Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C499
  Reference Plasmid   NZ_CP024187.1
  Reference Plasmid Size   58284
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0091055 PIKELNBF_00001 145 3 Skin 0.06 protein_coding synonymous_variant LOW 45G>A Gly15Gly
M0091056 PIKELNBF_00001 197 4 Skin 0.08 protein_coding synonymous_variant LOW 97T>C Leu33Leu
M0091057 PIKELNBF_00002 757 4 Skin 0.08 protein_coding synonymous_variant LOW 39G>A Val13Val
M0091058 PIKELNBF_00002 826 4 Skin 0.08 protein_coding synonymous_variant LOW 108C>T Arg36Arg
M0091059 PIKELNBF_00002 889 3 Skin 0.06 protein_coding synonymous_variant LOW 171G>A Arg57Arg
M0091060 PIKELNBF_00002 1043 3 Skin 0.06 protein_coding missense_variant MODERATE 325A>G Lys109Glu
M0091061 PIKELNBF_00003 1193 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -498C>T None
M0091062 PIKELNBF_00003 1200 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -491T>C None
M0091063 PIKELNBF_00003 1218 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -473T>C None
M0091064 PIKELNBF_00003 1225 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -466C>T None
M0091065 PIKELNBF_00003 1234 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -457G>T None
M0091066 PIKELNBF_00003 1276 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -415G>C None
M0091067 PIKELNBF_00003 1280 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -411G>A None
M0091068 PIKELNBF_00003 1297 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -394A>G None
M0091069 PIKELNBF_00003 1303 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -388T>C None
M0091070 PIKELNBF_00003 1403 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -288A>C None
M0091071 PIKELNBF_00003 1478 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -213G>A None
M0091072 PIKELNBF_00003 1497 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -194A>G None
M0091073 PIKELNBF_00050 57676 3 Skin 0.06 protein_coding missense_variant MODERATE 73A>G Asn25Asp
M0091074 PIKELNBF_00050 57745 3 Skin 0.06 protein_coding missense_variant MODERATE 4T>A Leu2Ile
M0091075 PIKELNBF_00046 57871 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4446C>T None
M0091076 PIKELNBF_00046 57896 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4471A>G None
M0091077 PIKELNBF_00046 57927 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4502T>C None
M0091078 PIKELNBF_00012 11175 3 Skin 0.06 protein_coding missense_variant MODERATE 476A>C Asp159Ala
M0091079 PIKELNBF_00013 11960 4 Skin 0.08 protein_coding synonymous_variant LOW 1791A>G Val597Val
M0091080 PIKELNBF_00013 11966 4 Skin 0.08 protein_coding synonymous_variant LOW 1785C>T Ile595Ile
M0091081 PIKELNBF_00013 11992 4 Skin 0.08 protein_coding missense_variant MODERATE 1759G>C Val587Leu
M0091082 PIKELNBF_00013 11996 4 Skin 0.08 protein_coding synonymous_variant LOW 1755G>A Glu585Glu
M0091083 PIKELNBF_00013 12000 4 Skin 0.08 protein_coding missense_variant MODERATE 1751T>C Ile584Thr
M0091084 PIKELNBF_00013 12116 4 Skin 0.08 protein_coding synonymous_variant LOW 1635G>A Leu545Leu
M0091085 PIKELNBF_00013 12241 3 Skin 0.06 protein_coding missense_variant MODERATE 1510G>T Ala504Ser
M0091086 PIKELNBF_00013 12245 3 Skin 0.06 protein_coding synonymous_variant LOW 1506A>G Ala502Ala
M0091087 PIKELNBF_00013 12487 4 Skin 0.08 protein_coding missense_variant MODERATE 1264G>A Ala422Thr
M0091088 PIKELNBF_00001 3308 3 Skin 0.06 protein_coding downstream_gene_variant MODIFIER *2590T>C None
M0091089 PIKELNBF_00007 3418 7 Skin 0.13 protein_coding synonymous_variant LOW 1935C>T Tyr645Tyr
M0091090 PIKELNBF_00007 3571 3 Skin 0.06 protein_coding synonymous_variant LOW 1782G>A Ala594Ala
M0091091 PIKELNBF_00007 4798 3 Skin 0.06 protein_coding synonymous_variant LOW 555T>C Ser185Ser
M0091092 PIKELNBF_00007 4912 3 Skin 0.06 protein_coding synonymous_variant LOW 441G>A Leu147Leu
M0091093 PIKELNBF_00008 5427 9 Skin 0.17 protein_coding synonymous_variant LOW 954A>G Thr318Thr
M0091094 PIKELNBF_00008 5439 3 Skin 0.06 protein_coding missense_variant MODERATE 942C>A His314Gln
M0091095 PIKELNBF_00008 5962 8 Skin 0.15 protein_coding missense_variant MODERATE 419C>A Thr140Lys
M0091096 PIKELNBF_00008 6253 4 Skin 0.08 protein_coding missense_variant MODERATE 128T>C Met43Thr
M0091097 PIKELNBF_00008 6364 9 Skin 0.17 protein_coding missense_variant MODERATE 17T>A Leu6Gln
M0091098 PIKELNBF_00009 6688 4 Skin 0.08 protein_coding synonymous_variant LOW 454T>C Leu152Leu
M0091099 PIKELNBF_00009 6704 5 Skin 0.10 protein_coding synonymous_variant LOW 438G>T Ala146Ala
M0091100 PIKELNBF_00009 6722 4 Skin 0.08 protein_coding synonymous_variant LOW 420T>C Gly140Gly
M0091101 PIKELNBF_00009 6752 3 Skin 0.06 protein_coding synonymous_variant LOW 390G>A Lys130Lys
M0091102 PIKELNBF_00009 6986 6 Skin 0.12 protein_coding synonymous_variant LOW 156A>G Leu52Leu
M0091103 PIKELNBF_00010 7787 7 Skin 0.13 protein_coding missense_variant MODERATE 519C>A Asn173Lys
M0091104 PIKELNBF_00010 7920 3 Skin 0.06 protein_coding missense_variant MODERATE 386A>G Lys129Arg
M0091105 PIKELNBF_00010 7934 6 Skin 0.12 protein_coding synonymous_variant LOW 372G>A Gln124Gln
M0091106 PIKELNBF_00010 7940 6 Skin 0.12 protein_coding synonymous_variant LOW 366G>A Pro122Pro
M0091107 PIKELNBF_00010 7943 6 Skin 0.12 protein_coding synonymous_variant LOW 363G>A Leu121Leu
M0091108 PIKELNBF_00010 8126 7 Skin 0.13 protein_coding synonymous_variant LOW 180C>T Phe60Phe
M0091109 PIKELNBF_00010 8183 7 Skin 0.13 protein_coding synonymous_variant LOW 123A>G Leu41Leu
M0091110 PIKELNBF_00011 8615 3 Skin 0.06 protein_coding synonymous_variant LOW 2301T>C Gly767Gly
M0091111 PIKELNBF_00011 8807 3 Skin 0.06 protein_coding synonymous_variant LOW 2109T>C Tyr703Tyr
M0091112 PIKELNBF_00011 8815 3 Skin 0.06 protein_coding missense_variant MODERATE 2101G>A Glu701Lys
M0091113 PIKELNBF_00011 8819 3 Skin 0.06 protein_coding synonymous_variant LOW 2097A>C Thr699Thr
M0091114 PIKELNBF_00011 8825 3 Skin 0.06 protein_coding synonymous_variant LOW 2091C>T Gly697Gly
M0091115 PIKELNBF_00011 9950 3 Skin 0.06 protein_coding synonymous_variant LOW 966C>T Tyr322Tyr
M0091116 PIKELNBF_00011 9953 3 Skin 0.06 protein_coding synonymous_variant LOW 963C>T Asn321Asn
M0091117 PIKELNBF_00011 9956 3 Skin 0.06 protein_coding synonymous_variant LOW 960T>A Leu320Leu
M0091118 PIKELNBF_00013 12140 3 Skin 0.06 protein_coding synonymous_variant LOW 1611A>G Gln537Gln
M0091119 PIKELNBF_00013 12305 3 Skin 0.06 protein_coding synonymous_variant LOW 1446T>C Asp482Asp
M0091120 PIKELNBF_00013 12320 3 Skin 0.06 protein_coding synonymous_variant LOW 1431C>T Asp477Asp
M0091121 PIKELNBF_00013 12331 3 Skin 0.06 protein_coding missense_variant MODERATE 1420T>C Tyr474His
M0091122 PIKELNBF_00013 12757 5 Skin 0.10 protein_coding missense_variant MODERATE 994A>G Thr332Ala
M0091123 PIKELNBF_00013 12770 5 Skin 0.10 protein_coding synonymous_variant LOW 981A>G Glu327Glu
M0091124 PIKELNBF_00013 12802 5 Skin 0.10 protein_coding missense_variant MODERATE 949A>G Ile317Val
M0091125 PIKELNBF_00013 12811 5 Skin 0.10 protein_coding missense_variant MODERATE 940G>A Ala314Thr
M0091126 PIKELNBF_00013 12812 5 Skin 0.10 protein_coding synonymous_variant LOW 939T>C Ile313Ile
M0091127 PIKELNBF_00013 12844 5 Skin 0.10 protein_coding missense_variant MODERATE 907G>A Val303Met
M0091128 PIKELNBF_00013 12851 5 Skin 0.10 protein_coding synonymous_variant LOW 900T>C Asn300Asn
M0091129 PIKELNBF_00013 12854 5 Skin 0.10 protein_coding synonymous_variant LOW 897G>A Leu299Leu
M0091130 PIKELNBF_00013 12890 5 Skin 0.10 protein_coding synonymous_variant LOW 861T>C Ala287Ala
M0091131 PIKELNBF_00013 12896 5 Skin 0.10 protein_coding synonymous_variant LOW 855C>T Thr285Thr
M0091132 PIKELNBF_00013 12952 3 Skin 0.06 protein_coding missense_variant MODERATE 799C>A Leu267Ile
M0091133 PIKELNBF_00013 12978 3 Skin 0.06 protein_coding missense_variant MODERATE 773A>G Gln258Arg
M0091134 PIKELNBF_00013 13082 5 Skin 0.10 protein_coding synonymous_variant LOW 669T>G Ala223Ala
M0091135 PIKELNBF_00013 13094 5 Skin 0.10 protein_coding synonymous_variant LOW 657A>T Thr219Thr
M0091136 PIKELNBF_00013 13136 5 Skin 0.10 protein_coding synonymous_variant LOW 615T>C Pro205Pro
M0091137 PIKELNBF_00013 13229 5 Skin 0.10 protein_coding synonymous_variant LOW 522T>C Ser174Ser
M0091138 PIKELNBF_00013 13293 4 Skin 0.08 protein_coding missense_variant MODERATE 458T>C Ile153Thr
M0091139 PIKELNBF_00013 13351 5 Skin 0.10 protein_coding missense_variant MODERATE 400A>G Ser134Gly
M0091140 PIKELNBF_00013 13355 5 Skin 0.10 protein_coding synonymous_variant LOW 396T>C Gly132Gly
M0091141 PIKELNBF_00013 13357 5 Skin 0.10 protein_coding missense_variant MODERATE 394G>A Gly132Ser
M0091142 PIKELNBF_00013 13370 5 Skin 0.10 protein_coding synonymous_variant LOW 381C>T Val127Val
M0091143 PIKELNBF_00013 13375 5 Skin 0.10 protein_coding missense_variant MODERATE 376T>G Leu126Val
M0091144 PIKELNBF_00013 13404 4 Skin 0.08 protein_coding missense_variant MODERATE 347C>A Pro116His
M0091145 PIKELNBF_00013 13609 3 Skin 0.06 protein_coding synonymous_variant LOW 142C>T Leu48Leu
M0091146 PIKELNBF_00014 13926 3 Skin 0.06 protein_coding missense_variant MODERATE 1744T>C Tyr582His
M0091147 PIKELNBF_00014 14833 3 Skin 0.06 protein_coding synonymous_variant LOW 837A>G Leu279Leu
M0091148 PIKELNBF_00014 14986 3 Skin 0.06 protein_coding synonymous_variant LOW 684C>T Asn228Asn
M0091149 PIKELNBF_00014 15010 3 Skin 0.06 protein_coding synonymous_variant LOW 660T>C Val220Val
M0091150 PIKELNBF_00014 15013 3 Skin 0.06 protein_coding synonymous_variant LOW 657G>T Ala219Ala
M0091151 PIKELNBF_00014 15016 3 Skin 0.06 protein_coding synonymous_variant LOW 654A>G Leu218Leu
M0091152 PIKELNBF_00015 15929 3 Skin 0.06 protein_coding synonymous_variant LOW 1101C>T Val367Val
M0091153 PIKELNBF_00015 16018 7 Skin 0.13 protein_coding synonymous_variant LOW 1012C>T Leu338Leu
M0091154 PIKELNBF_00015 16070 6 Skin 0.12 protein_coding synonymous_variant LOW 960G>C Ala320Ala
M0091155 PIKELNBF_00015 16237 9 Skin 0.17 protein_coding missense_variant MODERATE 793A>G Ile265Val
M0091156 PIKELNBF_00015 16396 5 Skin 0.10 protein_coding missense_variant MODERATE 634C>A Leu212Ile
M0091157 PIKELNBF_00015 16400 5 Skin 0.10 protein_coding missense_variant MODERATE 630G>T Leu210Phe
M0091158 PIKELNBF_00015 16403 5 Skin 0.10 protein_coding synonymous_variant LOW 627C>T Cys209Cys
M0091159 PIKELNBF_00009 6467 3 Skin 0.06 protein_coding synonymous_variant LOW 675C>T Thr225Thr
M0091160 PIKELNBF_00009 6497 3 Skin 0.06 protein_coding synonymous_variant LOW 645G>A Lys215Lys
M0091161 PIKELNBF_00009 6539 7 Skin 0.13 protein_coding synonymous_variant LOW 603T>G Ser201Ser
M0091162 PIKELNBF_00010 7289 4 Skin 0.08 protein_coding synonymous_variant LOW 1017A>G Gln339Gln
M0091163 PIKELNBF_00010 7324 4 Skin 0.08 protein_coding missense_variant MODERATE 982G>A Gly328Arg
M0091164 PIKELNBF_00010 7742 4 Skin 0.08 protein_coding synonymous_variant LOW 564C>T Arg188Arg
M0091165 PIKELNBF_00010 8264 4 Skin 0.08 protein_coding synonymous_variant LOW 42T>C Ile14Ile
M0091166 PIKELNBF_00007 8537 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3185C>G None
M0091167 PIKELNBF_00013 13517 4 Skin 0.08 protein_coding synonymous_variant LOW 234A>C Ser78Ser
M0091168 PIKELNBF_00014 14278 4 Skin 0.08 protein_coding synonymous_variant LOW 1392C>T Ile464Ile
M0091169 PIKELNBF_00014 14281 4 Skin 0.08 protein_coding synonymous_variant LOW 1389T>C Ile463Ile
M0091170 PIKELNBF_00014 14311 4 Skin 0.08 protein_coding synonymous_variant LOW 1359T>G Gly453Gly
M0091171 PIKELNBF_00014 14312 4 Skin 0.08 protein_coding missense_variant MODERATE 1358G>A Gly453Asp
M0091172 PIKELNBF_00014 14350 4 Skin 0.08 protein_coding synonymous_variant LOW 1320T>C Asp440Asp
M0091173 PIKELNBF_00015 16233 8 Skin 0.15 protein_coding missense_variant MODERATE 797G>A Ser266Asn
M0091174 PIKELNBF_00017 17943 6 Skin 0.12 protein_coding missense_variant MODERATE 1118C>T Thr373Ile
M0091175 PIKELNBF_00017 17944 6 Skin 0.12 protein_coding missense_variant MODERATE 1117A>G Thr373Ala
M0091176 PIKELNBF_00017 17949 5 Skin 0.10 protein_coding missense_variant MODERATE 1112A>C Glu371Ala
M0091177 PIKELNBF_00017 18140 3 Skin 0.06 protein_coding synonymous_variant LOW 921T>C Gly307Gly
M0091178 PIKELNBF_00017 18143 8 Skin 0.15 protein_coding synonymous_variant LOW 918A>C Ile306Ile
M0091179 PIKELNBF_00017 18146 3 Skin 0.06 protein_coding synonymous_variant LOW 915C>T Thr305Thr
M0091180 PIKELNBF_00017 18352 4 Skin 0.08 protein_coding missense_variant MODERATE 709C>A Leu237Ile
M0091181 PIKELNBF_00033 34257 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -16T>C None
M0091182 PIKELNBF_00033 34309 4 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -68T>C None
M0091183 PIKELNBF_00033 34445 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -204T>A None
M0091184 PIKELNBF_00030 32362 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -7A>C None
M0091185 PIKELNBF_00030 32365 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4G>A None
M0091186 PIKELNBF_00030 32368 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1T>C None
M0091187 PIKELNBF_00030 32374 3 Skin 0.06 protein_coding synonymous_variant LOW 6T>A Thr2Thr
M0091188 PIKELNBF_00030 32400 3 Skin 0.06 protein_coding missense_variant MODERATE 32C>T Pro11Leu
M0091189 PIKELNBF_00030 32407 3 Skin 0.06 protein_coding synonymous_variant LOW 39G>A Gly13Gly
M0091190 PIKELNBF_00007 5128 3 Skin 0.06 protein_coding synonymous_variant LOW 225G>A Leu75Leu
M0091191 PIKELNBF_00008 6367 3 Skin 0.06 protein_coding missense_variant MODERATE 14G>A Ser5Asn
M0091192 PIKELNBF_00009 6505 3 Skin 0.06 protein_coding missense_variant MODERATE 637G>A Asp213Asn
M0091193 PIKELNBF_00012 11387 3 Skin 0.06 protein_coding synonymous_variant LOW 264A>G Leu88Leu
M0091194 PIKELNBF_00044 48692 4 Skin 0.08 protein_coding missense_variant MODERATE 2360G>A Gly787Glu
M0091195 PIKELNBF_00044 48747 4 Skin 0.08 protein_coding missense_variant MODERATE 2305G>A Gly769Ser
M0091196 PIKELNBF_00044 48874 4 Skin 0.08 protein_coding synonymous_variant LOW 2178A>C Thr726Thr
M0091197 PIKELNBF_00044 48912 3 Skin 0.06 protein_coding synonymous_variant LOW 2140T>C Leu714Leu
M0091198 PIKELNBF_00044 48991 4 Skin 0.08 protein_coding synonymous_variant LOW 2061G>C Thr687Thr
M0091199 PIKELNBF_00044 49042 4 Skin 0.08 protein_coding synonymous_variant LOW 2010C>T Leu670Leu
M0091200 PIKELNBF_00044 49060 4 Skin 0.08 protein_coding synonymous_variant LOW 1992T>C Gly664Gly
M0091201 PIKELNBF_00001 3153 3 Skin 0.06 protein_coding downstream_gene_variant MODIFIER *2435A>T None
M0091202 PIKELNBF_00001 3174 3 Skin 0.06 protein_coding downstream_gene_variant MODIFIER *2456A>T None
M0091203 PIKELNBF_00001 3182 5 Skin 0.10 protein_coding downstream_gene_variant MODIFIER *2464A>G None
M0091204 PIKELNBF_00007 3600 3 Skin 0.06 protein_coding synonymous_variant LOW 1753T>C Leu585Leu
M0091205 PIKELNBF_00007 3847 6 Skin 0.12 protein_coding synonymous_variant LOW 1506A>G Gly502Gly
M0091206 PIKELNBF_00007 5143 3 Skin 0.06 protein_coding synonymous_variant LOW 210A>G Leu70Leu
M0091207 PIKELNBF_00044 48688 3 Skin 0.06 protein_coding synonymous_variant LOW 2364G>A Leu788Leu
M0091208 PIKELNBF_00044 48690 3 Skin 0.06 protein_coding synonymous_variant LOW 2362T>C Leu788Leu
M0091209 PIKELNBF_00044 48694 3 Skin 0.06 protein_coding synonymous_variant LOW 2358C>T His786His
M0091210 PIKELNBF_00044 49186 3 Skin 0.06 protein_coding synonymous_variant LOW 1866G>A Glu622Glu
M0091211 PIKELNBF_00044 49900 3 Skin 0.06 protein_coding synonymous_variant LOW 1152T>C Ala384Ala
M0091212 PIKELNBF_00044 50017 3 Skin 0.06 protein_coding synonymous_variant LOW 1035A>G Val345Val
M0091213 PIKELNBF_00044 50128 3 Skin 0.06 protein_coding synonymous_variant LOW 924T>G Ser308Ser
M0091214 PIKELNBF_00044 50524 3 Skin 0.06 protein_coding synonymous_variant LOW 528T>C Ser176Ser
M0091215 PIKELNBF_00044 50824 3 Skin 0.06 protein_coding synonymous_variant LOW 228T>C Asn76Asn
M0091216 PIKELNBF_00044 50830 3 Skin 0.06 protein_coding synonymous_variant LOW 222C>A Leu74Leu
M0091217 PIKELNBF_00014 14494 4 Skin 0.08 protein_coding synonymous_variant LOW 1176A>G Gln392Gln
M0091218 PIKELNBF_00014 15253 3 Skin 0.06 protein_coding synonymous_variant LOW 417G>A Thr139Thr
M0091219 PIKELNBF_00014 15262 3 Skin 0.06 protein_coding missense_variant MODERATE 408A>C Glu136Asp
M0091220 PIKELNBF_00014 15305 4 Skin 0.08 protein_coding missense_variant MODERATE 365T>C Val122Ala
M0091221 PIKELNBF_00013 13505 3 Skin 0.06 protein_coding synonymous_variant LOW 246G>A Thr82Thr
M0091222 PIKELNBF_00014 14326 3 Skin 0.06 protein_coding missense_variant MODERATE 1344G>A Met448Ile
M0091223 PIKELNBF_00014 14327 3 Skin 0.06 protein_coding missense_variant MODERATE 1343T>C Met448Thr
M0091224 PIKELNBF_00014 14560 3 Skin 0.06 protein_coding synonymous_variant LOW 1110A>G Val370Val
M0091225 PIKELNBF_00015 16031 5 Skin 0.10 protein_coding synonymous_variant LOW 999G>A Lys333Lys
M0091226 PIKELNBF_00015 16165 3 Skin 0.06 protein_coding synonymous_variant LOW 865C>T Leu289Leu
M0091227 PIKELNBF_00033 38919 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4678T>C None
M0091228 PIKELNBF_00017 18653 3 Skin 0.06 protein_coding synonymous_variant LOW 408T>C Cys136Cys
M0091229 PIKELNBF_00049 57368 3 Skin 0.06 protein_coding synonymous_variant LOW 1020C>T Asp340Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term