Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C510
  Reference Plasmid   NZ_CP024444.1
  Reference Plasmid Size   271709
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0091658 GCCNIEBJ_00046 37945 7 Skin 0.07 protein_coding missense_variant MODERATE 1113C>G Asp371Glu
M0091659 GCCNIEBJ_00046 38470 6 Skin 0.06 protein_coding synonymous_variant LOW 588T>C Asp196Asp
M0091660 GCCNIEBJ_00046 38491 11 Skin 0.11 protein_coding synonymous_variant LOW 567A>G Thr189Thr
M0091661 GCCNIEBJ_00046 38493 11 Skin 0.11 protein_coding missense_variant MODERATE 565A>T Thr189Ser
M0091662 GCCNIEBJ_00046 38530 11 Skin 0.11 protein_coding synonymous_variant LOW 528T>G Ser176Ser
M0091663 GCCNIEBJ_00046 38536 11 Skin 0.11 protein_coding synonymous_variant LOW 522G>T Gly174Gly
M0091664 GCCNIEBJ_00046 38554 9 Skin 0.09 protein_coding synonymous_variant LOW 504C>A Ala168Ala
M0091665 GCCNIEBJ_00046 38566 9 Skin 0.09 protein_coding synonymous_variant LOW 492A>G Ala164Ala
M0091666 GCCNIEBJ_00046 38571 9 Skin 0.09 protein_coding missense_variant MODERATE 487T>A Leu163Met
M0091667 GCCNIEBJ_00046 38596 12 Skin 0.12 protein_coding synonymous_variant LOW 462T>C Ser154Ser
M0091668 GCCNIEBJ_00046 38614 10 Skin 0.10 protein_coding synonymous_variant LOW 444A>G Pro148Pro
M0091669 GCCNIEBJ_00046 38623 12 Skin 0.12 protein_coding synonymous_variant LOW 435T>C Gly145Gly
M0091670 GCCNIEBJ_00046 38633 11 Skin 0.11 protein_coding missense_variant MODERATE 425G>A Ser142Asn
M0091671 GCCNIEBJ_00046 38641 6 Skin 0.06 protein_coding synonymous_variant LOW 417T>C Gly139Gly
M0091672 GCCNIEBJ_00046 38650 6 Skin 0.06 protein_coding synonymous_variant LOW 408C>T Phe136Phe
M0091673 GCCNIEBJ_00048 40330 7 Skin 0.07 protein_coding missense_variant MODERATE 517T>G Ser173Ala
M0091674 GCCNIEBJ_00048 40335 7 Skin 0.07 protein_coding missense_variant MODERATE 512G>C Arg171Pro
M0091675 GCCNIEBJ_00048 40343 10 Skin 0.10 protein_coding missense_variant MODERATE 504C>A Asn168Lys
M0091676 GCCNIEBJ_00048 40345 10 Skin 0.10 protein_coding missense_variant MODERATE 502A>C Asn168His
M0091677 GCCNIEBJ_00048 40363 8 Skin 0.08 protein_coding missense_variant MODERATE 484A>G Asn162Asp
M0091678 GCCNIEBJ_00048 40391 5 Skin 0.05 protein_coding synonymous_variant LOW 456T>C Asp152Asp
M0091679 GCCNIEBJ_00048 40400 12 Skin 0.12 protein_coding missense_variant MODERATE 447A>C Lys149Asn
M0091680 GCCNIEBJ_00048 40445 8 Skin 0.08 protein_coding synonymous_variant LOW 402T>C Tyr134Tyr
M0091681 GCCNIEBJ_00048 40589 10 Skin 0.10 protein_coding missense_variant MODERATE 258C>G Ile86Met
M0091682 GCCNIEBJ_00048 40610 9 Skin 0.09 protein_coding synonymous_variant LOW 237T>C Ile79Ile
M0091683 GCCNIEBJ_00048 40658 6 Skin 0.06 protein_coding missense_variant MODERATE 189A>G Ile63Met
M0091684 GCCNIEBJ_00048 40661 6 Skin 0.06 protein_coding synonymous_variant LOW 186A>G Glu62Glu
M0091685 GCCNIEBJ_00048 40772 8 Skin 0.08 protein_coding missense_variant MODERATE 75T>A His25Gln
M0091686 GCCNIEBJ_00045 40907 9 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3375C>T None
M0091687 GCCNIEBJ_00049 42224 4 Skin 0.04 protein_coding synonymous_variant LOW 1158C>T Ser386Ser
M0091688 GCCNIEBJ_00049 42227 3 Skin 0.03 protein_coding synonymous_variant LOW 1161T>C Gly387Gly
M0091689 GCCNIEBJ_00049 42233 3 Skin 0.03 protein_coding synonymous_variant LOW 1167A>G Ala389Ala
M0091690 GCCNIEBJ_00049 42298 3 Skin 0.03 protein_coding missense_variant MODERATE 1232A>G Gln411Arg
M0091691 GCCNIEBJ_00049 42320 3 Skin 0.03 protein_coding synonymous_variant LOW 1254G>A Gln418Gln
M0091692 GCCNIEBJ_00049 42446 3 Skin 0.03 protein_coding synonymous_variant LOW 1380T>C Tyr460Tyr
M0091693 GCCNIEBJ_00049 42450 3 Skin 0.03 protein_coding synonymous_variant LOW 1384C>T Leu462Leu
M0091694 GCCNIEBJ_00049 42461 3 Skin 0.03 protein_coding synonymous_variant LOW 1395G>A Glu465Glu
M0091695 GCCNIEBJ_00049 42494 4 Skin 0.04 protein_coding synonymous_variant LOW 1428A>T Gly476Gly
M0091696 GCCNIEBJ_00049 42495 4 Skin 0.04 protein_coding missense_variant MODERATE 1429G>A Val477Ile
M0091697 GCCNIEBJ_00049 42500 4 Skin 0.04 protein_coding synonymous_variant LOW 1434C>T Gly478Gly
M0091698 GCCNIEBJ_00049 42503 4 Skin 0.04 protein_coding synonymous_variant LOW 1437C>T Asn479Asn
M0091699 GCCNIEBJ_00049 42506 4 Skin 0.04 protein_coding synonymous_variant LOW 1440A>C Gly480Gly
M0091700 GCCNIEBJ_00049 42546 4 Skin 0.04 protein_coding missense_variant MODERATE 1480G>C Asp494His
M0091701 GCCNIEBJ_00049 42563 3 Skin 0.03 protein_coding synonymous_variant LOW 1497T>C Ile499Ile
M0091702 GCCNIEBJ_00049 42566 3 Skin 0.03 protein_coding synonymous_variant LOW 1500G>A Glu500Glu
M0091703 GCCNIEBJ_00173 158466 3 Skin 0.03 protein_coding missense_variant MODERATE 1283G>A Arg428Lys
M0091704 GCCNIEBJ_00173 158539 3 Skin 0.03 protein_coding synonymous_variant LOW 1356G>C Ala452Ala
M0091705 GCCNIEBJ_00174 158661 3 Skin 0.03 protein_coding synonymous_variant LOW 6T>C Asn2Asn
M0091706 GCCNIEBJ_00174 158689 3 Skin 0.03 protein_coding missense_variant MODERATE 34G>A Ala12Thr
M0091707 GCCNIEBJ_00174 158740 3 Skin 0.03 protein_coding missense_variant MODERATE 85G>C Val29Leu
M0091708 GCCNIEBJ_00174 158794 3 Skin 0.03 protein_coding missense_variant MODERATE 139A>G Ser47Gly
M0091709 GCCNIEBJ_00174 159027 3 Skin 0.03 protein_coding synonymous_variant LOW 372C>T Val124Val
M0091710 GCCNIEBJ_00174 159111 3 Skin 0.03 protein_coding synonymous_variant LOW 456C>T Arg152Arg
M0091711 GCCNIEBJ_00174 159141 3 Skin 0.03 protein_coding synonymous_variant LOW 486T>C Asp162Asp
M0091712 GCCNIEBJ_00174 159144 3 Skin 0.03 protein_coding synonymous_variant LOW 489T>G Arg163Arg
M0091713 GCCNIEBJ_00174 159174 3 Skin 0.03 protein_coding synonymous_variant LOW 519C>T Pro173Pro
M0091714 GCCNIEBJ_00174 159216 3 Skin 0.03 protein_coding missense_variant MODERATE 561C>G Ile187Met
M0091715 GCCNIEBJ_00174 159234 3 Skin 0.03 protein_coding synonymous_variant LOW 579A>G Gln193Gln
M0091716 GCCNIEBJ_00174 159255 3 Skin 0.03 protein_coding synonymous_variant LOW 600A>G Ala200Ala
M0091717 GCCNIEBJ_00174 159335 3 Skin 0.03 protein_coding missense_variant MODERATE 680C>G Thr227Ser
M0091718 GCCNIEBJ_00175 159556 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2C>A None
M0091719 GCCNIEBJ_00176 159964 3 Skin 0.03 protein_coding missense_variant MODERATE 98G>C Arg33Thr
M0091720 GCCNIEBJ_00176 160086 3 Skin 0.03 protein_coding missense_variant MODERATE 220G>A Asp74Asn
M0091721 GCCNIEBJ_00176 160205 3 Skin 0.03 protein_coding synonymous_variant LOW 339G>A Lys113Lys
M0091722 GCCNIEBJ_00177 161373 3 Skin 0.03 protein_coding synonymous_variant LOW 1320C>T Gly440Gly
M0091723 GCCNIEBJ_00177 161517 3 Skin 0.03 protein_coding synonymous_variant LOW 1176G>A Lys392Lys
M0091724 GCCNIEBJ_00177 161574 3 Skin 0.03 protein_coding synonymous_variant LOW 1119C>T Tyr373Tyr
M0091725 GCCNIEBJ_00177 161915 3 Skin 0.03 protein_coding missense_variant MODERATE 778G>A Val260Ile
M0091726 GCCNIEBJ_00177 162213 3 Skin 0.03 protein_coding synonymous_variant LOW 480T>A Val160Val
M0091727 GCCNIEBJ_00177 162273 3 Skin 0.03 protein_coding synonymous_variant LOW 420A>C Ile140Ile
M0091728 GCCNIEBJ_00177 162823 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -131A>G None
M0091729 GCCNIEBJ_00048 40177 5 Skin 0.05 protein_coding missense_variant MODERATE 670G>A Val224Ile
M0091730 GCCNIEBJ_00048 40183 3 Skin 0.03 protein_coding missense_variant MODERATE 664G>A Ala222Thr
M0091731 GCCNIEBJ_00048 40730 5 Skin 0.05 protein_coding synonymous_variant LOW 117T>G Val39Val
M0091732 GCCNIEBJ_00048 40840 6 Skin 0.06 protein_coding synonymous_variant LOW 7T>C Leu3Leu
M0091733 GCCNIEBJ_00045 41021 10 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3489A>G None
M0091734 GCCNIEBJ_00045 41062 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3530G>A None
M0091735 GCCNIEBJ_00049 41129 4 Skin 0.04 protein_coding synonymous_variant LOW 63T>C Thr21Thr
M0091736 GCCNIEBJ_00049 41459 4 Skin 0.04 protein_coding synonymous_variant LOW 393C>T Thr131Thr
M0091737 GCCNIEBJ_00049 41489 4 Skin 0.04 protein_coding synonymous_variant LOW 423T>C Asn141Asn
M0091738 GCCNIEBJ_00049 41507 7 Skin 0.07 protein_coding synonymous_variant LOW 441T>C Thr147Thr
M0091739 GCCNIEBJ_00049 41533 5 Skin 0.05 protein_coding missense_variant MODERATE 467G>A Arg156Lys
M0091740 GCCNIEBJ_00049 41615 7 Skin 0.07 protein_coding synonymous_variant LOW 549A>G Glu183Glu
M0091741 GCCNIEBJ_00049 41628 6 Skin 0.06 protein_coding synonymous_variant LOW 562T>C Leu188Leu
M0091742 GCCNIEBJ_00049 41653 7 Skin 0.07 protein_coding missense_variant MODERATE 587C>A Ala196Asp
M0091743 GCCNIEBJ_00049 41741 4 Skin 0.04 protein_coding synonymous_variant LOW 675G>A Gln225Gln
M0091744 GCCNIEBJ_00049 41756 3 Skin 0.03 protein_coding missense_variant MODERATE 690G>C Met230Ile
M0091745 GCCNIEBJ_00049 41912 3 Skin 0.03 protein_coding synonymous_variant LOW 846C>T Asp282Asp
M0091746 GCCNIEBJ_00045 41051 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3519G>A None
M0091747 GCCNIEBJ_00045 41054 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3522G>A None
M0091748 GCCNIEBJ_00049 41086 3 Skin 0.03 protein_coding missense_variant MODERATE 20C>T Thr7Ile
M0091749 GCCNIEBJ_00049 41087 3 Skin 0.03 protein_coding synonymous_variant LOW 21C>T Thr7Thr
M0091750 GCCNIEBJ_00049 41291 4 Skin 0.04 protein_coding synonymous_variant LOW 225C>A Ser75Ser
M0091751 GCCNIEBJ_00049 41465 3 Skin 0.03 protein_coding synonymous_variant LOW 399C>T Pro133Pro
M0091752 GCCNIEBJ_00049 41786 5 Skin 0.05 protein_coding synonymous_variant LOW 720G>C Thr240Thr
M0091753 GCCNIEBJ_00049 41789 5 Skin 0.05 protein_coding synonymous_variant LOW 723T>C Ile241Ile
M0091754 GCCNIEBJ_00049 41792 5 Skin 0.05 protein_coding synonymous_variant LOW 726T>C Ser242Ser
M0091755 GCCNIEBJ_00049 41811 4 Skin 0.04 protein_coding synonymous_variant LOW 745A>C Arg249Arg
M0091756 GCCNIEBJ_00049 41813 4 Skin 0.04 protein_coding synonymous_variant LOW 747G>A Arg249Arg
M0091757 GCCNIEBJ_00049 41816 3 Skin 0.03 protein_coding synonymous_variant LOW 750C>G Gly250Gly
M0091758 GCCNIEBJ_00049 41819 4 Skin 0.04 protein_coding synonymous_variant LOW 753C>A Thr251Thr
M0091759 GCCNIEBJ_00049 41852 3 Skin 0.03 protein_coding synonymous_variant LOW 786T>A Ala262Ala
M0091760 GCCNIEBJ_00049 41877 5 Skin 0.05 protein_coding synonymous_variant LOW 811T>C Leu271Leu
M0091761 GCCNIEBJ_00049 41975 3 Skin 0.03 protein_coding synonymous_variant LOW 909C>T Asn303Asn
M0091762 GCCNIEBJ_00049 42335 3 Skin 0.03 protein_coding synonymous_variant LOW 1269G>C Ala423Ala
M0091763 GCCNIEBJ_00049 42338 3 Skin 0.03 protein_coding synonymous_variant LOW 1272C>T Ser424Ser
M0091764 GCCNIEBJ_00049 42344 3 Skin 0.03 protein_coding synonymous_variant LOW 1278T>C Ala426Ala
M0091765 GCCNIEBJ_00049 42368 3 Skin 0.03 protein_coding synonymous_variant LOW 1302G>A Glu434Glu
M0091766 GCCNIEBJ_00049 42416 3 Skin 0.03 protein_coding synonymous_variant LOW 1350C>T Gly450Gly
M0091767 GCCNIEBJ_00046 37725 3 Skin 0.03 protein_coding missense_variant MODERATE 1333T>G Ser445Ala
M0091768 GCCNIEBJ_00046 37729 3 Skin 0.03 protein_coding synonymous_variant LOW 1329C>T Ser443Ser
M0091769 GCCNIEBJ_00046 37747 3 Skin 0.03 protein_coding synonymous_variant LOW 1311C>G Leu437Leu
M0091770 GCCNIEBJ_00046 37867 3 Skin 0.03 protein_coding synonymous_variant LOW 1191T>G Val397Val
M0091771 GCCNIEBJ_00046 37928 3 Skin 0.03 protein_coding missense_variant MODERATE 1130T>A Ile377Lys
M0091772 GCCNIEBJ_00046 38062 3 Skin 0.03 protein_coding synonymous_variant LOW 996G>A Arg332Arg
M0091773 GCCNIEBJ_00046 38067 3 Skin 0.03 protein_coding synonymous_variant LOW 991C>T Leu331Leu
M0091774 GCCNIEBJ_00046 38100 3 Skin 0.03 protein_coding missense_variant MODERATE 958A>G Ile320Val
M0091775 GCCNIEBJ_00046 38278 5 Skin 0.05 protein_coding synonymous_variant LOW 780C>T Ile260Ile
M0091776 GCCNIEBJ_00046 38319 4 Skin 0.04 protein_coding synonymous_variant LOW 739T>C Leu247Leu
M0091777 GCCNIEBJ_00046 38347 5 Skin 0.05 protein_coding synonymous_variant LOW 711T>C Arg237Arg
M0091778 GCCNIEBJ_00046 38386 4 Skin 0.04 protein_coding synonymous_variant LOW 672G>T Val224Val
M0091779 GCCNIEBJ_00046 38410 5 Skin 0.05 protein_coding synonymous_variant LOW 648C>T Gly216Gly
M0091780 GCCNIEBJ_00046 38467 5 Skin 0.05 protein_coding synonymous_variant LOW 591C>T Asp197Asp
M0091781 GCCNIEBJ_00046 38607 8 Skin 0.08 protein_coding missense_variant MODERATE 451G>C Glu151Gln
M0091782 GCCNIEBJ_00046 38707 6 Skin 0.06 protein_coding synonymous_variant LOW 351C>T Leu117Leu
M0091783 GCCNIEBJ_00046 38749 6 Skin 0.06 protein_coding synonymous_variant LOW 309C>G Ala103Ala
M0091784 GCCNIEBJ_00046 38758 6 Skin 0.06 protein_coding missense_variant MODERATE 300G>T Glu100Asp
M0091785 GCCNIEBJ_00046 38805 6 Skin 0.06 protein_coding missense_variant MODERATE 253A>C Lys85Gln
M0091786 GCCNIEBJ_00046 38821 5 Skin 0.05 protein_coding synonymous_variant LOW 237T>C Asp79Asp
M0091787 GCCNIEBJ_00046 38830 5 Skin 0.05 protein_coding synonymous_variant LOW 228A>T Ala76Ala
M0091788 GCCNIEBJ_00046 38914 7 Skin 0.07 protein_coding synonymous_variant LOW 144T>C Tyr48Tyr
M0091789 GCCNIEBJ_00046 38959 7 Skin 0.07 protein_coding synonymous_variant LOW 99A>G Leu33Leu
M0091790 GCCNIEBJ_00046 38961 5 Skin 0.05 protein_coding synonymous_variant LOW 97C>T Leu33Leu
M0091791 GCCNIEBJ_00046 38965 5 Skin 0.05 protein_coding synonymous_variant LOW 93A>T Arg31Arg
M0091792 GCCNIEBJ_00047 39193 5 Skin 0.05 protein_coding missense_variant MODERATE 14C>G Thr5Ser
M0091793 GCCNIEBJ_00047 39194 5 Skin 0.05 protein_coding synonymous_variant LOW 15T>C Thr5Thr
M0091794 GCCNIEBJ_00047 39198 6 Skin 0.06 protein_coding missense_variant MODERATE 19A>C Ile7Leu
M0091795 GCCNIEBJ_00047 39199 6 Skin 0.06 protein_coding missense_variant MODERATE 20T>C Ile7Thr
M0091796 GCCNIEBJ_00047 39206 5 Skin 0.05 protein_coding synonymous_variant LOW 27A>T Ile9Ile
M0091797 GCCNIEBJ_00047 39251 7 Skin 0.07 protein_coding synonymous_variant LOW 72C>T Leu24Leu
M0091798 GCCNIEBJ_00047 39257 6 Skin 0.06 protein_coding synonymous_variant LOW 78T>C Val26Val
M0091799 GCCNIEBJ_00047 39303 13 Skin 0.13 protein_coding missense_variant MODERATE 124A>G Ile42Val
M0091800 GCCNIEBJ_00047 39381 5 Skin 0.05 protein_coding missense_variant MODERATE 202C>T His68Tyr
M0091801 GCCNIEBJ_00047 39809 5 Skin 0.05 protein_coding missense_variant MODERATE 630C>A Phe210Leu
M0091802 GCCNIEBJ_00048 40195 6 Skin 0.06 protein_coding missense_variant MODERATE 652C>A Leu218Met
M0091803 GCCNIEBJ_00048 40406 5 Skin 0.05 protein_coding synonymous_variant LOW 441T>C Ile147Ile
M0091804 GCCNIEBJ_00048 40516 5 Skin 0.05 protein_coding missense_variant MODERATE 331G>T Ala111Ser
M0091805 GCCNIEBJ_00048 40733 4 Skin 0.04 protein_coding synonymous_variant LOW 114G>A Leu38Leu
M0091806 GCCNIEBJ_00048 40835 3 Skin 0.03 protein_coding synonymous_variant LOW 12C>T Leu4Leu
M0091807 GCCNIEBJ_00049 41204 3 Skin 0.03 protein_coding synonymous_variant LOW 138C>T Ile46Ile
M0091808 GCCNIEBJ_00049 41210 3 Skin 0.03 protein_coding synonymous_variant LOW 144G>T Pro48Pro
M0091809 GCCNIEBJ_00049 41942 5 Skin 0.05 protein_coding synonymous_variant LOW 876T>C Thr292Thr
M0091810 GCCNIEBJ_00047 39211 7 Skin 0.07 protein_coding missense_variant MODERATE 32C>A Pro11His
M0091811 GCCNIEBJ_00047 39213 8 Skin 0.08 protein_coding missense_variant MODERATE 34G>A Asp12Asn
M0091812 GCCNIEBJ_00047 39224 7 Skin 0.07 protein_coding synonymous_variant LOW 45T>C Ala15Ala
M0091813 GCCNIEBJ_00047 39473 3 Skin 0.03 protein_coding synonymous_variant LOW 294C>T Ala98Ala
M0091814 GCCNIEBJ_00047 39480 3 Skin 0.03 protein_coding missense_variant MODERATE 301A>T Thr101Ser
M0091815 GCCNIEBJ_00047 39482 3 Skin 0.03 protein_coding synonymous_variant LOW 303A>G Thr101Thr
M0091816 GCCNIEBJ_00047 39524 3 Skin 0.03 protein_coding synonymous_variant LOW 345A>G Pro115Pro
M0091817 GCCNIEBJ_00047 39533 3 Skin 0.03 protein_coding synonymous_variant LOW 354C>T Thr118Thr
M0091818 GCCNIEBJ_00047 39536 3 Skin 0.03 protein_coding synonymous_variant LOW 357A>C Ala119Ala
M0091819 GCCNIEBJ_00047 39537 3 Skin 0.03 protein_coding missense_variant MODERATE 358A>G Met120Val
M0091820 GCCNIEBJ_00047 39539 3 Skin 0.03 protein_coding missense_variant MODERATE 360G>T Met120Ile
M0091821 GCCNIEBJ_00047 39890 3 Skin 0.03 protein_coding synonymous_variant LOW 711C>T Phe237Phe
M0091822 GCCNIEBJ_00048 40172 4 Skin 0.04 protein_coding synonymous_variant LOW 675A>G Thr225Thr
M0091823 GCCNIEBJ_00048 40174 4 Skin 0.04 protein_coding missense_variant MODERATE 673A>G Thr225Ala
M0091824 GCCNIEBJ_00048 40175 4 Skin 0.04 protein_coding synonymous_variant LOW 672A>G Val224Val
M0091825 GCCNIEBJ_00048 40283 5 Skin 0.05 protein_coding synonymous_variant LOW 564T>G Gly188Gly
M0091826 GCCNIEBJ_00046 38251 3 Skin 0.03 protein_coding synonymous_variant LOW 807G>A Glu269Glu
M0091827 GCCNIEBJ_00046 38260 3 Skin 0.03 protein_coding synonymous_variant LOW 798C>T Leu266Leu
M0091828 GCCNIEBJ_00046 38268 3 Skin 0.03 protein_coding synonymous_variant LOW 790T>C Leu264Leu
M0091829 GCCNIEBJ_00046 38533 5 Skin 0.05 protein_coding synonymous_variant LOW 525G>A Val175Val
M0091830 GCCNIEBJ_00046 38587 3 Skin 0.03 protein_coding synonymous_variant LOW 471G>A Leu157Leu
M0091831 GCCNIEBJ_00048 40376 5 Skin 0.05 protein_coding synonymous_variant LOW 471C>T His157His
M0091832 GCCNIEBJ_00045 40862 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3330C>T None
M0091833 GCCNIEBJ_00049 41831 3 Skin 0.03 protein_coding synonymous_variant LOW 765C>T Cys255Cys
M0091834 GCCNIEBJ_00049 41873 3 Skin 0.03 protein_coding synonymous_variant LOW 807C>T Gly269Gly
M0091835 GCCNIEBJ_00048 40250 4 Skin 0.04 protein_coding synonymous_variant LOW 597C>T Ile199Ile
M0091836 GCCNIEBJ_00048 40373 4 Skin 0.04 protein_coding synonymous_variant LOW 474C>T Arg158Arg
M0091837 GCCNIEBJ_00125 116212 3 Skin 0.03 protein_coding synonymous_variant LOW 39A>T Ser13Ser
M0091838 GCCNIEBJ_00125 116941 3 Skin 0.03 protein_coding synonymous_variant LOW 768T>C Gly256Gly
M0091839 GCCNIEBJ_00125 117010 3 Skin 0.03 protein_coding synonymous_variant LOW 837C>G Val279Val
M0091840 GCCNIEBJ_00046 43857 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4800C>A None
M0091841 GCCNIEBJ_00046 43930 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4873T>G None
M0091842 GCCNIEBJ_00046 43933 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4876C>A None
M0091843 GCCNIEBJ_00051 44326 3 Skin 0.03 protein_coding synonymous_variant LOW 555A>G Val185Val
M0091844 GCCNIEBJ_00052 45668 3 Skin 0.03 protein_coding synonymous_variant LOW 645C>T Asn215Asn
M0091845 GCCNIEBJ_00052 45746 3 Skin 0.03 protein_coding synonymous_variant LOW 723A>G Leu241Leu
M0091846 GCCNIEBJ_00047 40085 3 Skin 0.03 protein_coding synonymous_variant LOW 906G>A Val302Val
M0091847 GCCNIEBJ_00048 40226 3 Skin 0.03 protein_coding synonymous_variant LOW 621T>C Asn207Asn
M0091848 GCCNIEBJ_00048 40311 3 Skin 0.03 protein_coding missense_variant MODERATE 536A>G Gln179Arg
M0091849 GCCNIEBJ_00048 40374 3 Skin 0.03 protein_coding missense_variant MODERATE 473G>A Arg158His
M0091850 GCCNIEBJ_00046 38515 4 Skin 0.04 protein_coding synonymous_variant LOW 543A>G Thr181Thr
M0091851 GCCNIEBJ_00046 38524 4 Skin 0.04 protein_coding synonymous_variant LOW 534G>A Ala178Ala
M0091852 GCCNIEBJ_00045 40125 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2593A>G None
M0091853 GCCNIEBJ_00045 40131 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2599C>T None
M0091854 GCCNIEBJ_00045 40148 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2616T>A None
M0091855 GCCNIEBJ_00045 40149 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2617A>C None
M0091856 GCCNIEBJ_00048 40223 3 Skin 0.03 protein_coding synonymous_variant LOW 624C>T Ser208Ser
M0091857 GCCNIEBJ_00048 40423 3 Skin 0.03 protein_coding missense_variant MODERATE 424G>A Gly142Ser
M0091858 GCCNIEBJ_00048 40490 3 Skin 0.03 protein_coding synonymous_variant LOW 357A>G Lys119Lys
M0091859 GCCNIEBJ_00048 40493 4 Skin 0.04 protein_coding missense_variant MODERATE 354C>A Asp118Glu
M0091860 GCCNIEBJ_00048 40541 4 Skin 0.04 protein_coding synonymous_variant LOW 306A>G Leu102Leu
M0091861 GCCNIEBJ_00048 40565 3 Skin 0.03 protein_coding synonymous_variant LOW 282A>G Thr94Thr
M0091862 GCCNIEBJ_00048 40636 3 Skin 0.03 protein_coding synonymous_variant LOW 211T>C Leu71Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
GCCNIEBJ_00120 ARO:3002529 80.4 3.81e-83 1 158 1.0000 1.0000 aminoglycoside antibiotic AAC(3) antibiotic inactivation
GCCNIEBJ_00147 ARO:3002660 99.6 1.07e-205 1 278 1.0000 1.0000 aminoglycoside antibiotic APH(6) antibiotic inactivation
GCCNIEBJ_00148 ARO:3002639 99.6 5.98e-202 1 267 1.0000 1.0000 aminoglycoside antibiotic APH(3'') antibiotic inactivation
GCCNIEBJ_00166 ARO:3000175 100 3.16e-280 1 400 1.0000 1.0000 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GCCNIEBJ_00096 QCR87093.1|GH23 94 1.21e-236 1 351 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term