Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C513
  Reference Plasmid   NZ_CP024447.1
  Reference Plasmid Size   61809
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0092446 JFHFEPIL_00048 48100 4 Skin 0.06 protein_coding missense_variant MODERATE 95A>T Lys32Ile
M0092447 JFHFEPIL_00048 48125 5 Skin 0.08 protein_coding missense_variant MODERATE 70A>G Lys24Glu
M0092448 JFHFEPIL_00043 48195 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3250T>C None
M0092449 JFHFEPIL_00049 48217 3 Skin 0.05 protein_coding synonymous_variant LOW 9T>C Asn3Asn
M0092450 JFHFEPIL_00049 48233 4 Skin 0.06 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0092451 JFHFEPIL_00049 48234 5 Skin 0.08 protein_coding missense_variant MODERATE 26A>C Tyr9Ser
M0092452 JFHFEPIL_00049 48262 5 Skin 0.08 protein_coding synonymous_variant LOW 54T>C Phe18Phe
M0092453 JFHFEPIL_00049 48265 5 Skin 0.08 protein_coding synonymous_variant LOW 57C>T Asn19Asn
M0092454 JFHFEPIL_00049 48286 5 Skin 0.08 protein_coding synonymous_variant LOW 78C>T Val26Val
M0092455 JFHFEPIL_00049 48339 3 Skin 0.05 protein_coding missense_variant MODERATE 131A>G Asn44Ser
M0092456 JFHFEPIL_00049 48416 3 Skin 0.05 protein_coding missense_variant MODERATE 208C>G His70Asp
M0092457 JFHFEPIL_00049 48427 3 Skin 0.05 protein_coding missense_variant MODERATE 219G>A Met73Ile
M0092458 JFHFEPIL_00049 48475 5 Skin 0.08 protein_coding synonymous_variant LOW 267G>A Gln89Gln
M0092459 JFHFEPIL_00049 48528 5 Skin 0.08 protein_coding missense_variant MODERATE 320T>A Phe107Tyr
M0092460 JFHFEPIL_00049 48640 5 Skin 0.08 protein_coding synonymous_variant LOW 432A>G Glu144Glu
M0092461 JFHFEPIL_00049 48669 5 Skin 0.08 protein_coding missense_variant MODERATE 461A>G Glu154Gly
M0092462 JFHFEPIL_00050 48693 4 Skin 0.06 protein_coding synonymous_variant LOW 15C>T Phe5Phe
M0092463 JFHFEPIL_00050 48759 4 Skin 0.06 protein_coding synonymous_variant LOW 81G>A Leu27Leu
M0092464 JFHFEPIL_00050 48768 4 Skin 0.06 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0092465 JFHFEPIL_00050 48771 4 Skin 0.06 protein_coding synonymous_variant LOW 93T>C Asp31Asp
M0092466 JFHFEPIL_00050 48777 4 Skin 0.06 protein_coding synonymous_variant LOW 99C>T Ala33Ala
M0092467 JFHFEPIL_00050 48783 4 Skin 0.06 protein_coding synonymous_variant LOW 105G>A Gly35Gly
M0092468 JFHFEPIL_00050 48784 4 Skin 0.06 protein_coding missense_variant MODERATE 106G>A Val36Met
M0092469 JFHFEPIL_00050 48786 4 Skin 0.06 protein_coding synonymous_variant LOW 108G>A Val36Val
M0092470 JFHFEPIL_00050 48789 5 Skin 0.08 protein_coding synonymous_variant LOW 111A>T Ala37Ala
M0092471 JFHFEPIL_00050 48882 3 Skin 0.05 protein_coding synonymous_variant LOW 204C>T Gly68Gly
M0092472 JFHFEPIL_00050 48894 3 Skin 0.05 protein_coding synonymous_variant LOW 216T>C Phe72Phe
M0092473 JFHFEPIL_00050 49123 3 Skin 0.05 protein_coding synonymous_variant LOW 445T>C Leu149Leu
M0092474 JFHFEPIL_00050 49146 5 Skin 0.08 protein_coding synonymous_variant LOW 468T>C Asp156Asp
M0092475 JFHFEPIL_00050 49256 3 Skin 0.05 protein_coding missense_variant MODERATE 578C>T Thr193Ile
M0092476 JFHFEPIL_00050 49321 3 Skin 0.05 protein_coding missense_variant MODERATE 643G>A Asp215Asn
M0092477 JFHFEPIL_00050 49467 5 Skin 0.08 protein_coding synonymous_variant LOW 789T>C Leu263Leu
M0092478 JFHFEPIL_00019 17698 6 Skin 0.09 protein_coding missense_variant MODERATE 213A>C Glu71Asp
M0092479 JFHFEPIL_00019 17839 6 Skin 0.09 protein_coding missense_variant MODERATE 72G>T Glu24Asp
M0092480 JFHFEPIL_00019 17851 6 Skin 0.09 protein_coding synonymous_variant LOW 60T>C Ser20Ser
M0092481 JFHFEPIL_00020 17966 5 Skin 0.08 protein_coding synonymous_variant LOW 1485T>C Asn495Asn
M0092482 JFHFEPIL_00020 18191 6 Skin 0.09 protein_coding synonymous_variant LOW 1260T>C Val420Val
M0092483 JFHFEPIL_00020 18380 6 Skin 0.09 protein_coding synonymous_variant LOW 1071C>A Pro357Pro
M0092484 JFHFEPIL_00020 18557 6 Skin 0.09 protein_coding synonymous_variant LOW 894C>T Ile298Ile
M0092485 JFHFEPIL_00020 18641 5 Skin 0.08 protein_coding synonymous_variant LOW 810T>C Gly270Gly
M0092486 JFHFEPIL_00020 18671 6 Skin 0.09 protein_coding synonymous_variant LOW 780G>A Glu260Glu
M0092487 JFHFEPIL_00020 19166 6 Skin 0.09 protein_coding synonymous_variant LOW 285G>A Pro95Pro
M0092488 JFHFEPIL_00016 19584 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4767T>C None
M0092489 JFHFEPIL_00016 19678 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4861G>T None
M0092490 JFHFEPIL_00021 20511 4 Skin 0.06 protein_coding missense_variant MODERATE 3005A>G His1002Arg
M0092491 JFHFEPIL_00021 20564 3 Skin 0.05 protein_coding synonymous_variant LOW 2952C>G Gly984Gly
M0092492 JFHFEPIL_00021 20765 5 Skin 0.08 protein_coding synonymous_variant LOW 2751T>C Ser917Ser
M0092493 JFHFEPIL_00021 21080 7 Skin 0.11 protein_coding synonymous_variant LOW 2436C>A Pro812Pro
M0092494 JFHFEPIL_00021 21235 8 Skin 0.13 protein_coding missense_variant MODERATE 2281A>G Ile761Val
M0092495 JFHFEPIL_00021 21734 8 Skin 0.13 protein_coding synonymous_variant LOW 1782T>C Gly594Gly
M0092496 JFHFEPIL_00021 21775 6 Skin 0.09 protein_coding missense_variant MODERATE 1741G>T Ala581Ser
M0092497 JFHFEPIL_00021 21953 5 Skin 0.08 protein_coding synonymous_variant LOW 1563C>T Arg521Arg
M0092498 JFHFEPIL_00021 22428 8 Skin 0.13 protein_coding missense_variant MODERATE 1088A>G Asp363Gly
M0092499 JFHFEPIL_00021 22955 3 Skin 0.05 protein_coding missense_variant MODERATE 561C>G Ile187Met
M0092500 JFHFEPIL_00021 23003 6 Skin 0.09 protein_coding synonymous_variant LOW 513T>C Ala171Ala
M0092501 JFHFEPIL_00021 23369 4 Skin 0.06 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0092502 JFHFEPIL_00021 23399 4 Skin 0.06 protein_coding synonymous_variant LOW 117C>T Arg39Arg
M0092503 JFHFEPIL_00020 23565 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4115G>T None
M0092504 JFHFEPIL_00013 10572 3 Skin 0.05 protein_coding synonymous_variant LOW 270A>G Ala90Ala
M0092505 JFHFEPIL_00013 10769 3 Skin 0.05 protein_coding missense_variant MODERATE 73C>G His25Asp
M0092506 JFHFEPIL_00007 10892 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2860C>A None
M0092507 JFHFEPIL_00007 10906 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2874G>C None
M0092508 JFHFEPIL_00007 10941 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2909T>G None
M0092509 JFHFEPIL_00014 11274 3 Skin 0.05 protein_coding missense_variant MODERATE 766A>G Ile256Val
M0092510 JFHFEPIL_00014 11953 3 Skin 0.05 protein_coding synonymous_variant LOW 87G>A Leu29Leu
M0092511 JFHFEPIL_00014 11971 3 Skin 0.05 protein_coding synonymous_variant LOW 69C>T His23His
M0092512 JFHFEPIL_00022 23725 11 Skin 0.17 protein_coding missense_variant MODERATE 1270C>A Gln424Lys
M0092513 JFHFEPIL_00022 23972 7 Skin 0.11 protein_coding synonymous_variant LOW 1023C>T Ile341Ile
M0092514 JFHFEPIL_00022 23990 10 Skin 0.16 protein_coding synonymous_variant LOW 1005G>A Thr335Thr
M0092515 JFHFEPIL_00022 24034 10 Skin 0.16 protein_coding missense_variant MODERATE 961T>G Leu321Val
M0092516 JFHFEPIL_00022 24047 6 Skin 0.09 protein_coding synonymous_variant LOW 948G>A Leu316Leu
M0092517 JFHFEPIL_00022 24181 10 Skin 0.16 protein_coding missense_variant MODERATE 814A>G Ile272Val
M0092518 JFHFEPIL_00022 24194 11 Skin 0.17 protein_coding synonymous_variant LOW 801T>C Cys267Cys
M0092519 JFHFEPIL_00022 24296 11 Skin 0.17 protein_coding synonymous_variant LOW 699C>T His233His
M0092520 JFHFEPIL_00022 24305 8 Skin 0.13 protein_coding synonymous_variant LOW 690G>T Gly230Gly
M0092521 JFHFEPIL_00022 24326 12 Skin 0.19 protein_coding missense_variant MODERATE 669A>G Ile223Met
M0092522 JFHFEPIL_00022 24683 8 Skin 0.13 protein_coding synonymous_variant LOW 312G>A Gln104Gln
M0092523 JFHFEPIL_00022 24782 6 Skin 0.09 protein_coding synonymous_variant LOW 213C>T Phe71Phe
M0092524 JFHFEPIL_00022 24924 10 Skin 0.16 protein_coding missense_variant MODERATE 71A>G Asn24Ser
M0092525 JFHFEPIL_00021 25100 10 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1585G>A None
M0092526 JFHFEPIL_00021 25178 11 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1663T>C None
M0092527 JFHFEPIL_00021 25228 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1713G>T None
M0092528 JFHFEPIL_00021 25258 12 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1743A>G None
M0092529 JFHFEPIL_00021 25300 8 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1785A>G None
M0092530 JFHFEPIL_00021 25338 7 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1823C>T None
M0092531 JFHFEPIL_00021 25341 12 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1826C>G None
M0092532 JFHFEPIL_00023 25695 4 Skin 0.06 protein_coding synonymous_variant LOW 1065G>A Gly355Gly
M0092533 JFHFEPIL_00023 25738 8 Skin 0.13 protein_coding missense_variant MODERATE 1022T>C Val341Ala
M0092534 JFHFEPIL_00023 25739 4 Skin 0.06 protein_coding missense_variant MODERATE 1021G>A Val341Ile
M0092535 JFHFEPIL_00023 25773 5 Skin 0.08 protein_coding missense_variant MODERATE 987G>C Met329Ile
M0092536 JFHFEPIL_00023 25776 4 Skin 0.06 protein_coding synonymous_variant LOW 984G>A Val328Val
M0092537 JFHFEPIL_00023 25779 12 Skin 0.19 protein_coding synonymous_variant LOW 981C>A Ala327Ala
M0092538 JFHFEPIL_00023 25986 9 Skin 0.14 protein_coding synonymous_variant LOW 774A>G Leu258Leu
M0092539 JFHFEPIL_00023 26017 6 Skin 0.09 protein_coding missense_variant MODERATE 743G>T Gly248Val
M0092540 JFHFEPIL_00021 26864 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3349G>A None
M0092541 JFHFEPIL_00021 26869 14 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -3354T>A None
M0092542 JFHFEPIL_00024 26994 14 Skin 0.22 protein_coding missense_variant MODERATE 1243A>G Thr415Ala
M0092543 JFHFEPIL_00024 27144 8 Skin 0.13 protein_coding synonymous_variant LOW 1093C>T Leu365Leu
M0092544 JFHFEPIL_00024 27151 15 Skin 0.23 protein_coding synonymous_variant LOW 1086T>C Gly362Gly
M0092545 JFHFEPIL_00024 27258 10 Skin 0.16 protein_coding missense_variant MODERATE 979A>G Thr327Ala
M0092546 JFHFEPIL_00024 27354 6 Skin 0.09 protein_coding missense_variant MODERATE 883A>G Thr295Ala
M0092547 JFHFEPIL_00024 27484 15 Skin 0.23 protein_coding missense_variant MODERATE 753G>T Trp251Cys
M0092548 JFHFEPIL_00024 27523 8 Skin 0.13 protein_coding synonymous_variant LOW 714T>C Tyr238Tyr
M0092549 JFHFEPIL_00024 27693 8 Skin 0.13 protein_coding synonymous_variant LOW 544T>C Leu182Leu
M0092550 JFHFEPIL_00024 27950 13 Skin 0.20 protein_coding missense_variant MODERATE 287G>C Ser96Thr
M0092551 JFHFEPIL_00024 27966 14 Skin 0.22 protein_coding missense_variant MODERATE 271A>T Ser91Cys
M0092552 JFHFEPIL_00024 28120 4 Skin 0.06 protein_coding synonymous_variant LOW 117G>A Ser39Ser
M0092553 JFHFEPIL_00024 28129 6 Skin 0.09 protein_coding synonymous_variant LOW 108T>C Leu36Leu
M0092554 JFHFEPIL_00021 28382 10 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4867T>C None
M0092555 JFHFEPIL_00021 28387 12 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4872A>C None
M0092556 JFHFEPIL_00021 28395 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4880A>G None
M0092557 JFHFEPIL_00021 28396 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4881T>G None
M0092558 JFHFEPIL_00021 28434 8 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4919G>A None
M0092559 JFHFEPIL_00021 28454 10 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4939C>G None
M0092560 JFHFEPIL_00025 28508 8 Skin 0.13 protein_coding missense_variant MODERATE 17G>T Cys6Phe
M0092561 JFHFEPIL_00025 28548 4 Skin 0.06 protein_coding synonymous_variant LOW 57T>A Pro19Pro
M0092562 JFHFEPIL_00025 28614 13 Skin 0.20 protein_coding synonymous_variant LOW 123A>G Gly41Gly
M0092563 JFHFEPIL_00025 28636 10 Skin 0.16 protein_coding missense_variant MODERATE 145C>T Pro49Ser
M0092564 JFHFEPIL_00025 28706 11 Skin 0.17 protein_coding missense_variant MODERATE 215G>T Gly72Val
M0092565 JFHFEPIL_00025 28743 10 Skin 0.16 protein_coding synonymous_variant LOW 252C>T Asn84Asn
M0092566 JFHFEPIL_00025 28835 11 Skin 0.17 protein_coding missense_variant MODERATE 344T>C Leu115Ser
M0092567 JFHFEPIL_00025 28883 5 Skin 0.08 protein_coding missense_variant MODERATE 392A>G Asp131Gly
M0092568 JFHFEPIL_00025 28915 5 Skin 0.08 protein_coding missense_variant MODERATE 424A>G Thr142Ala
M0092569 JFHFEPIL_00025 29167 5 Skin 0.08 protein_coding missense_variant MODERATE 676T>G Ser226Ala
M0092570 JFHFEPIL_00025 29349 12 Skin 0.19 protein_coding missense_variant MODERATE 858T>G Asp286Glu
M0092571 JFHFEPIL_00025 29404 6 Skin 0.09 protein_coding synonymous_variant LOW 913C>T Leu305Leu
M0092572 JFHFEPIL_00025 29421 11 Skin 0.17 protein_coding synonymous_variant LOW 930T>C Ala310Ala
M0092573 JFHFEPIL_00025 29436 6 Skin 0.09 protein_coding synonymous_variant LOW 945C>T His315His
M0092574 JFHFEPIL_00025 29622 11 Skin 0.17 protein_coding missense_variant MODERATE 1131A>G Ile377Met
M0092575 JFHFEPIL_00025 29640 4 Skin 0.06 protein_coding synonymous_variant LOW 1149C>A Gly383Gly
M0092576 JFHFEPIL_00025 29654 5 Skin 0.08 protein_coding missense_variant MODERATE 1163G>A Arg388Lys
M0092577 JFHFEPIL_00025 29870 6 Skin 0.09 protein_coding missense_variant MODERATE 1379C>G Thr460Arg
M0092578 JFHFEPIL_00025 29921 10 Skin 0.16 protein_coding missense_variant MODERATE 1430A>T Tyr477Phe
M0092579 JFHFEPIL_00025 29961 10 Skin 0.16 protein_coding synonymous_variant LOW 1470T>C Leu490Leu
M0092580 JFHFEPIL_00025 30117 10 Skin 0.16 protein_coding synonymous_variant LOW 1626A>C Leu542Leu
M0092581 JFHFEPIL_00025 30175 7 Skin 0.11 protein_coding missense_variant MODERATE 1684G>A Asp562Asn
M0092582 JFHFEPIL_00025 30210 10 Skin 0.16 protein_coding synonymous_variant LOW 1719A>G Glu573Glu
M0092583 JFHFEPIL_00025 30390 8 Skin 0.13 protein_coding synonymous_variant LOW 1899C>G Leu633Leu
M0092584 JFHFEPIL_00025 30585 9 Skin 0.14 protein_coding synonymous_variant LOW 2094C>T Asn698Asn
M0092585 JFHFEPIL_00023 30679 8 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3920T>G None
M0092586 JFHFEPIL_00023 30732 10 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3973A>G None
M0092587 JFHFEPIL_00026 31020 6 Skin 0.09 protein_coding missense_variant MODERATE 205G>A Val69Met
M0092588 JFHFEPIL_00026 31094 6 Skin 0.09 protein_coding synonymous_variant LOW 279G>A Val93Val
M0092589 JFHFEPIL_00026 31343 6 Skin 0.09 protein_coding synonymous_variant LOW 528C>T Asn176Asn
M0092590 JFHFEPIL_00026 31376 5 Skin 0.08 protein_coding synonymous_variant LOW 561A>G Glu187Glu
M0092591 JFHFEPIL_00026 31400 4 Skin 0.06 protein_coding synonymous_variant LOW 585G>A Lys195Lys
M0092592 JFHFEPIL_00026 31424 4 Skin 0.06 protein_coding synonymous_variant LOW 609G>A Leu203Leu
M0092593 JFHFEPIL_00026 31448 4 Skin 0.06 protein_coding synonymous_variant LOW 633C>T Val211Val
M0092594 JFHFEPIL_00023 31476 7 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4717C>T None
M0092595 JFHFEPIL_00023 31537 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4778G>T None
M0092596 JFHFEPIL_00027 31669 6 Skin 0.09 protein_coding synonymous_variant LOW 78C>T Asp26Asp
M0092597 JFHFEPIL_00027 31715 7 Skin 0.11 protein_coding synonymous_variant LOW 124T>C Leu42Leu
M0092598 JFHFEPIL_00027 31766 4 Skin 0.06 protein_coding synonymous_variant LOW 175T>C Leu59Leu
M0092599 JFHFEPIL_00027 31879 5 Skin 0.08 protein_coding synonymous_variant LOW 288T>C His96His
M0092600 JFHFEPIL_00027 31927 4 Skin 0.06 protein_coding synonymous_variant LOW 336G>A Leu112Leu
M0092601 JFHFEPIL_00027 31987 5 Skin 0.08 protein_coding synonymous_variant LOW 396C>T Tyr132Tyr
M0092602 JFHFEPIL_00027 32019 4 Skin 0.06 protein_coding missense_variant MODERATE 428C>T Pro143Leu
M0092603 JFHFEPIL_00027 32149 3 Skin 0.05 protein_coding synonymous_variant LOW 558C>T Gly186Gly
M0092604 JFHFEPIL_00024 32240 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4004A>C None
M0092605 JFHFEPIL_00003 7115 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3844A>T None
M0092606 JFHFEPIL_00003 7153 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3882G>T None
M0092607 JFHFEPIL_00003 7154 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3883C>T None
M0092608 JFHFEPIL_00003 7156 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3885C>A None
M0092609 JFHFEPIL_00003 7159 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3888C>T None
M0092610 JFHFEPIL_00003 7242 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3971G>C None
M0092611 JFHFEPIL_00003 7251 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3980C>T None
M0092612 JFHFEPIL_00007 7303 4 Skin 0.06 protein_coding missense_variant MODERATE 730G>A Val244Ile
M0092613 JFHFEPIL_00007 7451 4 Skin 0.06 protein_coding synonymous_variant LOW 582A>G Lys194Lys
M0092614 JFHFEPIL_00020 18857 6 Skin 0.09 protein_coding synonymous_variant LOW 594G>A Gly198Gly
M0092615 JFHFEPIL_00021 20199 3 Skin 0.05 protein_coding missense_variant MODERATE 3317A>T Tyr1106Phe
M0092616 JFHFEPIL_00023 25782 8 Skin 0.13 protein_coding synonymous_variant LOW 978G>A Leu326Leu
M0092617 JFHFEPIL_00021 26872 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3357A>G None
M0092618 JFHFEPIL_00021 26895 8 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3380T>C None
M0092619 JFHFEPIL_00024 27349 4 Skin 0.06 protein_coding missense_variant MODERATE 888C>A Asp296Glu
M0092620 JFHFEPIL_00024 28021 9 Skin 0.14 protein_coding synonymous_variant LOW 216C>T Phe72Phe
M0092621 JFHFEPIL_00024 28174 3 Skin 0.05 protein_coding synonymous_variant LOW 63G>A Val21Val
M0092622 JFHFEPIL_00021 28418 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4903T>C None
M0092623 JFHFEPIL_00025 28813 4 Skin 0.06 protein_coding missense_variant MODERATE 322G>C Glu108Gln
M0092624 JFHFEPIL_00025 28987 4 Skin 0.06 protein_coding missense_variant MODERATE 496G>A Asp166Asn
M0092625 JFHFEPIL_00025 29681 3 Skin 0.05 protein_coding missense_variant MODERATE 1190C>A Pro397Gln
M0092626 JFHFEPIL_00025 30518 3 Skin 0.05 protein_coding missense_variant MODERATE 2027A>C His676Pro
M0092627 JFHFEPIL_00054 60691 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4240C>A None
M0092628 JFHFEPIL_00054 60744 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4293C>T None
M0092629 JFHFEPIL_00054 60752 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4301T>A None
M0092630 JFHFEPIL_00054 60753 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4302T>C None
M0092631 JFHFEPIL_00061 61331 3 Skin 0.05 protein_coding synonymous_variant LOW 153G>A Glu51Glu
M0092632 JFHFEPIL_00061 61343 3 Skin 0.05 protein_coding synonymous_variant LOW 141A>G Leu47Leu
M0092633 JFHFEPIL_00024 32474 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4238C>A None
M0092634 JFHFEPIL_00028 32638 5 Skin 0.08 protein_coding missense_variant MODERATE 844A>G Thr282Ala
M0092635 JFHFEPIL_00028 32927 5 Skin 0.08 protein_coding synonymous_variant LOW 555T>C Arg185Arg
M0092636 JFHFEPIL_00029 33521 6 Skin 0.09 protein_coding stop_lost&splice_region_variant HIGH 1914A>G Ter638Trpext*?
M0092637 JFHFEPIL_00029 33974 6 Skin 0.09 protein_coding missense_variant MODERATE 1461A>C Glu487Asp
M0092638 JFHFEPIL_00029 34105 6 Skin 0.09 protein_coding missense_variant MODERATE 1330A>G Asn444Asp
M0092639 JFHFEPIL_00029 34141 6 Skin 0.09 protein_coding missense_variant MODERATE 1294G>A Val432Ile
M0092640 JFHFEPIL_00029 34186 6 Skin 0.09 protein_coding missense_variant MODERATE 1249G>C Gly417Arg
M0092641 JFHFEPIL_00029 34271 6 Skin 0.09 protein_coding synonymous_variant LOW 1164C>G Thr388Thr
M0092642 JFHFEPIL_00029 34599 6 Skin 0.09 protein_coding missense_variant MODERATE 836C>T Ala279Val
M0092643 JFHFEPIL_00029 34928 5 Skin 0.08 protein_coding synonymous_variant LOW 507A>C Ala169Ala
M0092644 JFHFEPIL_00029 35074 6 Skin 0.09 protein_coding missense_variant MODERATE 361C>T His121Tyr
M0092645 JFHFEPIL_00029 35264 6 Skin 0.09 protein_coding synonymous_variant LOW 171C>T Tyr57Tyr
M0092646 JFHFEPIL_00030 35664 5 Skin 0.08 protein_coding synonymous_variant LOW 366C>T Arg122Arg
M0092647 JFHFEPIL_00028 36128 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2647G>A None
M0092648 JFHFEPIL_00016 14040 3 Skin 0.05 protein_coding synonymous_variant LOW 778T>C Leu260Leu
M0092649 JFHFEPIL_00016 14136 5 Skin 0.08 protein_coding missense_variant MODERATE 682A>C Asn228His
M0092650 JFHFEPIL_00016 14176 5 Skin 0.08 protein_coding synonymous_variant LOW 642A>G Lys214Lys
M0092651 JFHFEPIL_00016 14311 5 Skin 0.08 protein_coding synonymous_variant LOW 507A>G Leu169Leu
M0092652 JFHFEPIL_00016 14348 5 Skin 0.08 protein_coding missense_variant MODERATE 470G>A Arg157Gln
M0092653 JFHFEPIL_00016 14502 4 Skin 0.06 protein_coding missense_variant MODERATE 316G>A Val106Ile
M0092654 JFHFEPIL_00016 14503 4 Skin 0.06 protein_coding synonymous_variant LOW 315G>T Ala105Ala
M0092655 JFHFEPIL_00016 14746 3 Skin 0.05 protein_coding synonymous_variant LOW 72C>A Leu24Leu
M0092656 JFHFEPIL_00012 14835 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4517C>A None
M0092657 JFHFEPIL_00012 14848 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4530C>T None
M0092658 JFHFEPIL_00012 14908 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4590C>T None
M0092659 JFHFEPIL_00012 14909 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4591T>C None
M0092660 JFHFEPIL_00022 23858 5 Skin 0.08 protein_coding missense_variant MODERATE 1137G>T Met379Ile
M0092661 JFHFEPIL_00022 24043 3 Skin 0.05 protein_coding missense_variant MODERATE 952C>A Leu318Met
M0092662 JFHFEPIL_00024 28131 6 Skin 0.09 protein_coding missense_variant MODERATE 106C>A Leu36Ile
M0092663 JFHFEPIL_00021 28447 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4932G>A None
M0092664 JFHFEPIL_00011 9606 3 Skin 0.05 protein_coding missense_variant MODERATE 35T>C Ile12Thr
M0092665 JFHFEPIL_00012 10155 3 Skin 0.05 protein_coding missense_variant MODERATE 164G>T Trp55Leu
M0092666 JFHFEPIL_00012 10184 3 Skin 0.05 protein_coding synonymous_variant LOW 135A>G Leu45Leu
M0092667 JFHFEPIL_00016 13559 4 Skin 0.06 protein_coding missense_variant MODERATE 1259T>C Met420Thr
M0092668 JFHFEPIL_00016 13606 4 Skin 0.06 protein_coding missense_variant MODERATE 1212C>G Phe404Leu
M0092669 JFHFEPIL_00001 220 3 Skin 0.05 protein_coding synonymous_variant LOW 120G>A Val40Val
M0092670 JFHFEPIL_00001 386 3 Skin 0.05 protein_coding synonymous_variant LOW 286T>C Leu96Leu
M0092671 JFHFEPIL_00001 532 3 Skin 0.05 protein_coding synonymous_variant LOW 432C>T Asn144Asn
M0092672 JFHFEPIL_00001 757 3 Skin 0.05 protein_coding synonymous_variant LOW 657C>T Asp219Asp
M0092673 JFHFEPIL_00025 29983 3 Skin 0.05 protein_coding missense_variant MODERATE 1492C>A Gln498Lys
M0092674 JFHFEPIL_00025 30142 3 Skin 0.05 protein_coding missense_variant MODERATE 1651C>G His551Asp
M0092675 JFHFEPIL_00023 31536 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4777C>A None
M0092676 JFHFEPIL_00027 32227 3 Skin 0.05 protein_coding synonymous_variant LOW 636A>G Thr212Thr
M0092677 JFHFEPIL_00025 28589 3 Skin 0.05 protein_coding missense_variant MODERATE 98C>T Ala33Val
M0092678 JFHFEPIL_00003 2807 4 Skin 0.06 protein_coding synonymous_variant LOW 465A>G Ala155Ala
M0092679 JFHFEPIL_00003 2903 4 Skin 0.06 protein_coding synonymous_variant LOW 369G>A Lys123Lys
M0092680 JFHFEPIL_00003 2939 4 Skin 0.06 protein_coding synonymous_variant LOW 333T>C Ile111Ile
M0092681 JFHFEPIL_00003 2945 4 Skin 0.06 protein_coding synonymous_variant LOW 327T>C Ser109Ser
M0092682 JFHFEPIL_00003 2999 3 Skin 0.05 protein_coding synonymous_variant LOW 273T>C Tyr91Tyr
M0092683 JFHFEPIL_00036 39458 3 Skin 0.05 protein_coding synonymous_variant LOW 195A>G Ala65Ala
M0092684 JFHFEPIL_00019 17766 3 Skin 0.05 protein_coding missense_variant MODERATE 145G>T Asp49Tyr
M0092685 JFHFEPIL_00020 19364 4 Skin 0.06 protein_coding synonymous_variant LOW 87C>T Val29Val
M0092686 JFHFEPIL_00016 19731 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4914C>A None
M0092687 JFHFEPIL_00021 21719 3 Skin 0.05 protein_coding synonymous_variant LOW 1797A>G Ala599Ala
M0092688 JFHFEPIL_00050 49756 4 Skin 0.06 protein_coding missense_variant MODERATE 1078A>C Ile360Leu
M0092689 JFHFEPIL_00050 49846 4 Skin 0.06 protein_coding missense_variant MODERATE 1168A>G Thr390Ala
M0092690 JFHFEPIL_00050 49941 4 Skin 0.06 protein_coding synonymous_variant LOW 1263T>C Asn421Asn
M0092691 JFHFEPIL_00050 49948 4 Skin 0.06 protein_coding missense_variant MODERATE 1270T>C Ser424Pro
M0092692 JFHFEPIL_00050 49951 4 Skin 0.06 protein_coding missense_variant MODERATE 1273G>A Ala425Thr
M0092693 JFHFEPIL_00050 50057 4 Skin 0.06 protein_coding missense_variant MODERATE 1379A>G His460Arg
M0092694 JFHFEPIL_00050 50062 3 Skin 0.05 protein_coding missense_variant MODERATE 1384G>A Val462Ile
M0092695 JFHFEPIL_00050 50063 4 Skin 0.06 protein_coding missense_variant MODERATE 1385T>C Val462Ala
M0092696 JFHFEPIL_00050 50065 4 Skin 0.06 protein_coding missense_variant MODERATE 1387G>T Asp463Tyr
M0092697 JFHFEPIL_00050 50068 4 Skin 0.06 protein_coding missense_variant MODERATE 1390G>C Glu464Gln
M0092698 JFHFEPIL_00050 50075 4 Skin 0.06 protein_coding missense_variant MODERATE 1397A>G Glu466Gly
M0092699 JFHFEPIL_00050 50326 4 Skin 0.06 protein_coding missense_variant MODERATE 1648A>G Asn550Asp
M0092700 JFHFEPIL_00050 50646 4 Skin 0.06 protein_coding synonymous_variant LOW 1968A>G Gln656Gln
M0092701 JFHFEPIL_00050 50697 3 Skin 0.05 protein_coding missense_variant MODERATE 2019C>A Asn673Lys
M0092702 JFHFEPIL_00050 50826 3 Skin 0.05 protein_coding synonymous_variant LOW 2148A>G Gln716Gln
M0092703 JFHFEPIL_00002 1388 3 Skin 0.05 protein_coding synonymous_variant LOW 456A>G Lys152Lys
M0092704 JFHFEPIL_00002 1505 3 Skin 0.05 protein_coding synonymous_variant LOW 573C>G Ser191Ser
M0092705 JFHFEPIL_00002 1583 3 Skin 0.05 protein_coding synonymous_variant LOW 651T>C Ser217Ser
M0092706 JFHFEPIL_00002 1627 3 Skin 0.05 protein_coding missense_variant MODERATE 695G>A Arg232Lys
M0092707 JFHFEPIL_00004 1934 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1840C>T None
M0092708 JFHFEPIL_00004 1939 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1835G>T None
M0092709 JFHFEPIL_00004 1954 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1820G>A None
M0092710 JFHFEPIL_00004 1961 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1813T>C None
M0092711 JFHFEPIL_00003 2174 3 Skin 0.05 protein_coding synonymous_variant LOW 1098A>G Leu366Leu
M0092712 JFHFEPIL_00003 2390 3 Skin 0.05 protein_coding synonymous_variant LOW 882C>A Ile294Ile
M0092713 JFHFEPIL_00003 2445 3 Skin 0.05 protein_coding missense_variant MODERATE 827T>C Val276Ala
M0092714 JFHFEPIL_00003 2490 3 Skin 0.05 protein_coding missense_variant MODERATE 782T>C Leu261Ser
M0092715 JFHFEPIL_00003 2590 3 Skin 0.05 protein_coding missense_variant MODERATE 682A>G Ser228Gly
M0092716 JFHFEPIL_00053 54894 4 Skin 0.06 protein_coding synonymous_variant LOW 567C>T Phe189Phe
M0092717 JFHFEPIL_00053 54921 4 Skin 0.06 protein_coding synonymous_variant LOW 540C>T Asn180Asn
M0092718 JFHFEPIL_00053 54947 4 Skin 0.06 protein_coding missense_variant MODERATE 514T>C Ser172Pro
M0092719 JFHFEPIL_00053 54969 4 Skin 0.06 protein_coding synonymous_variant LOW 492T>C Ile164Ile
M0092720 JFHFEPIL_00053 55271 4 Skin 0.06 protein_coding missense_variant MODERATE 190C>G Gln64Glu
M0092721 JFHFEPIL_00054 55510 4 Skin 0.06 protein_coding missense_variant MODERATE 942G>T Lys314Asn
M0092722 JFHFEPIL_00054 55566 3 Skin 0.05 protein_coding missense_variant MODERATE 886T>C Ser296Pro
M0092723 JFHFEPIL_00054 55698 3 Skin 0.05 protein_coding synonymous_variant LOW 754C>T Leu252Leu
M0092724 JFHFEPIL_00054 55771 3 Skin 0.05 protein_coding synonymous_variant LOW 681T>A Arg227Arg
M0092725 JFHFEPIL_00054 55772 3 Skin 0.05 protein_coding missense_variant MODERATE 680G>A Arg227His
M0092726 JFHFEPIL_00054 55777 3 Skin 0.05 protein_coding synonymous_variant LOW 675C>T Ala225Ala
M0092727 JFHFEPIL_00054 55961 3 Skin 0.05 protein_coding missense_variant MODERATE 491G>A Ser164Asn
M0092728 JFHFEPIL_00021 19772 3 Skin 0.05 protein_coding synonymous_variant LOW 3744T>C Arg1248Arg
M0092729 JFHFEPIL_00020 23578 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4128G>A None
M0092730 JFHFEPIL_00024 27645 3 Skin 0.05 protein_coding missense_variant MODERATE 592A>G Ser198Gly
M0092731 JFHFEPIL_00024 27814 3 Skin 0.05 protein_coding synonymous_variant LOW 423A>G Gly141Gly
M0092732 JFHFEPIL_00024 27828 3 Skin 0.05 protein_coding missense_variant MODERATE 409A>G Ile137Val
M0092733 JFHFEPIL_00026 31106 3 Skin 0.05 protein_coding synonymous_variant LOW 291T>C Ser97Ser
M0092734 JFHFEPIL_00026 31116 3 Skin 0.05 protein_coding missense_variant MODERATE 301A>C Lys101Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
JFHFEPIL_00020 PHI:10513 narH 73.5 1.1e-233 1 511 0.9980 0.9941 rodents urinary tract infection respiratory nitrate reductase 1 beta chain reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JFHFEPIL_00020 5.A.3.1.1 73.5 2.5e-233 1 511 0.9980 2.2622 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family