Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C494
  Reference Plasmid   NZ_CP024181.1
  Reference Plasmid Size   63733
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0089450 LDCAAIAJ_00064 59695 9 Skin 0.16 protein_coding synonymous_variant LOW 963T>C Asp321Asp
M0089451 LDCAAIAJ_00064 59860 7 Skin 0.12 protein_coding synonymous_variant LOW 798T>C Gly266Gly
M0089452 LDCAAIAJ_00064 59869 11 Skin 0.19 protein_coding synonymous_variant LOW 789T>C Phe263Phe
M0089453 LDCAAIAJ_00064 59908 5 Skin 0.09 protein_coding synonymous_variant LOW 750C>T Thr250Thr
M0089454 LDCAAIAJ_00064 59923 9 Skin 0.16 protein_coding synonymous_variant LOW 735C>T Asp245Asp
M0089455 LDCAAIAJ_00064 59957 11 Skin 0.19 protein_coding missense_variant MODERATE 701T>C Met234Thr
M0089456 LDCAAIAJ_00064 60148 9 Skin 0.16 protein_coding synonymous_variant LOW 510T>C Tyr170Tyr
M0089457 LDCAAIAJ_00064 60172 10 Skin 0.17 protein_coding synonymous_variant LOW 486G>A Glu162Glu
M0089458 LDCAAIAJ_00064 60298 10 Skin 0.17 protein_coding synonymous_variant LOW 360T>C Asp120Asp
M0089459 LDCAAIAJ_00064 60325 3 Skin 0.05 protein_coding synonymous_variant LOW 333C>T Asn111Asn
M0089460 LDCAAIAJ_00064 60571 5 Skin 0.09 protein_coding synonymous_variant LOW 87C>G Ala29Ala
M0089461 LDCAAIAJ_00058 60686 12 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4816C>T None
M0089462 LDCAAIAJ_00058 60745 10 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4875T>C None
M0089463 LDCAAIAJ_00058 60777 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4907C>A None
M0089464 LDCAAIAJ_00058 60799 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4929G>A None
M0089465 LDCAAIAJ_00058 60811 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4941C>T None
M0089466 LDCAAIAJ_00058 60814 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4944T>C None
M0089467 LDCAAIAJ_00058 60830 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4960A>G None
M0089468 LDCAAIAJ_00061 60880 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3400A>C None
M0089469 LDCAAIAJ_00061 60990 10 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3510A>G None
M0089470 LDCAAIAJ_00061 60991 13 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -3511C>G None
M0089471 LDCAAIAJ_00061 60998 9 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3518T>A None
M0089472 LDCAAIAJ_00061 61064 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3584A>G None
M0089473 LDCAAIAJ_00065 61096 10 Skin 0.17 protein_coding synonymous_variant LOW 771A>G Thr257Thr
M0089474 LDCAAIAJ_00065 61178 6 Skin 0.10 protein_coding missense_variant MODERATE 689G>C Arg230Thr
M0089475 LDCAAIAJ_00065 61591 11 Skin 0.19 protein_coding synonymous_variant LOW 276G>A Val92Val
M0089476 LDCAAIAJ_00065 61798 13 Skin 0.22 protein_coding synonymous_variant LOW 69A>G Val23Val
M0089477 LDCAAIAJ_00065 61822 7 Skin 0.12 protein_coding missense_variant MODERATE 45G>C Glu15Asp
M0089478 LDCAAIAJ_00065 61828 7 Skin 0.12 protein_coding synonymous_variant LOW 39C>T Ser13Ser
M0089479 LDCAAIAJ_00061 61880 13 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4400A>T None
M0089480 LDCAAIAJ_00064 59608 3 Skin 0.05 protein_coding synonymous_variant LOW 1050C>G Ala350Ala
M0089481 LDCAAIAJ_00064 59800 5 Skin 0.09 protein_coding synonymous_variant LOW 858G>A Leu286Leu
M0089482 LDCAAIAJ_00064 59980 3 Skin 0.05 protein_coding synonymous_variant LOW 678T>C Asp226Asp
M0089483 LDCAAIAJ_00064 60271 3 Skin 0.05 protein_coding missense_variant MODERATE 387C>A Asn129Lys
M0089484 LDCAAIAJ_00064 60393 4 Skin 0.07 protein_coding missense_variant MODERATE 265A>G Asn89Asp
M0089485 LDCAAIAJ_00064 60493 8 Skin 0.14 protein_coding synonymous_variant LOW 165T>C Ile55Ile
M0089486 LDCAAIAJ_00064 60516 4 Skin 0.07 protein_coding missense_variant MODERATE 142G>A Asp48Asn
M0089487 LDCAAIAJ_00064 60572 4 Skin 0.07 protein_coding missense_variant MODERATE 86C>T Ala29Val
M0089488 LDCAAIAJ_00064 60631 6 Skin 0.10 protein_coding synonymous_variant LOW 27T>C Thr9Thr
M0089489 LDCAAIAJ_00058 60715 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4845C>G None
M0089490 LDCAAIAJ_00058 60764 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4894C>G None
M0089491 LDCAAIAJ_00061 60905 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3425A>G None
M0089492 LDCAAIAJ_00061 60938 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3458C>G None
M0089493 LDCAAIAJ_00061 60943 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3463A>G None
M0089494 LDCAAIAJ_00061 60944 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3464T>G None
M0089495 LDCAAIAJ_00061 61992 7 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4512T>G None
M0089496 LDCAAIAJ_00061 61995 11 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4515T>A None
M0089497 LDCAAIAJ_00061 61998 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4518C>T None
M0089498 LDCAAIAJ_00061 62001 11 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4521A>G None
M0089499 LDCAAIAJ_00066 62159 5 Skin 0.09 protein_coding synonymous_variant LOW 558C>T Thr186Thr
M0089500 LDCAAIAJ_00041 41044 10 Skin 0.17 protein_coding missense_variant MODERATE 1739A>G Asp580Gly
M0089501 LDCAAIAJ_00041 41076 4 Skin 0.07 protein_coding synonymous_variant LOW 1707C>T Thr569Thr
M0089502 LDCAAIAJ_00041 41166 7 Skin 0.12 protein_coding synonymous_variant LOW 1617G>A Lys539Lys
M0089503 LDCAAIAJ_00041 41262 9 Skin 0.16 protein_coding synonymous_variant LOW 1521C>T Ser507Ser
M0089504 LDCAAIAJ_00041 41285 7 Skin 0.12 protein_coding missense_variant MODERATE 1498A>G Arg500Gly
M0089505 LDCAAIAJ_00041 41345 8 Skin 0.14 protein_coding missense_variant MODERATE 1438C>G Gln480Glu
M0089506 LDCAAIAJ_00041 41368 7 Skin 0.12 protein_coding missense_variant MODERATE 1415G>A Arg472Lys
M0089507 LDCAAIAJ_00041 41510 6 Skin 0.10 protein_coding missense_variant MODERATE 1273T>A Ser425Thr
M0089508 LDCAAIAJ_00041 41674 9 Skin 0.16 protein_coding missense_variant MODERATE 1109G>C Arg370Thr
M0089509 LDCAAIAJ_00041 41675 9 Skin 0.16 protein_coding missense_variant MODERATE 1108A>G Arg370Gly
M0089510 LDCAAIAJ_00041 41966 5 Skin 0.09 protein_coding missense_variant MODERATE 817C>T Pro273Ser
M0089511 LDCAAIAJ_00041 41976 7 Skin 0.12 protein_coding missense_variant MODERATE 807C>G Asp269Glu
M0089512 LDCAAIAJ_00041 41978 7 Skin 0.12 protein_coding missense_variant MODERATE 805G>A Asp269Asn
M0089513 LDCAAIAJ_00041 41980 9 Skin 0.16 protein_coding missense_variant MODERATE 803T>C Ile268Thr
M0089514 LDCAAIAJ_00041 41981 9 Skin 0.16 protein_coding missense_variant MODERATE 802A>G Ile268Val
M0089515 LDCAAIAJ_00041 42028 7 Skin 0.12 protein_coding missense_variant MODERATE 755C>A Pro252Gln
M0089516 LDCAAIAJ_00041 42233 3 Skin 0.05 protein_coding missense_variant MODERATE 550A>C Thr184Pro
M0089517 LDCAAIAJ_00041 42318 9 Skin 0.16 protein_coding synonymous_variant LOW 465A>G Ala155Ala
M0089518 LDCAAIAJ_00041 42382 8 Skin 0.14 protein_coding missense_variant MODERATE 401G>A Gly134Asp
M0089519 LDCAAIAJ_00041 42446 10 Skin 0.17 protein_coding missense_variant MODERATE 337T>C Ser113Pro
M0089520 LDCAAIAJ_00041 42470 6 Skin 0.10 protein_coding missense_variant MODERATE 313G>C Glu105Gln
M0089521 LDCAAIAJ_00041 42521 15 Skin 0.26 protein_coding missense_variant MODERATE 262T>C Tyr88His
M0089522 LDCAAIAJ_00041 42591 14 Skin 0.24 protein_coding synonymous_variant LOW 192C>A Gly64Gly
M0089523 LDCAAIAJ_00041 42613 13 Skin 0.22 protein_coding missense_variant MODERATE 170T>C Val57Ala
M0089524 LDCAAIAJ_00041 42665 12 Skin 0.21 protein_coding missense_variant MODERATE 118A>G Ile40Val
M0089525 LDCAAIAJ_00041 42768 5 Skin 0.09 protein_coding synonymous_variant LOW 15C>T Phe5Phe
M0089526 LDCAAIAJ_00058 60826 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4956C>A None
M0089527 LDCAAIAJ_00061 60989 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3509G>A None
M0089528 LDCAAIAJ_00061 61884 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4404C>T None
M0089529 LDCAAIAJ_00030 28495 3 Skin 0.05 protein_coding missense_variant MODERATE 629T>C Ile210Thr
M0089530 LDCAAIAJ_00030 28649 3 Skin 0.05 protein_coding synonymous_variant LOW 783G>C Gly261Gly
M0089531 LDCAAIAJ_00030 28743 3 Skin 0.05 protein_coding missense_variant MODERATE 877G>A Val293Ile
M0089532 LDCAAIAJ_00030 28752 3 Skin 0.05 protein_coding missense_variant MODERATE 886A>G Ile296Val
M0089533 LDCAAIAJ_00030 28773 3 Skin 0.05 protein_coding missense_variant MODERATE 907A>G Asn303Asp
M0089534 LDCAAIAJ_00030 28856 3 Skin 0.05 protein_coding synonymous_variant LOW 990A>G Val330Val
M0089535 LDCAAIAJ_00030 28857 3 Skin 0.05 protein_coding synonymous_variant LOW 991T>C Leu331Leu
M0089536 LDCAAIAJ_00030 28859 3 Skin 0.05 protein_coding synonymous_variant LOW 993G>A Leu331Leu
M0089537 LDCAAIAJ_00030 28860 3 Skin 0.05 protein_coding synonymous_variant LOW 994T>C Leu332Leu
M0089538 LDCAAIAJ_00030 28928 3 Skin 0.05 protein_coding synonymous_variant LOW 1062A>C Leu354Leu
M0089539 LDCAAIAJ_00030 28994 3 Skin 0.05 protein_coding synonymous_variant LOW 1128C>T Val376Val
M0089540 LDCAAIAJ_00030 29071 3 Skin 0.05 protein_coding missense_variant MODERATE 1205A>G Asn402Ser
M0089541 LDCAAIAJ_00030 29417 3 Skin 0.05 protein_coding synonymous_variant LOW 1551A>C Ala517Ala
M0089542 LDCAAIAJ_00030 30054 3 Skin 0.05 protein_coding missense_variant MODERATE 2188C>T His730Tyr
M0089543 LDCAAIAJ_00036 36152 3 Skin 0.05 protein_coding synonymous_variant LOW 1341C>T Thr447Thr
M0089544 LDCAAIAJ_00036 36464 3 Skin 0.05 protein_coding synonymous_variant LOW 1653T>C Ile551Ile
M0089545 LDCAAIAJ_00036 36566 3 Skin 0.05 protein_coding synonymous_variant LOW 1755C>T Val585Val
M0089546 LDCAAIAJ_00036 36923 3 Skin 0.05 protein_coding synonymous_variant LOW 2112T>A Pro704Pro
M0089547 LDCAAIAJ_00041 42644 3 Skin 0.05 protein_coding missense_variant MODERATE 139T>C Tyr47His
M0089548 LDCAAIAJ_00064 59704 6 Skin 0.10 protein_coding synonymous_variant LOW 954T>C Asp318Asp
M0089549 LDCAAIAJ_00061 61916 6 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4436G>T None
M0089550 LDCAAIAJ_00061 62005 8 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4525A>T None
M0089551 LDCAAIAJ_00061 62008 8 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4528C>G None
M0089552 LDCAAIAJ_00041 42219 4 Skin 0.07 protein_coding synonymous_variant LOW 564C>T Asn188Asn
M0089553 LDCAAIAJ_00001 1011 3 Skin 0.05 protein_coding missense_variant MODERATE 941A>G Asn314Ser
M0089554 LDCAAIAJ_00002 1281 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -50A>C None
M0089555 LDCAAIAJ_00002 1314 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -17T>A None
M0089556 LDCAAIAJ_00002 1339 3 Skin 0.05 protein_coding synonymous_variant LOW 9T>C Ile3Ile
M0089557 LDCAAIAJ_00003 2005 3 Skin 0.05 protein_coding missense_variant MODERATE 28A>G Ser10Gly
M0089558 LDCAAIAJ_00012 9796 5 Skin 0.09 protein_coding missense_variant MODERATE 623G>C Arg208Pro
M0089559 LDCAAIAJ_00012 10064 6 Skin 0.10 protein_coding synonymous_variant LOW 891T>C Val297Val
M0089560 LDCAAIAJ_00012 10349 3 Skin 0.05 protein_coding synonymous_variant LOW 1176T>C Cys392Cys
M0089561 LDCAAIAJ_00012 10400 4 Skin 0.07 protein_coding synonymous_variant LOW 1227C>A Ala409Ala
M0089562 LDCAAIAJ_00012 10556 4 Skin 0.07 protein_coding synonymous_variant LOW 1383T>C Val461Val
M0089563 LDCAAIAJ_00012 10739 5 Skin 0.09 protein_coding synonymous_variant LOW 1566G>T Ala522Ala
M0089564 LDCAAIAJ_00012 10745 5 Skin 0.09 protein_coding missense_variant MODERATE 1572T>G Asn524Lys
M0089565 LDCAAIAJ_00012 10844 6 Skin 0.10 protein_coding synonymous_variant LOW 1671A>G Ser557Ser
M0089566 LDCAAIAJ_00003 2247 4 Skin 0.07 protein_coding synonymous_variant LOW 270T>C Leu90Leu
M0089567 LDCAAIAJ_00004 2292 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -115A>C None
M0089568 LDCAAIAJ_00004 3063 3 Skin 0.05 protein_coding synonymous_variant LOW 657A>G Ala219Ala
M0089569 LDCAAIAJ_00004 3678 5 Skin 0.09 protein_coding synonymous_variant LOW 1272T>C Val424Val
M0089570 LDCAAIAJ_00004 3763 3 Skin 0.05 protein_coding missense_variant MODERATE 1357A>G Ile453Val
M0089571 LDCAAIAJ_00004 3815 4 Skin 0.07 protein_coding missense_variant MODERATE 1409C>A Ala470Asp
M0089572 LDCAAIAJ_00004 3875 4 Skin 0.07 protein_coding missense_variant MODERATE 1469C>A Thr490Lys
M0089573 LDCAAIAJ_00015 13335 4 Skin 0.07 protein_coding missense_variant MODERATE 741A>C Lys247Asn
M0089574 LDCAAIAJ_00015 13401 4 Skin 0.07 protein_coding synonymous_variant LOW 807C>T Arg269Arg
M0089575 LDCAAIAJ_00015 13404 4 Skin 0.07 protein_coding synonymous_variant LOW 810T>C Tyr270Tyr
M0089576 LDCAAIAJ_00015 13409 4 Skin 0.07 protein_coding missense_variant MODERATE 815T>C Ile272Thr
M0089577 LDCAAIAJ_00013 13750 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2113A>G None
M0089578 LDCAAIAJ_00016 14164 3 Skin 0.05 protein_coding synonymous_variant LOW 381G>A Leu127Leu
M0089579 LDCAAIAJ_00016 14169 3 Skin 0.05 protein_coding missense_variant MODERATE 386A>G Asn129Ser
M0089580 LDCAAIAJ_00016 14176 3 Skin 0.05 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0089581 LDCAAIAJ_00016 14180 3 Skin 0.05 protein_coding missense_variant MODERATE 397G>T Ala133Ser
M0089582 LDCAAIAJ_00016 14182 3 Skin 0.05 protein_coding synonymous_variant LOW 399T>A Ala133Ala
M0089583 LDCAAIAJ_00016 14201 3 Skin 0.05 protein_coding missense_variant MODERATE 418C>A Leu140Ile
M0089584 LDCAAIAJ_00016 15115 3 Skin 0.05 protein_coding synonymous_variant LOW 1332A>G Thr444Thr
M0089585 LDCAAIAJ_00016 15120 3 Skin 0.05 protein_coding missense_variant MODERATE 1337C>T Ala446Val
M0089586 LDCAAIAJ_00016 15124 3 Skin 0.05 protein_coding synonymous_variant LOW 1341G>A Leu447Leu
M0089587 LDCAAIAJ_00016 15127 3 Skin 0.05 protein_coding synonymous_variant LOW 1344T>C Pro448Pro
M0089588 LDCAAIAJ_00016 15136 3 Skin 0.05 protein_coding synonymous_variant LOW 1353C>T His451His
M0089589 LDCAAIAJ_00016 15137 3 Skin 0.05 protein_coding missense_variant MODERATE 1354A>G Ser452Gly
M0089590 LDCAAIAJ_00017 15867 4 Skin 0.07 protein_coding synonymous_variant LOW 318T>C Gly106Gly
M0089591 LDCAAIAJ_00017 15978 4 Skin 0.07 protein_coding synonymous_variant LOW 429G>A Val143Val
M0089592 LDCAAIAJ_00017 15983 4 Skin 0.07 protein_coding missense_variant MODERATE 434G>C Ser145Thr
M0089593 LDCAAIAJ_00017 15984 4 Skin 0.07 protein_coding synonymous_variant LOW 435T>C Ser145Ser
M0089594 LDCAAIAJ_00017 15990 4 Skin 0.07 protein_coding synonymous_variant LOW 441C>G Leu147Leu
M0089595 LDCAAIAJ_00037 40944 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2651G>A None
M0089596 LDCAAIAJ_00041 41738 3 Skin 0.05 protein_coding missense_variant MODERATE 1045A>G Lys349Glu
M0089597 LDCAAIAJ_00041 42279 5 Skin 0.09 protein_coding synonymous_variant LOW 504A>G Ala168Ala
M0089598 LDCAAIAJ_00041 42364 7 Skin 0.12 protein_coding missense_variant MODERATE 419G>C Gly140Ala
M0089599 LDCAAIAJ_00041 42406 3 Skin 0.05 protein_coding missense_variant MODERATE 377C>T Ser126Leu
M0089600 LDCAAIAJ_00041 42439 6 Skin 0.10 protein_coding missense_variant MODERATE 344A>C Lys115Thr
M0089601 LDCAAIAJ_00064 59737 3 Skin 0.05 protein_coding synonymous_variant LOW 921T>G Val307Val
M0089602 LDCAAIAJ_00065 61074 4 Skin 0.07 protein_coding missense_variant MODERATE 793C>T Leu265Phe
M0089603 LDCAAIAJ_00061 62027 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4547G>A None
M0089604 LDCAAIAJ_00041 41493 3 Skin 0.05 protein_coding missense_variant MODERATE 1290A>T Arg430Ser
M0089605 LDCAAIAJ_00041 42260 4 Skin 0.07 protein_coding missense_variant MODERATE 523G>A Asp175Asn
M0089606 LDCAAIAJ_00007 8653 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2720C>G None
M0089607 LDCAAIAJ_00012 9292 4 Skin 0.07 protein_coding missense_variant MODERATE 119A>G Gln40Arg
M0089608 LDCAAIAJ_00012 9326 4 Skin 0.07 protein_coding missense_variant MODERATE 153C>A Asn51Lys
M0089609 LDCAAIAJ_00012 9516 4 Skin 0.07 protein_coding missense_variant MODERATE 343G>A Ala115Thr
M0089610 LDCAAIAJ_00012 9521 3 Skin 0.05 protein_coding synonymous_variant LOW 348G>A Ala116Ala
M0089611 LDCAAIAJ_00004 2338 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -69C>G None
M0089612 LDCAAIAJ_00004 2371 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -36A>G None
M0089613 LDCAAIAJ_00064 60554 3 Skin 0.05 protein_coding missense_variant MODERATE 104T>C Ile35Thr
M0089614 LDCAAIAJ_00004 3378 3 Skin 0.05 protein_coding synonymous_variant LOW 972T>C Ala324Ala
M0089615 LDCAAIAJ_00065 61369 4 Skin 0.07 protein_coding synonymous_variant LOW 498A>G Lys166Lys
M0089616 LDCAAIAJ_00007 8406 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2473T>A None
M0089617 LDCAAIAJ_00007 8408 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2475T>C None
M0089618 LDCAAIAJ_00007 8409 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2476A>G None
M0089619 LDCAAIAJ_00007 8412 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2479G>T None
M0089620 LDCAAIAJ_00058 60687 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4817T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term