAC_00015 12367 4 Skin 0.07 protein_coding missense_variant MODERATE 1384A>G Thr462Ala
M0089267 HDGPGLAC_00015 12406 4 Skin 0.07 protein_coding missense_variant MODERATE 1345A>G Ile449Val
M0089268 HDGPGLAC_00015 12410 4 Skin 0.07 protein_coding synonymous_variant LOW 1341C>A Leu447Leu
M0089269 HDGPGLAC_00015 12453 4 Skin 0.07 protein_coding missense_variant MODERATE 1298G>A Ser433Asn
M0089270 HDGPGLAC_00015 12470 4 Skin 0.07 protein_coding synonymous_variant LOW 1281G>A Gly427Gly
M0089271 HDGPGLAC_00015 12487 6 Skin 0.10 protein_coding missense_variant MODERATE 1264G>A Ala422Thr
M0089272 HDGPGLAC_00015 12523 4 Skin 0.07 protein_coding missense_variant MODERATE 1228G>A Ala410Thr
M0089273 HDGPGLAC_00015 12534 4 Skin 0.07 protein_coding missense_variant MODERATE 1217C>T Ala406Val
M0089274 HDGPGLAC_00015 12542 4 Skin 0.07 protein_coding synonymous_variant LOW 1209G>A Thr403Thr
M0089275 HDGPGLAC_00015 12593 4 Skin 0.07 protein_coding synonymous_variant LOW 1158T>C Leu386Leu
M0089276 HDGPGLAC_00015 12623 4 Skin 0.07 protein_coding synonymous_variant LOW 1128A>G Ala376Ala
M0089277 HDGPGLAC_00015 12649 4 Skin 0.07 protein_coding missense_variant MODERATE 1102A>G Thr368Ala
M0089278 HDGPGLAC_00015 12665 4 Skin 0.07 protein_coding missense_variant MODERATE 1086C>G Ser362Arg
M0089279 HDGPGLAC_00015 12689 4 Skin 0.07 protein_coding synonymous_variant LOW 1062C>T Ser354Ser
M0089280 HDGPGLAC_00015 12716 4 Skin 0.07 protein_coding synonymous_variant LOW 1035G>A Gln345Gln
M0089281 HDGPGLAC_00015 12802 6 Skin 0.10 protein_coding missense_variant MODERATE 949A>G Ile317Val
M0089282 HDGPGLAC_00015 12844 6 Skin 0.10 protein_coding missense_variant MODERATE 907G>A Val303Met
M0089283 HDGPGLAC_00015 12851 6 Skin 0.10 protein_coding synonymous_variant LOW 900T>C Asn300Asn
M0089284 HDGPGLAC_00015 12890 5 Skin 0.09 protein_coding synonymous_variant LOW 861T>C Ala287Ala
M0089285 HDGPGLAC_00015 12920 3 Skin 0.05 protein_coding synonymous_variant LOW 831C>T Gly277Gly
M0089286 HDGPGLAC_00015 12930 3 Skin 0.05 protein_coding missense_variant MODERATE 821A>G Tyr274Cys
M0089287 HDGPGLAC_00015 12952 5 Skin 0.09 protein_coding missense_variant MODERATE 799C>A Leu267Ile
M0089288 HDGPGLAC_00015 13082 5 Skin 0.09 protein_coding synonymous_variant LOW 669T>G Ala223Ala
M0089289 HDGPGLAC_00015 13132 3 Skin 0.05 protein_coding missense_variant MODERATE 619G>A Val207Ile
M0089290 HDGPGLAC_00015 13136 5 Skin 0.09 protein_coding synonymous_variant LOW 615T>C Pro205Pro
M0089291 HDGPGLAC_00015 13268 3 Skin 0.05 protein_coding synonymous_variant LOW 483G>T Leu161Leu
M0089292 HDGPGLAC_00015 13293 5 Skin 0.09 protein_coding missense_variant MODERATE 458T>C Ile153Thr
M0089293 HDGPGLAC_00015 13355 4 Skin 0.07 protein_coding synonymous_variant LOW 396T>C Gly132Gly
M0089294 HDGPGLAC_00015 13370 4 Skin 0.07 protein_coding synonymous_variant LOW 381C>T Val127Val
M0089295 HDGPGLAC_00015 13404 5 Skin 0.09 protein_coding missense_variant MODERATE 347C>A Pro116His
M0089296 HDGPGLAC_00015 13652 4 Skin 0.07 protein_coding synonymous_variant LOW 99C>T Ser33Ser
M0089297 HDGPGLAC_00016 14560 5 Skin 0.09 protein_coding synonymous_variant LOW 1038A>G Val346Val
M0089298 HDGPGLAC_00016 15010 5 Skin 0.09 protein_coding synonymous_variant LOW 588T>C Val196Val
M0089299 HDGPGLAC_00016 15013 5 Skin 0.09 protein_coding synonymous_variant LOW 585G>T Ala195Ala
M0089300 HDGPGLAC_00016 15016 5 Skin 0.09 protein_coding synonymous_variant LOW 582A>G Leu194Leu
M0089301 HDGPGLAC_00016 15063 4 Skin 0.07 protein_coding missense_variant MODERATE 535G>T Asp179Tyr
M0089302 HDGPGLAC_00016 15070 4 Skin 0.07 protein_coding synonymous_variant LOW 528A>G Glu176Glu
M0089303 HDGPGLAC_00016 15075 4 Skin 0.07 protein_coding synonymous_variant LOW 523T>C Leu175Leu
M0089304 HDGPGLAC_00016 15082 4 Skin 0.07 protein_coding synonymous_variant LOW 516T>G Gly172Gly
M0089305 HDGPGLAC_00016 15085 4 Skin 0.07 protein_coding synonymous_variant LOW 513G>T Leu171Leu
M0089306 HDGPGLAC_00016 15214 4 Skin 0.07 protein_coding synonymous_variant LOW 384C>T Phe128Phe
M0089307 HDGPGLAC_00017 16018 4 Skin 0.07 protein_coding synonymous_variant LOW 1021C>T Leu341Leu
M0089308 HDGPGLAC_00017 16031 3 Skin 0.05 protein_coding synonymous_variant LOW 1008G>A Lys336Lys
M0089309 HDGPGLAC_00017 16070 4 Skin 0.07 protein_coding synonymous_variant LOW 969G>C Ala323Ala
M0089310 HDGPGLAC_00001 68 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -33A>G None
M0089311 HDGPGLAC_00001 197 7 Skin 0.12 protein_coding synonymous_variant LOW 97T>C Leu33Leu
M0089312 HDGPGLAC_00002 757 6 Skin 0.10 protein_coding synonymous_variant LOW 39G>A Val13Val
M0089313 HDGPGLAC_00002 826 5 Skin 0.09 protein_coding synonymous_variant LOW 108C>T Arg36Arg
M0089314 HDGPGLAC_00002 889 6 Skin 0.10 protein_coding synonymous_variant LOW 171G>A Arg57Arg
M0089315 HDGPGLAC_00002 1043 5 Skin 0.09 protein_coding missense_variant MODERATE 325A>G Lys109Glu
M0089316 HDGPGLAC_00003 1193 6 Skin 0.10 protein_coding synonymous_variant LOW 93G>A Val31Val
M0089317 HDGPGLAC_00003 1200 6 Skin 0.10 protein_coding missense_variant MODERATE 86A>G Lys29Arg
M0089318 HDGPGLAC_00003 1218 6 Skin 0.10 protein_coding missense_variant MODERATE 68A>G Asn23Ser
M0089319 HDGPGLAC_00003 1225 6 Skin 0.10 protein_coding missense_variant MODERATE 61G>A Gly21Arg
M0089320 HDGPGLAC_00003 1234 6 Skin 0.10 protein_coding missense_variant MODERATE 52C>A Gln18Lys
M0089321 HDGPGLAC_00003 1276 6 Skin 0.10 protein_coding missense_variant MODERATE 10C>G Gln4Glu
M0089322 HDGPGLAC_00003 1280 6 Skin 0.10 protein_coding synonymous_variant LOW 6C>T Ile2Ile
M0089323 HDGPGLAC_00003 1297 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -12T>C None
M0089324 HDGPGLAC_00003 1303 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -18A>G None
M0089325 HDGPGLAC_00004 1403 6 Skin 0.10 protein_coding missense_variant MODERATE 40A>C Ile14Leu
M0089326 HDGPGLAC_00004 1478 5 Skin 0.09 protein_coding missense_variant MODERATE 115G>A Gly39Arg
M0089327 HDGPGLAC_00004 1497 5 Skin 0.09 protein_coding missense_variant MODERATE 134A>G Lys45Arg
M0089328 HDGPGLAC_00004 1519 5 Skin 0.09 protein_coding synonymous_variant LOW 156C>T Tyr52Tyr
M0089329 HDGPGLAC_00004 1556 4 Skin 0.07 protein_coding missense_variant MODERATE 193A>C Lys65Gln
M0089330 HDGPGLAC_00004 1583 4 Skin 0.07 protein_coding missense_variant MODERATE 220T>A Tyr74Asn
M0089331 HDGPGLAC_00004 1611 4 Skin 0.07 protein_coding missense_variant MODERATE 248C>T Ser83Leu
M0089332 HDGPGLAC_00004 1613 3 Skin 0.05 protein_coding missense_variant MODERATE 250T>G Cys84Gly
M0089333 HDGPGLAC_00004 1624 4 Skin 0.07 protein_coding synonymous_variant LOW 261T>C His87His
M0089334 HDGPGLAC_00004 1635 3 Skin 0.05 protein_coding missense_variant MODERATE 272T>A Ile91Lys
M0089335 HDGPGLAC_00004 1637 3 Skin 0.05 protein_coding missense_variant MODERATE 274G>T Val92Phe
M0089336 HDGPGLAC_00004 1638 3 Skin 0.05 protein_coding missense_variant MODERATE 275T>A Val92Asp
M0089337 HDGPGLAC_00004 1639 3 Skin 0.05 protein_coding synonymous_variant LOW 276T>A Val92Val
M0089338 HDGPGLAC_00003 1658 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -373A>T None
M0089339 HDGPGLAC_00077 95444 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3921T>G None
M0089340 HDGPGLAC_00081 95914 3 Skin 0.05 protein_coding missense_variant MODERATE 394A>G Ile132Val
M0089341 HDGPGLAC_00081 96067 3 Skin 0.05 protein_coding synonymous_variant LOW 547C>T Leu183Leu
M0089342 HDGPGLAC_00081 96069 3 Skin 0.05 protein_coding synonymous_variant LOW 549G>A Leu183Leu
M0089343 HDGPGLAC_00081 96087 4 Skin 0.07 protein_coding synonymous_variant LOW 567A>G Val189Val
M0089344 HDGPGLAC_00081 96540 6 Skin 0.10 protein_coding synonymous_variant LOW 1020C>T Asp340Asp
M0089345 HDGPGLAC_00082 96848 6 Skin 0.10 protein_coding missense_variant MODERATE 73A>G Asn25Asp
M0089346 HDGPGLAC_00082 96917 6 Skin 0.10 protein_coding missense_variant MODERATE 4T>A Leu2Ile
M0089347 HDGPGLAC_00078 97001 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4404A>T None
M0089348 HDGPGLAC_00078 97043 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4446C>T None
M0089349 HDGPGLAC_00078 97068 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4471A>G None
M0089350 HDGPGLAC_00078 97099 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4502T>C None
M0089351 HDGPGLAC_00083 97302 6 Skin 0.10 protein_coding synonymous_variant LOW 175C>A Arg59Arg
M0089352 HDGPGLAC_00083 97318 6 Skin 0.10 protein_coding missense_variant MODERATE 191G>A Arg64Lys
M0089353 HDGPGLAC_00083 97358 7 Skin 0.12 protein_coding synonymous_variant LOW 231T>C Phe77Phe
M0089354 HDGPGLAC_00083 97361 7 Skin 0.12 protein_coding missense_variant MODERATE 234C>A Asp78Glu
M0089355 HDGPGLAC_00083 97381 7 Skin 0.12 protein_coding missense_variant MODERATE 254T>A Phe85Tyr
M0089356 HDGPGLAC_00083 97389 7 Skin 0.12 protein_coding missense_variant MODERATE 262A>G Ile88Val
M0089357 HDGPGLAC_00083 97402 7 Skin 0.12 protein_coding missense_variant MODERATE 275C>A Thr92Lys
M0089358 HDGPGLAC_00078 97407 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4810T>C None
M0089359 HDGPGLAC_00078 97413 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4816T>C None
M0089360 HDGPGLAC_00078 97426 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4829A>G None
M0089361 HDGPGLAC_00013 9235 5 Skin 0.09 protein_coding missense_variant MODERATE 1669G>T Val557Leu
M0089362 HDGPGLAC_00013 9236 5 Skin 0.09 protein_coding synonymous_variant LOW 1668A>G Arg556Arg
M0089363 HDGPGLAC_00013 9950 3 Skin 0.05 protein_coding synonymous_variant LOW 954C>T Tyr318Tyr
M0089364 HDGPGLAC_00013 9953 3 Skin 0.05 protein_coding synonymous_variant LOW 951C>T Asn317Asn
M0089365 HDGPGLAC_00013 9956 3 Skin 0.05 protein_coding synonymous_variant LOW 948T>A Leu316Leu
M0089366 HDGPGLAC_00015 11966 4 Skin 0.07 protein_coding synonymous_variant LOW 1785C>T Ile595Ile
M0089367 HDGPGLAC_00015 11996 4 Skin 0.07 protein_coding synonymous_variant LOW 1755G>A Glu585Glu
M0089368 HDGPGLAC_00015 12854 4 Skin 0.07 protein_coding synonymous_variant LOW 897G>A Leu299Leu
M0089369 HDGPGLAC_00015 12896 3 Skin 0.05 protein_coding synonymous_variant LOW 855C>T Thr285Thr
M0089370 HDGPGLAC_00016 14494 3 Skin 0.05 protein_coding synonymous_variant LOW 1104A>G Gln368Gln
M0089371 HDGPGLAC_00016 14986 3 Skin 0.05 protein_coding synonymous_variant LOW 612C>T Asn204Asn
M0089372 HDGPGLAC_00078 91794 3 Skin 0.05 protein_coding synonymous_variant LOW 804C>T Phe268Phe
M0089373 HDGPGLAC_00078 92175 3 Skin 0.05 protein_coding synonymous_variant LOW 423A>G Glu141Glu
M0089374 HDGPGLAC_00078 92264 3 Skin 0.05 protein_coding missense_variant MODERATE 334T>C Ser112Pro
M0089375 HDGPGLAC_00079 92841 3 Skin 0.05 protein_coding missense_variant MODERATE 361A>G Thr121Ala
M0089376 HDGPGLAC_00079 92874 3 Skin 0.05 protein_coding missense_variant MODERATE 328C>T Pro110Ser
M0089377 HDGPGLAC_00079 93021 3 Skin 0.05 protein_coding missense_variant MODERATE 181A>G Thr61Ala
M0089378 HDGPGLAC_00080 93222 3 Skin 0.05 protein_coding missense_variant MODERATE 1826T>C Met609Thr
M0089379 HDGPGLAC_00080 93272 3 Skin 0.05 protein_coding synonymous_variant LOW 1776T>C Leu592Leu
M0089380 HDGPGLAC_00080 93346 3 Skin 0.05 protein_coding missense_variant MODERATE 1702G>T Asp568Tyr
M0089381 HDGPGLAC_00020 19618 3 Skin 0.05 protein_coding missense_variant MODERATE 1244G>A Ser415Asn
M0089382 HDGPGLAC_00003 3308 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2023A>G None
M0089383 HDGPGLAC_00009 3418 5 Skin 0.09 protein_coding synonymous_variant LOW 1935C>T Tyr645Tyr
M0089384 HDGPGLAC_00009 3571 4 Skin 0.07 protein_coding synonymous_variant LOW 1782G>A Ala594Ala
M0089385 HDGPGLAC_00009 4414 4 Skin 0.07 protein_coding synonymous_variant LOW 939G>A Gln313Gln
M0089386 HDGPGLAC_00009 4489 3 Skin 0.05 protein_coding synonymous_variant LOW 864T>C Ser288Ser
M0089387 HDGPGLAC_00009 4561 3 Skin 0.05 protein_coding synonymous_variant LOW 792T>C Val264Val
M0089388 HDGPGLAC_00009 4798 3 Skin 0.05 protein_coding synonymous_variant LOW 555T>C Ser185Ser
M0089389 HDGPGLAC_00009 4912 4 Skin 0.07 protein_coding synonymous_variant LOW 441G>A Leu147Leu
M0089390 HDGPGLAC_00010 5427 6 Skin 0.10 protein_coding synonymous_variant LOW 954A>G Thr318Thr
M0089391 HDGPGLAC_00010 5439 4 Skin 0.07 protein_coding missense_variant MODERATE 942C>A His314Gln
M0089392 HDGPGLAC_00010 5962 6 Skin 0.10 protein_coding missense_variant MODERATE 419C>A Thr140Lys
M0089393 HDGPGLAC_00010 6198 4 Skin 0.07 protein_coding synonymous_variant LOW 183A>G Gly61Gly
M0089394 HDGPGLAC_00010 6253 5 Skin 0.09 protein_coding missense_variant MODERATE 128T>C Met43Thr
M0089395 HDGPGLAC_00010 6364 3 Skin 0.05 protein_coding missense_variant MODERATE 17T>A Leu6Gln
M0089396 HDGPGLAC_00010 6369 3 Skin 0.05 protein_coding synonymous_variant LOW 12C>T Thr4Thr
M0089397 HDGPGLAC_00011 6688 4 Skin 0.07 protein_coding synonymous_variant LOW 454T>C Leu152Leu
M0089398 HDGPGLAC_00011 6704 4 Skin 0.07 protein_coding synonymous_variant LOW 438G>T Ala146Ala
M0089399 HDGPGLAC_00011 6722 3 Skin 0.05 protein_coding synonymous_variant LOW 420T>C Gly140Gly
M0089400 HDGPGLAC_00011 6752 3 Skin 0.05 protein_coding synonymous_variant LOW 390G>A Lys130Lys
M0089401 HDGPGLAC_00011 6986 5 Skin 0.09 protein_coding synonymous_variant LOW 156A>G Leu52Leu
M0089402 HDGPGLAC_00012 7787 6 Skin 0.10 protein_coding missense_variant MODERATE 540C>A Asn180Lys
M0089403 HDGPGLAC_00012 7934 4 Skin 0.07 protein_coding synonymous_variant LOW 393G>A Gln131Gln
M0089404 HDGPGLAC_00012 7940 4 Skin 0.07 protein_coding synonymous_variant LOW 387G>A Pro129Pro
M0089405 HDGPGLAC_00012 7943 4 Skin 0.07 protein_coding synonymous_variant LOW 384G>A Leu128Leu
M0089406 HDGPGLAC_00012 8126 5 Skin 0.09 protein_coding synonymous_variant LOW 201C>T Phe67Phe
M0089407 HDGPGLAC_00012 8183 6 Skin 0.10 protein_coding synonymous_variant LOW 144A>G Leu48Leu
M0089408 HDGPGLAC_00009 8460 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3108C>G None
M0089409 HDGPGLAC_00013 8807 3 Skin 0.05 protein_coding synonymous_variant LOW 2097T>C Tyr699Tyr
M0089410 HDGPGLAC_00013 8815 3 Skin 0.05 protein_coding missense_variant MODERATE 2089G>A Glu697Lys
M0089411 HDGPGLAC_00013 8819 3 Skin 0.05 protein_coding synonymous_variant LOW 2085A>C Thr695Thr
M0089412 HDGPGLAC_00013 8825 3 Skin 0.05 protein_coding synonymous_variant LOW 2079C>T Gly693Gly
M0089413 HDGPGLAC_00013 9020 3 Skin 0.05 protein_coding synonymous_variant LOW 1884C>T Ala628Ala
M0089414 HDGPGLAC_00013 9272 3 Skin 0.05 protein_coding synonymous_variant LOW 1632C>T Asn544Asn
M0089415 HDGPGLAC_00013 9680 4 Skin 0.07 protein_coding synonymous_variant LOW 1224C>G Leu408Leu
M0089416 HDGPGLAC_00013 9704 3 Skin 0.05 protein_coding synonymous_variant LOW 1200C>A Pro400Pro
M0089417 HDGPGLAC_00013 9707 4 Skin 0.07 protein_coding synonymous_variant LOW 1197T>C Thr399Thr
M0089418 HDGPGLAC_00013 9733 4 Skin 0.07 protein_coding missense_variant MODERATE 1171A>G Met391Val
M0089419 HDGPGLAC_00013 9752 4 Skin 0.07 protein_coding synonymous_variant LOW 1152A>G Ser384Ser
M0089420 HDGPGLAC_00013 9786 3 Skin 0.05 protein_coding missense_variant MODERATE 1118A>T Lys373Ile
M0089421 HDGPGLAC_00013 9802 3 Skin 0.05 protein_coding missense_variant MODERATE 1102G>A Asp368Asn
M0089422 HDGPGLAC_00013 9841 3 Skin 0.05 protein_coding missense_variant MODERATE 1063C>G Pro355Ala
M0089423 HDGPGLAC_00013 9856 3 Skin 0.05 protein_coding missense_variant MODERATE 1048A>G Ile350Val
M0089424 HDGPGLAC_00013 9857 3 Skin 0.05 protein_coding synonymous_variant LOW 1047G>A Ser349Ser
M0089425 HDGPGLAC_00013 9865 3 Skin 0.05 protein_coding missense_variant MODERATE 1039C>T Pro347Ser
M0089426 HDGPGLAC_00013 9868 3 Skin 0.05 protein_coding missense_variant MODERATE 1036G>T Ala346Ser
M0089427 HDGPGLAC_00013 10070 3 Skin 0.05 protein_coding synonymous_variant LOW 834T>C Pro278Pro
M0089428 HDGPGLAC_00013 10103 3 Skin 0.05 protein_coding synonymous_variant LOW 801C>T Tyr267Tyr
M0089429 HDGPGLAC_00013 10124 3 Skin 0.05 protein_coding synonymous_variant LOW 780C>T Asn260Asn
M0089430 HDGPGLAC_00013 10140 3 Skin 0.05 protein_coding missense_variant MODERATE 764C>T Ala255Val
M0089431 HDGPGLAC_00013 10160 3 Skin 0.05 protein_coding synonymous_variant LOW 744C>T Asn248Asn
M0089432 HDGPGLAC_00013 10166 3 Skin 0.05 protein_coding synonymous_variant LOW 738C>T Ser246Ser
M0089433 HDGPGLAC_00013 10169 3 Skin 0.05 protein_coding synonymous_variant LOW 735G>A Leu245Leu
M0089434 HDGPGLAC_00013 10171 3 Skin 0.05 protein_coding synonymous_variant LOW 733T>C Leu245Leu
M0089435 HDGPGLAC_00013 10178 3 Skin 0.05 protein_coding synonymous_variant LOW 726T>C Thr242Thr
M0089436 HDGPGLAC_00013 10187 3 Skin 0.05 protein_coding synonymous_variant LOW 717A>G Leu239Leu
M0089437 HDGPGLAC_00013 10313 3 Skin 0.05 protein_coding synonymous_variant LOW 591T>G Ala197Ala
M0089438 HDGPGLAC_00013 10490 3 Skin 0.05 protein_coding synonymous_variant LOW 414G>A Lys138Lys
M0089439 HDGPGLAC_00013 10578 3 Skin 0.05 protein_coding missense_variant MODERATE 326A>G His109Arg
M0089440 HDGPGLAC_00016 14833 3 Skin 0.05 protein_coding synonymous_variant LOW 765A>G Leu255Leu
M0089441 HDGPGLAC_00019 17943 3 Skin 0.05 protein_coding missense_variant MODERATE 1118C>T Thr373Ile
M0089442 HDGPGLAC_00019 17944 3 Skin 0.05 protein_coding missense_variant MODERATE 1117A>G Thr373Ala
M0089443 HDGPGLAC_00019 18653 3 Skin 0.05 protein_coding synonymous_variant LOW 408T>C Cys136Cys
M0089444 HDGPGLAC_00019 18284 3 Skin 0.05 protein_coding synonymous_variant LOW 777C>T Phe259Phe
M0089445 HDGPGLAC_00001 166 3 Skin 0.05 protein_coding synonymous_variant LOW 66T>C Asn22Asn
M0089446 HDGPGLAC_00009 8537 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3185C>G None
M0089447 HDGPGLAC_00065 72937 3 Skin 0.05 protein_coding synonymous_variant LOW 471T>C His157His
M0089448 HDGPGLAC_00078 96644 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4047C>A None
M0089449 HDGPGLAC_00078 96700 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4103A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term