Annotation Categories of the Plasmid Cluster
Summary of the plasmid cluster
Basic Information about the Plasmid Cluster
Cluster Information |
Plasmid Cluster ID |
C525 |
Reference Plasmid |
NZ_CP025864.1 |
Reference Plasmid Size |
36127 |
Reference Plasmid GC Content |
0.41 |
Reference Plasmid Mobility Type |
conjugative |
Mutation sites in the plasmid cluster
The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..
mutid |
gname |
pos |
count |
tissue |
frequnt |
biotype |
consequence |
impact |
nucchange |
aachange |
M0167774 |
NIAJAJGG_00001 |
469 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
435T>C |
Gly145Gly |
M0167775 |
NIAJAJGG_00001 |
1138 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1104G>A |
Arg368Arg |
M0167776 |
NIAJAJGG_00001 |
1268 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1234C>T |
Leu412Leu |
M0167777 |
NIAJAJGG_00001 |
1339 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1305A>C |
Gly435Gly |
M0167778 |
NIAJAJGG_00001 |
1762 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1728A>G |
Thr576Thr |
M0167779 |
NIAJAJGG_00002 |
2128 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
262G>A |
Ala88Thr |
M0167780 |
NIAJAJGG_00004 |
3085 |
3 |
Gut |
0.50 |
protein_coding |
stop_lost&splice_region_variant |
HIGH |
406T>C |
Ter136Glnext*? |
M0167781 |
NIAJAJGG_00005 |
3222 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-307T>C |
None |
M0167782 |
NIAJAJGG_00005 |
3529 |
3 |
Gut |
0.50 |
protein_coding |
initiator_codon_variant&non_canonical_start_codon |
LOW |
1T>C |
Leu1? |
M0167783 |
NIAJAJGG_00005 |
3552 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
24C>A |
Ala8Ala |
M0167784 |
NIAJAJGG_00005 |
3633 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
105C>T |
Tyr35Tyr |
M0167785 |
NIAJAJGG_00005 |
3657 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
129G>A |
Gln43Gln |
M0167786 |
NIAJAJGG_00005 |
3680 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
152T>A |
Leu51Gln |
M0167787 |
NIAJAJGG_00005 |
3729 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
201A>G |
Gln67Gln |
M0167788 |
NIAJAJGG_00005 |
3739 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
211A>C |
Arg71Arg |
M0167789 |
NIAJAJGG_00005 |
3783 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
255T>C |
Arg85Arg |
M0167790 |
NIAJAJGG_00005 |
3927 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
399T>C |
Asn133Asn |
M0167791 |
NIAJAJGG_00005 |
3945 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
417C>T |
Asn139Asn |
M0167792 |
NIAJAJGG_00005 |
3975 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
447T>A |
Val149Val |
M0167793 |
NIAJAJGG_00006 |
4010 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-28C>T |
None |
M0167794 |
NIAJAJGG_00006 |
4021 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-17C>T |
None |
M0167795 |
NIAJAJGG_00006 |
4034 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4A>G |
None |
M0167796 |
NIAJAJGG_00006 |
4143 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
106C>A |
Arg36Arg |
M0167797 |
NIAJAJGG_00006 |
4205 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
168A>G |
Leu56Leu |
M0167798 |
NIAJAJGG_00006 |
4226 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
189A>T |
Pro63Pro |
M0167799 |
NIAJAJGG_00006 |
4229 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
192T>C |
Ala64Ala |
M0167800 |
NIAJAJGG_00009 |
5426 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
346C>A |
Gln116Lys |
M0167801 |
NIAJAJGG_00009 |
5512 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
432T>A |
Arg144Arg |
M0167802 |
NIAJAJGG_00009 |
5524 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
444G>T |
Ala148Ala |
M0167803 |
NIAJAJGG_00010 |
5648 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-6A>G |
None |
M0167804 |
NIAJAJGG_00010 |
5779 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
126C>T |
Asn42Asn |
M0167805 |
NIAJAJGG_00010 |
5788 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
135C>T |
Asn45Asn |
M0167806 |
NIAJAJGG_00010 |
5837 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
184G>A |
Val62Ile |
M0167807 |
NIAJAJGG_00010 |
5878 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
225G>A |
Arg75Arg |
M0167808 |
NIAJAJGG_00010 |
6046 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
393C>A |
Gly131Gly |
M0167809 |
NIAJAJGG_00010 |
6271 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
618T>C |
Phe206Phe |
M0167810 |
NIAJAJGG_00010 |
6358 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
705C>T |
Asp235Asp |
M0167811 |
NIAJAJGG_00010 |
6385 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
732T>C |
Ala244Ala |
M0167812 |
NIAJAJGG_00010 |
6505 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
852A>T |
Gly284Gly |
M0167813 |
NIAJAJGG_00010 |
6541 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
888T>C |
Arg296Arg |
M0167814 |
NIAJAJGG_00010 |
6559 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
906A>G |
Arg302Arg |
M0167815 |
NIAJAJGG_00010 |
6616 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
963C>T |
Ala321Ala |
M0167816 |
NIAJAJGG_00010 |
6874 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1221G>T |
Lys407Asn |
M0167817 |
NIAJAJGG_00011 |
6934 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
15G>A |
Leu5Leu |
M0167818 |
NIAJAJGG_00011 |
6935 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
16T>G |
Phe6Val |
M0167819 |
NIAJAJGG_00011 |
6942 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
23G>C |
Gly8Ala |
M0167820 |
NIAJAJGG_00011 |
6943 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
24A>G |
Gly8Gly |
M0167821 |
NIAJAJGG_00011 |
6944 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
25T>C |
Phe9Leu |
M0167822 |
NIAJAJGG_00011 |
6946 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
27T>G |
Phe9Leu |
M0167823 |
NIAJAJGG_00011 |
6955 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
36G>A |
Lys12Lys |
M0167824 |
NIAJAJGG_00011 |
6979 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
60C>T |
Phe20Phe |
M0167825 |
NIAJAJGG_00011 |
6983 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
64A>G |
Ile22Val |
M0167826 |
NIAJAJGG_00011 |
6992 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
73A>G |
Asn25Asp |
M0167827 |
NIAJAJGG_00011 |
7008 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
89A>C |
Gln30Pro |
M0167828 |
NIAJAJGG_00011 |
7041 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
122C>T |
Ala41Val |
M0167829 |
NIAJAJGG_00011 |
7060 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
141T>C |
Cys47Cys |
M0167830 |
NIAJAJGG_00011 |
7073 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
154C>T |
Leu52Leu |
M0167831 |
NIAJAJGG_00011 |
7081 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
162C>T |
Asn54Asn |
M0167832 |
NIAJAJGG_00011 |
7090 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
171A>T |
Val57Val |
M0167833 |
NIAJAJGG_00011 |
7099 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
180T>A |
Ser60Ser |
M0167834 |
NIAJAJGG_00011 |
7153 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
234G>T |
Glu78Asp |
M0167835 |
NIAJAJGG_00011 |
7156 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
237C>T |
Asp79Asp |
M0167836 |
NIAJAJGG_00011 |
7201 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
282A>C |
Thr94Thr |
M0167837 |
NIAJAJGG_00011 |
7208 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
289A>T |
Met97Leu |
M0167838 |
NIAJAJGG_00011 |
7216 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
297A>G |
Ser99Ser |
M0167839 |
NIAJAJGG_00011 |
7246 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
327A>C |
Ala109Ala |
M0167840 |
NIAJAJGG_00011 |
7249 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
330G>A |
Ala110Ala |
M0167841 |
NIAJAJGG_00011 |
7270 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
351C>T |
Cys117Cys |
M0167842 |
NIAJAJGG_00011 |
7273 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
354T>C |
Ile118Ile |
M0167843 |
NIAJAJGG_00011 |
7291 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
372G>A |
Ser124Ser |
M0167844 |
NIAJAJGG_00011 |
7306 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
387C>T |
Ala129Ala |
M0167845 |
NIAJAJGG_00011 |
7342 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
423T>C |
Ile141Ile |
M0167846 |
NIAJAJGG_00011 |
7348 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
429T>G |
Thr143Thr |
M0167847 |
NIAJAJGG_00011 |
7369 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
450G>A |
Gly150Gly |
M0167848 |
NIAJAJGG_00011 |
7378 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
459T>C |
Ala153Ala |
M0167849 |
NIAJAJGG_00011 |
7393 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
474A>G |
Glu158Glu |
M0167850 |
NIAJAJGG_00011 |
7408 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
489T>A |
His163Gln |
M0167851 |
NIAJAJGG_00011 |
7411 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
492A>T |
Pro164Pro |
M0167852 |
NIAJAJGG_00011 |
7453 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
534T>C |
Arg178Arg |
M0167853 |
NIAJAJGG_00011 |
7459 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
540C>T |
Ile180Ile |
M0167854 |
NIAJAJGG_00011 |
7471 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
552A>C |
Lys184Asn |
M0167855 |
NIAJAJGG_00012 |
7643 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
144A>G |
Gln48Gln |
M0167856 |
NIAJAJGG_00012 |
7737 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
238G>T |
Ala80Ser |
M0167857 |
NIAJAJGG_00012 |
7766 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
267A>G |
Glu89Glu |
M0167858 |
NIAJAJGG_00012 |
7862 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
363C>A |
Gly121Gly |
M0167859 |
NIAJAJGG_00012 |
7925 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
426G>A |
Ala142Ala |
M0167860 |
NIAJAJGG_00012 |
7994 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
495C>T |
Ala165Ala |
M0167861 |
NIAJAJGG_00012 |
8009 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
510A>C |
Gly170Gly |
M0167862 |
NIAJAJGG_00012 |
8039 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
540T>G |
Pro180Pro |
M0167863 |
NIAJAJGG_00012 |
8063 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
564C>T |
Gly188Gly |
M0167864 |
NIAJAJGG_00012 |
8093 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
594C>A |
Pro198Pro |
M0167865 |
NIAJAJGG_00012 |
8171 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
672T>C |
Val224Val |
M0167866 |
NIAJAJGG_00012 |
8193 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
694C>A |
Leu232Ile |
M0167867 |
NIAJAJGG_00012 |
8210 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
711A>G |
Lys237Lys |
M0167868 |
NIAJAJGG_00012 |
8216 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
717T>G |
Gly239Gly |
M0167869 |
NIAJAJGG_00012 |
8255 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
756G>A |
Lys252Lys |
M0167870 |
NIAJAJGG_00012 |
8312 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
813A>G |
Ala271Ala |
M0167871 |
NIAJAJGG_00012 |
8342 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
843G>A |
Ala281Ala |
M0167872 |
NIAJAJGG_00012 |
8387 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
888G>A |
Lys296Lys |
M0167873 |
NIAJAJGG_00012 |
8414 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
915G>A |
Thr305Thr |
M0167874 |
NIAJAJGG_00012 |
8433 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
934C>T |
Leu312Leu |
M0167875 |
NIAJAJGG_00012 |
8438 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
939C>T |
Arg313Arg |
M0167876 |
NIAJAJGG_00012 |
8453 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
954A>G |
Ala318Ala |
M0167877 |
NIAJAJGG_00012 |
8494 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
995C>A |
Ala332Glu |
M0167878 |
NIAJAJGG_00012 |
8618 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1119G>A |
Ala373Ala |
M0167879 |
NIAJAJGG_00012 |
8630 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1131A>C |
Thr377Thr |
M0167880 |
NIAJAJGG_00012 |
8776 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1277G>A |
Cys426Tyr |
M0167881 |
NIAJAJGG_00012 |
8912 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1413G>T |
Leu471Leu |
M0167882 |
NIAJAJGG_00012 |
8930 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1431T>C |
Val477Val |
M0167883 |
NIAJAJGG_00012 |
8960 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1461G>A |
Pro487Pro |
M0167884 |
NIAJAJGG_00012 |
8966 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1467C>T |
Phe489Phe |
M0167885 |
NIAJAJGG_00012 |
8999 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1500T>C |
Arg500Arg |
M0167886 |
NIAJAJGG_00012 |
9020 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1521T>C |
Asp507Asp |
M0167887 |
NIAJAJGG_00012 |
9032 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1533A>G |
Lys511Lys |
M0167888 |
NIAJAJGG_00012 |
9039 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1540T>C |
Leu514Leu |
M0167889 |
NIAJAJGG_00012 |
9044 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1545G>A |
Lys515Lys |
M0167890 |
NIAJAJGG_00012 |
9077 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1578C>T |
Gly526Gly |
M0167891 |
NIAJAJGG_00012 |
9080 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1581T>C |
Gly527Gly |
M0167892 |
NIAJAJGG_00012 |
9098 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1599A>C |
Thr533Thr |
M0167893 |
NIAJAJGG_00012 |
9101 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1602T>C |
Arg534Arg |
M0167894 |
NIAJAJGG_00012 |
9104 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1605T>A |
Ala535Ala |
M0167895 |
NIAJAJGG_00012 |
9119 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1620G>A |
Thr540Thr |
M0167896 |
NIAJAJGG_00012 |
9128 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1629G>A |
Lys543Lys |
M0167897 |
NIAJAJGG_00012 |
9146 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1647C>G |
Leu549Leu |
M0167898 |
NIAJAJGG_00012 |
9252 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1753G>A |
Ala585Thr |
M0167899 |
NIAJAJGG_00012 |
9254 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1755T>A |
Ala585Ala |
M0167900 |
NIAJAJGG_00012 |
9260 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1761A>T |
Ile587Ile |
M0167901 |
NIAJAJGG_00012 |
9272 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1773T>C |
Asp591Asp |
M0167902 |
NIAJAJGG_00012 |
9285 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1786C>G |
Gln596Glu |
M0167903 |
NIAJAJGG_00012 |
9347 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1848C>G |
Asp616Glu |
M0167904 |
NIAJAJGG_00012 |
9365 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1866A>T |
Ala622Ala |
M0167905 |
NIAJAJGG_00012 |
9426 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1927A>G |
Ile643Val |
M0167906 |
NIAJAJGG_00012 |
9487 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1988C>T |
Ser663Phe |
M0167907 |
NIAJAJGG_00012 |
9501 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
2002C>A |
Pro668Thr |
M0167908 |
NIAJAJGG_00012 |
9629 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
2130G>T |
Gly710Gly |
M0167909 |
NIAJAJGG_00013 |
9683 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
34C>A |
Arg12Arg |
M0167910 |
NIAJAJGG_00013 |
9739 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
90G>A |
Lys30Lys |
M0167911 |
NIAJAJGG_00013 |
9757 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
108C>A |
Ser36Ser |
M0167912 |
NIAJAJGG_00013 |
9802 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
153T>G |
Val51Val |
M0167913 |
NIAJAJGG_00013 |
9826 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
177G>T |
Val59Val |
M0167914 |
NIAJAJGG_00014 |
9960 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
87G>A |
Glu29Glu |
M0167915 |
NIAJAJGG_00014 |
9961 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
88A>G |
Ile30Val |
M0167916 |
NIAJAJGG_00018 |
10708 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3173T>G |
None |
M0167917 |
NIAJAJGG_00018 |
10721 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3160T>C |
None |
M0167918 |
NIAJAJGG_00016 |
10865 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1286A>T |
Asn429Ile |
M0167919 |
NIAJAJGG_00016 |
10909 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1242G>A |
Thr414Thr |
M0167920 |
NIAJAJGG_00016 |
10920 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
1231T>C |
Tyr411His |
M0167921 |
NIAJAJGG_00016 |
10924 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1227G>A |
Gly409Gly |
M0167922 |
NIAJAJGG_00016 |
11293 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
858T>C |
His286His |
M0167923 |
NIAJAJGG_00016 |
11728 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
423A>G |
Ile141Met |
M0167924 |
NIAJAJGG_00017 |
12395 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
724C>A |
Arg242Arg |
M0167925 |
NIAJAJGG_00017 |
12423 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
696A>C |
Leu232Leu |
M0167926 |
NIAJAJGG_00017 |
12564 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
555G>A |
Leu185Leu |
M0167927 |
NIAJAJGG_00016 |
14369 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2219G>C |
None |
M0167928 |
NIAJAJGG_00016 |
15304 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3154G>A |
None |
M0167929 |
NIAJAJGG_00016 |
15335 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3185G>A |
None |
M0167930 |
NIAJAJGG_00016 |
15347 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3197C>T |
None |
M0167931 |
NIAJAJGG_00016 |
15353 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3203A>G |
None |
M0167932 |
NIAJAJGG_00016 |
15373 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3223T>C |
None |
M0167933 |
NIAJAJGG_00016 |
15392 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3242T>C |
None |
M0167934 |
NIAJAJGG_00020 |
15825 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
411G>A |
Leu137Leu |
M0167935 |
NIAJAJGG_00020 |
15837 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
423G>T |
Val141Val |
M0167936 |
NIAJAJGG_00020 |
16075 |
3 |
Gut |
0.50 |
protein_coding |
stop_lost&splice_region_variant |
HIGH |
661T>C |
Ter221Glnext*? |
M0167937 |
NIAJAJGG_00016 |
16542 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4392C>T |
None |
M0167938 |
NIAJAJGG_00023 |
16961 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
66A>C |
Arg22Ser |
M0167939 |
NIAJAJGG_00023 |
16978 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
83G>A |
Arg28Gln |
M0167940 |
NIAJAJGG_00023 |
16991 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
96A>G |
Glu32Glu |
M0167941 |
NIAJAJGG_00023 |
17036 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
141A>G |
Ala47Ala |
M0167942 |
NIAJAJGG_00023 |
17288 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
393T>C |
Tyr131Tyr |
M0167943 |
NIAJAJGG_00017 |
17530 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4412T>C |
None |
M0167944 |
NIAJAJGG_00025 |
18150 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
334T>C |
Leu112Leu |
M0167945 |
NIAJAJGG_00019 |
19387 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4353G>A |
None |
M0167946 |
NIAJAJGG_00019 |
19438 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4404C>T |
None |
M0167947 |
NIAJAJGG_00019 |
19530 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4496A>C |
None |
M0167948 |
NIAJAJGG_00019 |
19663 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4629A>G |
None |
M0167949 |
NIAJAJGG_00019 |
19700 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4666T>C |
None |
M0167950 |
NIAJAJGG_00019 |
19709 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4675T>G |
None |
M0167951 |
NIAJAJGG_00019 |
19864 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4830T>C |
None |
M0167952 |
NIAJAJGG_00019 |
19950 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4916A>G |
None |
M0167953 |
NIAJAJGG_00024 |
20205 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2305T>C |
None |
M0167954 |
NIAJAJGG_00024 |
20286 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2386A>G |
None |
M0167955 |
NIAJAJGG_00030 |
21628 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
168T>C |
Leu56Leu |
M0167956 |
NIAJAJGG_00030 |
21681 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
221T>C |
Ile74Thr |
M0167957 |
NIAJAJGG_00032 |
22098 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
96A>G |
Gln32Gln |
M0167958 |
NIAJAJGG_00032 |
22255 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
253A>G |
Thr85Ala |
M0167959 |
NIAJAJGG_00033 |
22457 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
83T>G |
Ile28Arg |
M0167960 |
NIAJAJGG_00025 |
23334 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4851T>G |
None |
M0167961 |
NIAJAJGG_00025 |
23341 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4858C>T |
None |
M0167962 |
NIAJAJGG_00025 |
23350 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4867T>C |
None |
M0167963 |
NIAJAJGG_00038 |
24962 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
1032C>T |
Ser344Ser |
M0167964 |
NIAJAJGG_00036 |
25098 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1860C>A |
None |
M0167965 |
NIAJAJGG_00036 |
25183 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1945A>G |
None |
M0167966 |
NIAJAJGG_00036 |
25234 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1996A>C |
None |
M0167967 |
NIAJAJGG_00036 |
25245 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2007G>A |
None |
M0167968 |
NIAJAJGG_00036 |
25261 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2023A>G |
None |
M0167969 |
NIAJAJGG_00036 |
25262 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2024C>T |
None |
M0167970 |
NIAJAJGG_00036 |
25263 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2025T>C |
None |
M0167971 |
NIAJAJGG_00036 |
25271 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2033T>C |
None |
M0167972 |
NIAJAJGG_00036 |
25332 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2094G>A |
None |
M0167973 |
NIAJAJGG_00036 |
25666 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2428G>A |
None |
M0167974 |
NIAJAJGG_00040 |
26636 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
494T>A |
Ile165Lys |
M0167975 |
NIAJAJGG_00042 |
27596 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
514G>T |
Ala172Ser |
M0167976 |
NIAJAJGG_00042 |
29140 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
2058G>A |
Gly686Gly |
M0167977 |
NIAJAJGG_00042 |
29261 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
2179T>C |
Leu727Leu |
M0167978 |
NIAJAJGG_00042 |
29623 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
2541C>T |
Ser847Ser |
M0167979 |
NIAJAJGG_00043 |
30227 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
381T>C |
Cys127Cys |
M0167980 |
NIAJAJGG_00044 |
30617 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
12A>C |
Ile4Ile |
M0167981 |
NIAJAJGG_00046 |
32182 |
3 |
Gut |
0.50 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-95C>T |
None |
M0167982 |
NIAJAJGG_00046 |
32465 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
189A>G |
Thr63Thr |
M0167983 |
NIAJAJGG_00047 |
33102 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
108A>C |
Ile36Ile |
M0167984 |
NIAJAJGG_00047 |
33516 |
3 |
Gut |
0.50 |
protein_coding |
missense_variant |
MODERATE |
522T>G |
Asn174Lys |
M0167985 |
NIAJAJGG_00048 |
34385 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
465G>A |
Gln155Gln |
M0167986 |
NIAJAJGG_00048 |
34568 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
648T>C |
Pro216Pro |
M0167987 |
NIAJAJGG_00048 |
34835 |
3 |
Gut |
0.50 |
protein_coding |
synonymous_variant |
LOW |
915T>A |
Ser305Ser |
M0167988 |
NIAJAJGG_00043 |
35127 |
3 |
Gut |
0.50 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4522G>T |
None |
M0167989 |
NIAJAJGG_00043 |
35502 |
3 |
Gut |
0.50 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4897A>C |
None |
Analysis of virulence factors contributing to bacterial pathogenicity
This table presents virulence factors identified within the plasmid cluster.
Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.
Gene Name |
vf_gene_id |
vf_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
vf_category |
gene_description |
condition |
Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact
This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.
Gene Name |
compound |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
group |
Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents
This table presents antimicrobial resistance genes identified within the plasmid cluster.
Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.
Gene Name |
aro_accession |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
drug_class |
amr_gene_family |
resistance_mechanism |
Analysis of pathogenicity genes to explore pathogen-host interactions
This table presents host pathogen-host interactions within the plasmid cluster.
Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.
Gene Name |
phi_molconn_id |
host gene_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
host_descripton |
disease_name |
function |
phenotype_of_mutant |
Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation
This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.
Gene Name |
cazy_id |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
NIAJAJGG_00040 |
AWH59259.1|GH23 |
99.5 |
2.16e-152 |
1 |
215 |
1 |
1 |
Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification
This table presents transport proteins within the plasmid cluster.
Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.
Gene Name |
tcid |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
class_field |
class_term |
subclass |
subclass_term |
family |
family_term |