Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C514
  Reference Plasmid   NZ_CP024448.1
  Reference Plasmid Size   59633
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0092735 COHJBNIA_00001 83 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -18A>G None
M0092736 COHJBNIA_00001 121 16 Skin 0.18 protein_coding synonymous_variant LOW 21A>G Lys7Lys
M0092737 COHJBNIA_00001 131 15 Skin 0.16 protein_coding missense_variant MODERATE 31T>G Phe11Val
M0092738 COHJBNIA_00001 145 14 Skin 0.15 protein_coding synonymous_variant LOW 45A>G Lys15Lys
M0092739 COHJBNIA_00001 262 17 Skin 0.19 protein_coding synonymous_variant LOW 162G>A Gly54Gly
M0092740 COHJBNIA_00001 445 12 Skin 0.13 protein_coding synonymous_variant LOW 345A>G Glu115Glu
M0092741 COHJBNIA_00001 478 14 Skin 0.15 protein_coding synonymous_variant LOW 378A>G Leu126Leu
M0092742 COHJBNIA_00001 914 4 Skin 0.04 protein_coding missense_variant MODERATE 814C>G Gln272Glu
M0092743 COHJBNIA_00002 1082 10 Skin 0.11 protein_coding synonymous_variant LOW 147A>G Gln49Gln
M0092744 COHJBNIA_00002 1104 6 Skin 0.07 protein_coding missense_variant MODERATE 169A>G Ile57Val
M0092745 COHJBNIA_00002 1105 15 Skin 0.16 protein_coding missense_variant MODERATE 170T>C Ile57Thr
M0092746 COHJBNIA_00002 1127 11 Skin 0.12 protein_coding synonymous_variant LOW 192G>A Glu64Glu
M0092747 COHJBNIA_00002 1130 3 Skin 0.03 protein_coding synonymous_variant LOW 195C>T Ser65Ser
M0092748 COHJBNIA_00002 1148 15 Skin 0.16 protein_coding synonymous_variant LOW 213A>G Leu71Leu
M0092749 COHJBNIA_00002 1151 3 Skin 0.03 protein_coding synonymous_variant LOW 216A>G Leu72Leu
M0092750 COHJBNIA_00018 20317 12 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4871T>G None
M0092751 COHJBNIA_00024 20729 18 Skin 0.20 protein_coding synonymous_variant LOW 33C>T Ser11Ser
M0092752 COHJBNIA_00025 21103 43 Skin 0.47 protein_coding synonymous_variant LOW 444A>G Glu148Glu
M0092753 COHJBNIA_00026 21616 17 Skin 0.19 protein_coding missense_variant MODERATE 932T>C Val311Ala
M0092754 COHJBNIA_00026 22011 24 Skin 0.26 protein_coding synonymous_variant LOW 537G>T Ala179Ala
M0092755 COHJBNIA_00026 22416 9 Skin 0.10 protein_coding synonymous_variant LOW 132C>T Asn44Asn
M0092756 COHJBNIA_00027 22752 40 Skin 0.44 protein_coding missense_variant MODERATE 506T>C Val169Ala
M0092757 COHJBNIA_00027 23026 43 Skin 0.47 protein_coding missense_variant MODERATE 232T>C Cys78Arg
M0092758 COHJBNIA_00028 23326 20 Skin 0.22 protein_coding missense_variant MODERATE 1421A>G Gln474Arg
M0092759 COHJBNIA_00028 23532 9 Skin 0.10 protein_coding synonymous_variant LOW 1215G>A Val405Val
M0092760 COHJBNIA_00028 24318 44 Skin 0.48 protein_coding synonymous_variant LOW 429T>A Ala143Ala
M0092761 COHJBNIA_00028 24393 44 Skin 0.48 protein_coding synonymous_variant LOW 354T>G Thr118Thr
M0092762 COHJBNIA_00029 24835 22 Skin 0.24 protein_coding missense_variant MODERATE 465T>G Asp155Glu
M0092763 COHJBNIA_00029 24964 43 Skin 0.47 protein_coding synonymous_variant LOW 336C>T Ser112Ser
M0092764 COHJBNIA_00029 25059 43 Skin 0.47 protein_coding missense_variant MODERATE 241G>A Glu81Lys
M0092765 COHJBNIA_00029 25142 12 Skin 0.13 protein_coding missense_variant MODERATE 158A>G Glu53Gly
M0092766 COHJBNIA_00029 25144 43 Skin 0.47 protein_coding missense_variant MODERATE 156T>G His52Gln
M0092767 COHJBNIA_00029 25153 19 Skin 0.21 protein_coding synonymous_variant LOW 147A>G Arg49Arg
M0092768 COHJBNIA_00029 25246 43 Skin 0.47 protein_coding synonymous_variant LOW 54A>C Ala18Ala
M0092769 COHJBNIA_00024 25315 43 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4554C>T None
M0092770 COHJBNIA_00024 25316 20 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4555G>T None
M0092771 COHJBNIA_00030 25341 20 Skin 0.22 protein_coding synonymous_variant LOW 1200C>T Thr400Thr
M0092772 COHJBNIA_00030 25373 42 Skin 0.46 protein_coding missense_variant MODERATE 1168A>G Thr390Ala
M0092773 COHJBNIA_00030 25457 40 Skin 0.44 protein_coding missense_variant MODERATE 1084G>A Val362Ile
M0092774 COHJBNIA_00030 25503 40 Skin 0.44 protein_coding synonymous_variant LOW 1038T>A Val346Val
M0092775 COHJBNIA_00030 25535 14 Skin 0.15 protein_coding missense_variant MODERATE 1006A>G Met336Val
M0092776 COHJBNIA_00030 25700 28 Skin 0.31 protein_coding synonymous_variant LOW 841T>C Leu281Leu
M0092777 COHJBNIA_00030 25707 37 Skin 0.41 protein_coding missense_variant MODERATE 834G>A Met278Ile
M0092778 COHJBNIA_00030 25929 14 Skin 0.15 protein_coding synonymous_variant LOW 612C>T Gly204Gly
M0092779 COHJBNIA_00030 26268 7 Skin 0.08 protein_coding synonymous_variant LOW 273A>G Val91Val
M0092780 COHJBNIA_00030 26406 12 Skin 0.13 protein_coding synonymous_variant LOW 135C>T Ala45Ala
M0092781 COHJBNIA_00028 24513 19 Skin 0.21 protein_coding synonymous_variant LOW 234T>C Leu78Leu
M0092782 COHJBNIA_00029 24972 22 Skin 0.24 protein_coding missense_variant MODERATE 328C>T Pro110Ser
M0092783 COHJBNIA_00030 25470 21 Skin 0.23 protein_coding synonymous_variant LOW 1071G>A Pro357Pro
M0092784 COHJBNIA_00030 25529 20 Skin 0.22 protein_coding missense_variant MODERATE 1012A>G Ile338Val
M0092785 COHJBNIA_00002 1790 3 Skin 0.03 protein_coding synonymous_variant LOW 855T>C Asp285Asp
M0092786 COHJBNIA_00002 1796 10 Skin 0.11 protein_coding synonymous_variant LOW 861C>T Asp287Asp
M0092787 COHJBNIA_00002 1810 4 Skin 0.04 protein_coding missense_variant MODERATE 875T>C Ile292Thr
M0092788 COHJBNIA_00002 1851 6 Skin 0.07 protein_coding missense_variant MODERATE 916G>A Val306Met
M0092789 COHJBNIA_00003 1883 8 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -92A>G None
M0092790 COHJBNIA_00003 1910 9 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -65A>G None
M0092791 COHJBNIA_00003 1955 13 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -20A>C None
M0092792 COHJBNIA_00003 1959 13 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -16T>C None
M0092793 COHJBNIA_00003 1988 10 Skin 0.11 protein_coding missense_variant MODERATE 14A>C Glu5Ala
M0092794 COHJBNIA_00003 1992 12 Skin 0.13 protein_coding missense_variant MODERATE 18C>A His6Gln
M0092795 COHJBNIA_00003 1997 12 Skin 0.13 protein_coding missense_variant MODERATE 23A>G Asn8Ser
M0092796 COHJBNIA_00003 2005 12 Skin 0.13 protein_coding missense_variant MODERATE 31G>A Gly11Ser
M0092797 COHJBNIA_00003 2031 13 Skin 0.14 protein_coding synonymous_variant LOW 57G>C Leu19Leu
M0092798 COHJBNIA_00003 2081 12 Skin 0.13 protein_coding missense_variant MODERATE 107G>A Arg36Gln
M0092799 COHJBNIA_00003 2122 5 Skin 0.05 protein_coding synonymous_variant LOW 148C>T Leu50Leu
M0092800 COHJBNIA_00003 2134 7 Skin 0.08 protein_coding missense_variant MODERATE 160A>G Thr54Ala
M0092801 COHJBNIA_00003 2135 11 Skin 0.12 protein_coding missense_variant MODERATE 161C>A Thr54Asn
M0092802 COHJBNIA_00003 2154 11 Skin 0.12 protein_coding synonymous_variant LOW 180C>A Ala60Ala
M0092803 COHJBNIA_00003 2160 11 Skin 0.12 protein_coding synonymous_variant LOW 186C>T Val62Val
M0092804 COHJBNIA_00003 2163 12 Skin 0.13 protein_coding synonymous_variant LOW 189C>T Ile63Ile
M0092805 COHJBNIA_00003 2211 14 Skin 0.15 protein_coding synonymous_variant LOW 237A>C Gly79Gly
M0092806 COHJBNIA_00003 2241 14 Skin 0.15 protein_coding synonymous_variant LOW 267A>T Arg89Arg
M0092807 COHJBNIA_00003 2271 15 Skin 0.16 protein_coding synonymous_variant LOW 297G>A Gln99Gln
M0092808 COHJBNIA_00003 2301 12 Skin 0.13 protein_coding synonymous_variant LOW 327T>A Pro109Pro
M0092809 COHJBNIA_00003 2319 11 Skin 0.12 protein_coding synonymous_variant LOW 345G>A Val115Val
M0092810 COHJBNIA_00003 2322 11 Skin 0.12 protein_coding synonymous_variant LOW 348G>A Leu116Leu
M0092811 COHJBNIA_00003 2344 6 Skin 0.07 protein_coding missense_variant MODERATE 370G>A Glu124Lys
M0092812 COHJBNIA_00003 2355 7 Skin 0.08 protein_coding synonymous_variant LOW 381A>G Leu127Leu
M0092813 COHJBNIA_00003 2420 12 Skin 0.13 protein_coding missense_variant MODERATE 446A>G Asn149Ser
M0092814 COHJBNIA_00003 2445 11 Skin 0.12 protein_coding synonymous_variant LOW 471G>A Gln157Gln
M0092815 COHJBNIA_00003 2466 10 Skin 0.11 protein_coding synonymous_variant LOW 492A>G Gln164Gln
M0092816 COHJBNIA_00003 2468 12 Skin 0.13 protein_coding missense_variant MODERATE 494T>C Ile165Thr
M0092817 COHJBNIA_00003 2584 10 Skin 0.11 protein_coding missense_variant MODERATE 610G>C Glu204Gln
M0092818 COHJBNIA_00003 2646 11 Skin 0.12 protein_coding synonymous_variant LOW 672C>G Arg224Arg
M0092819 COHJBNIA_00003 2661 10 Skin 0.11 protein_coding synonymous_variant LOW 687C>T Gly229Gly
M0092820 COHJBNIA_00003 2667 9 Skin 0.10 protein_coding synonymous_variant LOW 693T>C Asp231Asp
M0092821 COHJBNIA_00003 2681 4 Skin 0.04 protein_coding missense_variant MODERATE 707A>G Asp236Gly
M0092822 COHJBNIA_00003 2730 8 Skin 0.09 protein_coding synonymous_variant LOW 756A>G Leu252Leu
M0092823 COHJBNIA_00003 2754 5 Skin 0.05 protein_coding synonymous_variant LOW 780G>A Glu260Glu
M0092824 COHJBNIA_00003 2800 4 Skin 0.04 protein_coding missense_variant MODERATE 826C>T Leu276Phe
M0092825 COHJBNIA_00003 2826 10 Skin 0.11 protein_coding synonymous_variant LOW 852G>A Thr284Thr
M0092826 COHJBNIA_00004 2981 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -29T>C None
M0092827 COHJBNIA_00004 3019 6 Skin 0.07 protein_coding missense_variant MODERATE 10A>G Ile4Val
M0092828 COHJBNIA_00004 3039 6 Skin 0.07 protein_coding synonymous_variant LOW 30A>G Glu10Glu
M0092829 COHJBNIA_00004 3047 11 Skin 0.12 protein_coding missense_variant MODERATE 38G>C Gly13Ala
M0092830 COHJBNIA_00004 3069 11 Skin 0.12 protein_coding synonymous_variant LOW 60T>C Ile20Ile
M0092831 COHJBNIA_00004 3105 10 Skin 0.11 protein_coding synonymous_variant LOW 96A>C Pro32Pro
M0092832 COHJBNIA_00004 3106 8 Skin 0.09 protein_coding missense_variant MODERATE 97A>T Ser33Cys
M0092833 COHJBNIA_00004 3107 8 Skin 0.09 protein_coding missense_variant MODERATE 98G>A Ser33Asn
M0092834 COHJBNIA_00004 3111 7 Skin 0.08 protein_coding synonymous_variant LOW 102T>C Gly34Gly
M0092835 COHJBNIA_00004 3113 10 Skin 0.11 protein_coding missense_variant MODERATE 104G>T Ser35Ile
M0092836 COHJBNIA_00004 3120 9 Skin 0.10 protein_coding synonymous_variant LOW 111C>G Pro37Pro
M0092837 COHJBNIA_00004 3151 7 Skin 0.08 protein_coding missense_variant MODERATE 142G>A Asp48Asn
M0092838 COHJBNIA_00004 3197 11 Skin 0.12 protein_coding missense_variant MODERATE 188T>C Leu63Pro
M0092839 COHJBNIA_00004 3207 9 Skin 0.10 protein_coding stop_lost&splice_region_variant HIGH 198A>C Ter66Cysext*?
M0092840 COHJBNIA_00005 3251 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -37C>T None
M0092841 COHJBNIA_00005 3259 8 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -29C>A None
M0092842 COHJBNIA_00005 3355 6 Skin 0.07 protein_coding missense_variant MODERATE 68G>C Arg23Pro
M0092843 COHJBNIA_00005 3444 6 Skin 0.07 protein_coding stop_gained HIGH 157C>T Gln53*
M0092844 COHJBNIA_00005 3474 7 Skin 0.08 protein_coding missense_variant MODERATE 187G>A Gly63Ser
M0092845 COHJBNIA_00005 3570 6 Skin 0.07 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0092846 COHJBNIA_00005 3573 6 Skin 0.07 protein_coding missense_variant MODERATE 286G>T Asp96Tyr
M0092847 COHJBNIA_00005 3590 8 Skin 0.09 protein_coding synonymous_variant LOW 303A>G Ser101Ser
M0092848 COHJBNIA_00005 3608 5 Skin 0.05 protein_coding synonymous_variant LOW 321C>T Ala107Ala
M0092849 COHJBNIA_00005 3647 6 Skin 0.07 protein_coding synonymous_variant LOW 360A>G Thr120Thr
M0092850 COHJBNIA_00005 3703 6 Skin 0.07 protein_coding missense_variant MODERATE 416C>T Ala139Val
M0092851 COHJBNIA_00005 3765 8 Skin 0.09 protein_coding missense_variant MODERATE 478C>T Leu160Phe
M0092852 COHJBNIA_00005 3789 8 Skin 0.09 protein_coding missense_variant MODERATE 502A>G Asn168Asp
M0092853 COHJBNIA_00005 3929 6 Skin 0.07 protein_coding synonymous_variant LOW 642C>T Ala214Ala
M0092854 COHJBNIA_00005 3933 8 Skin 0.09 protein_coding stop_lost&splice_region_variant HIGH 646T>C Ter216Glnext*?
M0092855 COHJBNIA_00006 3980 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -121C>T None
M0092856 COHJBNIA_00006 4031 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -70T>C None
M0092857 COHJBNIA_00006 4075 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -26A>G None
M0092858 COHJBNIA_00006 4207 6 Skin 0.07 protein_coding missense_variant MODERATE 107A>G His36Arg
M0092859 COHJBNIA_00022 19518 8 Skin 0.09 protein_coding synonymous_variant LOW 202T>C Leu68Leu
M0092860 COHJBNIA_00022 19520 8 Skin 0.09 protein_coding missense_variant MODERATE 204A>C Leu68Phe
M0092861 COHJBNIA_00022 19523 9 Skin 0.10 protein_coding synonymous_variant LOW 207T>C Asn69Asn
M0092862 COHJBNIA_00022 19526 8 Skin 0.09 protein_coding synonymous_variant LOW 210C>T Phe70Phe
M0092863 COHJBNIA_00018 20146 15 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4700A>G None
M0092864 COHJBNIA_00025 21448 31 Skin 0.34 protein_coding synonymous_variant LOW 99C>T Ile33Ile
M0092865 COHJBNIA_00024 20416 6 Skin 0.07 protein_coding missense_variant MODERATE 346G>C Asp116His
M0092866 COHJBNIA_00025 21412 5 Skin 0.05 protein_coding missense_variant MODERATE 135G>A Met45Ile
M0092867 COHJBNIA_00028 23378 3 Skin 0.03 protein_coding synonymous_variant LOW 1369T>C Leu457Leu
M0092868 COHJBNIA_00028 23414 3 Skin 0.03 protein_coding missense_variant MODERATE 1333A>C Thr445Pro
M0092869 COHJBNIA_00028 23436 3 Skin 0.03 protein_coding synonymous_variant LOW 1311A>G Leu437Leu
M0092870 COHJBNIA_00028 23509 3 Skin 0.03 protein_coding missense_variant MODERATE 1238G>A Gly413Asp
M0092871 COHJBNIA_00028 23548 3 Skin 0.03 protein_coding missense_variant MODERATE 1199G>A Ser400Asn
M0092872 COHJBNIA_00028 24314 8 Skin 0.09 protein_coding missense_variant MODERATE 433G>A Val145Ile
M0092873 COHJBNIA_00029 24982 6 Skin 0.07 protein_coding synonymous_variant LOW 318C>A Arg106Arg
M0092874 COHJBNIA_00030 25491 4 Skin 0.04 protein_coding synonymous_variant LOW 1050G>A Thr350Thr
M0092875 COHJBNIA_00001 187 9 Skin 0.10 protein_coding synonymous_variant LOW 87G>T Ala29Ala
M0092876 COHJBNIA_00001 241 14 Skin 0.15 protein_coding synonymous_variant LOW 141C>T Ala47Ala
M0092877 COHJBNIA_00001 281 9 Skin 0.10 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0092878 COHJBNIA_00001 878 8 Skin 0.09 protein_coding synonymous_variant LOW 778T>C Leu260Leu
M0092879 COHJBNIA_00002 974 3 Skin 0.03 protein_coding synonymous_variant LOW 39A>G Leu13Leu
M0092880 COHJBNIA_00002 977 3 Skin 0.03 protein_coding synonymous_variant LOW 42T>A Ala14Ala
M0092881 COHJBNIA_00002 1025 3 Skin 0.03 protein_coding missense_variant MODERATE 90T>G Asp30Glu
M0092882 COHJBNIA_00002 1415 7 Skin 0.08 protein_coding synonymous_variant LOW 480T>C Asp160Asp
M0092883 COHJBNIA_00002 1418 6 Skin 0.07 protein_coding synonymous_variant LOW 483T>C Arg161Arg
M0092884 COHJBNIA_00002 1451 8 Skin 0.09 protein_coding synonymous_variant LOW 516T>C Asp172Asp
M0092885 COHJBNIA_00002 1499 4 Skin 0.04 protein_coding synonymous_variant LOW 564G>A Leu188Leu
M0092886 COHJBNIA_00002 1502 4 Skin 0.04 protein_coding synonymous_variant LOW 567T>C Ser189Ser
M0092887 COHJBNIA_00002 1681 10 Skin 0.11 protein_coding missense_variant MODERATE 746A>G Tyr249Cys
M0092888 COHJBNIA_00002 1682 15 Skin 0.16 protein_coding synonymous_variant LOW 747C>T Tyr249Tyr
M0092889 COHJBNIA_00002 1694 3 Skin 0.03 protein_coding synonymous_variant LOW 759C>T Ala253Ala
M0092890 COHJBNIA_00002 1697 4 Skin 0.04 protein_coding synonymous_variant LOW 762G>A Ala254Ala
M0092891 COHJBNIA_00002 1706 3 Skin 0.03 protein_coding synonymous_variant LOW 771C>T Ile257Ile
M0092892 COHJBNIA_00002 1724 9 Skin 0.10 protein_coding synonymous_variant LOW 789C>A Gly263Gly
M0092893 COHJBNIA_00002 1820 11 Skin 0.12 protein_coding synonymous_variant LOW 885G>A Glu295Glu
M0092894 COHJBNIA_00003 2064 3 Skin 0.03 protein_coding synonymous_variant LOW 90C>T Ala30Ala
M0092895 COHJBNIA_00003 2092 5 Skin 0.05 protein_coding missense_variant MODERATE 118C>A Leu40Met
M0092896 COHJBNIA_00003 2112 7 Skin 0.08 protein_coding synonymous_variant LOW 138G>A Gly46Gly
M0092897 COHJBNIA_00003 2116 7 Skin 0.08 protein_coding missense_variant MODERATE 142G>A Asp48Asn
M0092898 COHJBNIA_00003 2121 7 Skin 0.08 protein_coding synonymous_variant LOW 147T>C Ile49Ile
M0092899 COHJBNIA_00003 2508 3 Skin 0.03 protein_coding synonymous_variant LOW 534C>T Phe178Phe
M0092900 COHJBNIA_00003 2529 3 Skin 0.03 protein_coding synonymous_variant LOW 555C>T Asp185Asp
M0092901 COHJBNIA_00003 2535 5 Skin 0.05 protein_coding synonymous_variant LOW 561T>C Leu187Leu
M0092902 COHJBNIA_00003 2937 3 Skin 0.03 protein_coding synonymous_variant LOW 963C>T Asn321Asn
M0092903 COHJBNIA_00003 2484 4 Skin 0.04 protein_coding missense_variant MODERATE 510G>T Gln170His
M0092904 COHJBNIA_00003 2539 3 Skin 0.03 protein_coding synonymous_variant LOW 565C>T Leu189Leu
M0092905 COHJBNIA_00003 2856 5 Skin 0.05 protein_coding synonymous_variant LOW 882T>C Asn294Asn
M0092906 COHJBNIA_00028 23710 19 Skin 0.21 protein_coding missense_variant MODERATE 1037T>C Val346Ala
M0092907 COHJBNIA_00028 24128 6 Skin 0.07 protein_coding missense_variant MODERATE 619G>A Asp207Asn
M0092908 COHJBNIA_00026 22098 4 Skin 0.04 protein_coding synonymous_variant LOW 450G>C Gly150Gly
M0092909 COHJBNIA_00045 43084 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4390A>G None
M0092910 COHJBNIA_00045 43086 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4392A>G None
M0092911 COHJBNIA_00051 43219 3 Skin 0.03 protein_coding synonymous_variant LOW 222T>C Leu74Leu
M0092912 COHJBNIA_00052 43449 3 Skin 0.03 protein_coding missense_variant MODERATE 260G>A Arg87Lys
M0092913 COHJBNIA_00052 43454 3 Skin 0.03 protein_coding synonymous_variant LOW 255A>G Lys85Lys
M0092914 COHJBNIA_00052 43455 3 Skin 0.03 protein_coding missense_variant MODERATE 254A>G Lys85Arg
M0092915 COHJBNIA_00024 20558 4 Skin 0.04 protein_coding synonymous_variant LOW 204C>T Val68Val
M0092916 COHJBNIA_00026 21840 3 Skin 0.03 protein_coding synonymous_variant LOW 708G>A Glu236Glu
M0092917 COHJBNIA_00026 22264 3 Skin 0.03 protein_coding missense_variant MODERATE 284C>T Thr95Ile
M0092918 COHJBNIA_00026 22276 3 Skin 0.03 protein_coding missense_variant MODERATE 272C>G Thr91Arg
M0092919 COHJBNIA_00005 3252 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -36A>G None
M0092920 COHJBNIA_00005 3477 5 Skin 0.05 protein_coding missense_variant MODERATE 190G>A Gly64Ser
M0092921 COHJBNIA_00005 3648 5 Skin 0.05 protein_coding missense_variant MODERATE 361G>A Gly121Ser
M0092922 COHJBNIA_00003 2061 5 Skin 0.05 protein_coding synonymous_variant LOW 87A>C Arg29Arg
M0092923 COHJBNIA_00001 27 8 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -74G>A None
M0092924 COHJBNIA_00001 781 9 Skin 0.10 protein_coding synonymous_variant LOW 681T>C Asn227Asn
M0092925 COHJBNIA_00001 784 9 Skin 0.10 protein_coding synonymous_variant LOW 684G>A Gln228Gln
M0092926 COHJBNIA_00001 790 9 Skin 0.10 protein_coding synonymous_variant LOW 690T>C Ala230Ala
M0092927 COHJBNIA_00001 805 8 Skin 0.09 protein_coding synonymous_variant LOW 705T>C Ser235Ser
M0092928 COHJBNIA_00001 808 8 Skin 0.09 protein_coding synonymous_variant LOW 708C>T Ile236Ile
M0092929 COHJBNIA_00001 813 8 Skin 0.09 protein_coding missense_variant MODERATE 713G>A Arg238Lys
M0092930 COHJBNIA_00001 817 8 Skin 0.09 protein_coding synonymous_variant LOW 717T>C Ile239Ile
M0092931 COHJBNIA_00001 824 8 Skin 0.09 protein_coding missense_variant MODERATE 724A>T Thr242Ser
M0092932 COHJBNIA_00001 832 8 Skin 0.09 protein_coding synonymous_variant LOW 732G>A Lys244Lys
M0092933 COHJBNIA_00002 1391 5 Skin 0.05 protein_coding synonymous_variant LOW 456T>C Arg152Arg
M0092934 COHJBNIA_00002 1797 3 Skin 0.03 protein_coding missense_variant MODERATE 862G>C Glu288Gln
M0092935 COHJBNIA_00006 4322 3 Skin 0.03 protein_coding synonymous_variant LOW 222T>C Ile74Ile
M0092936 COHJBNIA_00006 4341 3 Skin 0.03 protein_coding missense_variant MODERATE 241G>A Val81Ile
M0092937 COHJBNIA_00063 56080 3 Skin 0.03 protein_coding stop_lost&splice_region_variant HIGH 566A>G Ter189Trpext*?
M0092938 COHJBNIA_00063 56421 3 Skin 0.03 protein_coding synonymous_variant LOW 225A>G Lys75Lys
M0092939 COHJBNIA_00003 2475 3 Skin 0.03 protein_coding synonymous_variant LOW 501A>C Pro167Pro
M0092940 COHJBNIA_00003 2476 3 Skin 0.03 protein_coding missense_variant MODERATE 502G>A Glu168Lys
M0092941 COHJBNIA_00027 23245 3 Skin 0.03 protein_coding missense_variant MODERATE 13C>A Gln5Lys
M0092942 COHJBNIA_00001 799 3 Skin 0.03 protein_coding synonymous_variant LOW 699A>G Gln233Gln
M0092943 COHJBNIA_00001 811 5 Skin 0.05 protein_coding synonymous_variant LOW 711A>G Gln237Gln
M0092944 COHJBNIA_00001 259 3 Skin 0.03 protein_coding synonymous_variant LOW 159C>T Ile53Ile
M0092945 COHJBNIA_00002 1596 6 Skin 0.07 protein_coding synonymous_variant LOW 661C>T Leu221Leu
M0092946 COHJBNIA_00003 2736 4 Skin 0.04 protein_coding synonymous_variant LOW 762A>T Thr254Thr
M0092947 COHJBNIA_00003 2775 3 Skin 0.03 protein_coding synonymous_variant LOW 801T>C Phe267Phe
M0092948 COHJBNIA_00003 2778 3 Skin 0.03 protein_coding synonymous_variant LOW 804T>C Tyr268Tyr
M0092949 COHJBNIA_00028 23760 3 Skin 0.03 protein_coding synonymous_variant LOW 987A>G Gln329Gln
M0092950 COHJBNIA_00002 1537 3 Skin 0.03 protein_coding missense_variant MODERATE 602A>G Asn201Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term