Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C525
  Reference Plasmid   NZ_CP025864.1
  Reference Plasmid Size   36127
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0167774 NIAJAJGG_00001 469 3 Gut 0.50 protein_coding synonymous_variant LOW 435T>C Gly145Gly
M0167775 NIAJAJGG_00001 1138 3 Gut 0.50 protein_coding synonymous_variant LOW 1104G>A Arg368Arg
M0167776 NIAJAJGG_00001 1268 3 Gut 0.50 protein_coding synonymous_variant LOW 1234C>T Leu412Leu
M0167777 NIAJAJGG_00001 1339 3 Gut 0.50 protein_coding synonymous_variant LOW 1305A>C Gly435Gly
M0167778 NIAJAJGG_00001 1762 3 Gut 0.50 protein_coding synonymous_variant LOW 1728A>G Thr576Thr
M0167779 NIAJAJGG_00002 2128 3 Gut 0.50 protein_coding missense_variant MODERATE 262G>A Ala88Thr
M0167780 NIAJAJGG_00004 3085 3 Gut 0.50 protein_coding stop_lost&splice_region_variant HIGH 406T>C Ter136Glnext*?
M0167781 NIAJAJGG_00005 3222 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -307T>C None
M0167782 NIAJAJGG_00005 3529 3 Gut 0.50 protein_coding initiator_codon_variant&non_canonical_start_codon LOW 1T>C Leu1?
M0167783 NIAJAJGG_00005 3552 3 Gut 0.50 protein_coding synonymous_variant LOW 24C>A Ala8Ala
M0167784 NIAJAJGG_00005 3633 3 Gut 0.50 protein_coding synonymous_variant LOW 105C>T Tyr35Tyr
M0167785 NIAJAJGG_00005 3657 3 Gut 0.50 protein_coding synonymous_variant LOW 129G>A Gln43Gln
M0167786 NIAJAJGG_00005 3680 3 Gut 0.50 protein_coding missense_variant MODERATE 152T>A Leu51Gln
M0167787 NIAJAJGG_00005 3729 3 Gut 0.50 protein_coding synonymous_variant LOW 201A>G Gln67Gln
M0167788 NIAJAJGG_00005 3739 3 Gut 0.50 protein_coding synonymous_variant LOW 211A>C Arg71Arg
M0167789 NIAJAJGG_00005 3783 3 Gut 0.50 protein_coding synonymous_variant LOW 255T>C Arg85Arg
M0167790 NIAJAJGG_00005 3927 3 Gut 0.50 protein_coding synonymous_variant LOW 399T>C Asn133Asn
M0167791 NIAJAJGG_00005 3945 3 Gut 0.50 protein_coding synonymous_variant LOW 417C>T Asn139Asn
M0167792 NIAJAJGG_00005 3975 3 Gut 0.50 protein_coding synonymous_variant LOW 447T>A Val149Val
M0167793 NIAJAJGG_00006 4010 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -28C>T None
M0167794 NIAJAJGG_00006 4021 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -17C>T None
M0167795 NIAJAJGG_00006 4034 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4A>G None
M0167796 NIAJAJGG_00006 4143 3 Gut 0.50 protein_coding synonymous_variant LOW 106C>A Arg36Arg
M0167797 NIAJAJGG_00006 4205 3 Gut 0.50 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0167798 NIAJAJGG_00006 4226 3 Gut 0.50 protein_coding synonymous_variant LOW 189A>T Pro63Pro
M0167799 NIAJAJGG_00006 4229 3 Gut 0.50 protein_coding synonymous_variant LOW 192T>C Ala64Ala
M0167800 NIAJAJGG_00009 5426 3 Gut 0.50 protein_coding missense_variant MODERATE 346C>A Gln116Lys
M0167801 NIAJAJGG_00009 5512 3 Gut 0.50 protein_coding synonymous_variant LOW 432T>A Arg144Arg
M0167802 NIAJAJGG_00009 5524 3 Gut 0.50 protein_coding synonymous_variant LOW 444G>T Ala148Ala
M0167803 NIAJAJGG_00010 5648 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -6A>G None
M0167804 NIAJAJGG_00010 5779 3 Gut 0.50 protein_coding synonymous_variant LOW 126C>T Asn42Asn
M0167805 NIAJAJGG_00010 5788 3 Gut 0.50 protein_coding synonymous_variant LOW 135C>T Asn45Asn
M0167806 NIAJAJGG_00010 5837 3 Gut 0.50 protein_coding missense_variant MODERATE 184G>A Val62Ile
M0167807 NIAJAJGG_00010 5878 3 Gut 0.50 protein_coding synonymous_variant LOW 225G>A Arg75Arg
M0167808 NIAJAJGG_00010 6046 3 Gut 0.50 protein_coding synonymous_variant LOW 393C>A Gly131Gly
M0167809 NIAJAJGG_00010 6271 3 Gut 0.50 protein_coding synonymous_variant LOW 618T>C Phe206Phe
M0167810 NIAJAJGG_00010 6358 3 Gut 0.50 protein_coding synonymous_variant LOW 705C>T Asp235Asp
M0167811 NIAJAJGG_00010 6385 3 Gut 0.50 protein_coding synonymous_variant LOW 732T>C Ala244Ala
M0167812 NIAJAJGG_00010 6505 3 Gut 0.50 protein_coding synonymous_variant LOW 852A>T Gly284Gly
M0167813 NIAJAJGG_00010 6541 3 Gut 0.50 protein_coding synonymous_variant LOW 888T>C Arg296Arg
M0167814 NIAJAJGG_00010 6559 3 Gut 0.50 protein_coding synonymous_variant LOW 906A>G Arg302Arg
M0167815 NIAJAJGG_00010 6616 3 Gut 0.50 protein_coding synonymous_variant LOW 963C>T Ala321Ala
M0167816 NIAJAJGG_00010 6874 3 Gut 0.50 protein_coding missense_variant MODERATE 1221G>T Lys407Asn
M0167817 NIAJAJGG_00011 6934 3 Gut 0.50 protein_coding synonymous_variant LOW 15G>A Leu5Leu
M0167818 NIAJAJGG_00011 6935 3 Gut 0.50 protein_coding missense_variant MODERATE 16T>G Phe6Val
M0167819 NIAJAJGG_00011 6942 3 Gut 0.50 protein_coding missense_variant MODERATE 23G>C Gly8Ala
M0167820 NIAJAJGG_00011 6943 3 Gut 0.50 protein_coding synonymous_variant LOW 24A>G Gly8Gly
M0167821 NIAJAJGG_00011 6944 3 Gut 0.50 protein_coding missense_variant MODERATE 25T>C Phe9Leu
M0167822 NIAJAJGG_00011 6946 3 Gut 0.50 protein_coding missense_variant MODERATE 27T>G Phe9Leu
M0167823 NIAJAJGG_00011 6955 3 Gut 0.50 protein_coding synonymous_variant LOW 36G>A Lys12Lys
M0167824 NIAJAJGG_00011 6979 3 Gut 0.50 protein_coding synonymous_variant LOW 60C>T Phe20Phe
M0167825 NIAJAJGG_00011 6983 3 Gut 0.50 protein_coding missense_variant MODERATE 64A>G Ile22Val
M0167826 NIAJAJGG_00011 6992 3 Gut 0.50 protein_coding missense_variant MODERATE 73A>G Asn25Asp
M0167827 NIAJAJGG_00011 7008 3 Gut 0.50 protein_coding missense_variant MODERATE 89A>C Gln30Pro
M0167828 NIAJAJGG_00011 7041 3 Gut 0.50 protein_coding missense_variant MODERATE 122C>T Ala41Val
M0167829 NIAJAJGG_00011 7060 3 Gut 0.50 protein_coding synonymous_variant LOW 141T>C Cys47Cys
M0167830 NIAJAJGG_00011 7073 3 Gut 0.50 protein_coding synonymous_variant LOW 154C>T Leu52Leu
M0167831 NIAJAJGG_00011 7081 3 Gut 0.50 protein_coding synonymous_variant LOW 162C>T Asn54Asn
M0167832 NIAJAJGG_00011 7090 3 Gut 0.50 protein_coding synonymous_variant LOW 171A>T Val57Val
M0167833 NIAJAJGG_00011 7099 3 Gut 0.50 protein_coding synonymous_variant LOW 180T>A Ser60Ser
M0167834 NIAJAJGG_00011 7153 3 Gut 0.50 protein_coding missense_variant MODERATE 234G>T Glu78Asp
M0167835 NIAJAJGG_00011 7156 3 Gut 0.50 protein_coding synonymous_variant LOW 237C>T Asp79Asp
M0167836 NIAJAJGG_00011 7201 3 Gut 0.50 protein_coding synonymous_variant LOW 282A>C Thr94Thr
M0167837 NIAJAJGG_00011 7208 3 Gut 0.50 protein_coding missense_variant MODERATE 289A>T Met97Leu
M0167838 NIAJAJGG_00011 7216 3 Gut 0.50 protein_coding synonymous_variant LOW 297A>G Ser99Ser
M0167839 NIAJAJGG_00011 7246 3 Gut 0.50 protein_coding synonymous_variant LOW 327A>C Ala109Ala
M0167840 NIAJAJGG_00011 7249 3 Gut 0.50 protein_coding synonymous_variant LOW 330G>A Ala110Ala
M0167841 NIAJAJGG_00011 7270 3 Gut 0.50 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0167842 NIAJAJGG_00011 7273 3 Gut 0.50 protein_coding synonymous_variant LOW 354T>C Ile118Ile
M0167843 NIAJAJGG_00011 7291 3 Gut 0.50 protein_coding synonymous_variant LOW 372G>A Ser124Ser
M0167844 NIAJAJGG_00011 7306 3 Gut 0.50 protein_coding synonymous_variant LOW 387C>T Ala129Ala
M0167845 NIAJAJGG_00011 7342 3 Gut 0.50 protein_coding synonymous_variant LOW 423T>C Ile141Ile
M0167846 NIAJAJGG_00011 7348 3 Gut 0.50 protein_coding synonymous_variant LOW 429T>G Thr143Thr
M0167847 NIAJAJGG_00011 7369 3 Gut 0.50 protein_coding synonymous_variant LOW 450G>A Gly150Gly
M0167848 NIAJAJGG_00011 7378 3 Gut 0.50 protein_coding synonymous_variant LOW 459T>C Ala153Ala
M0167849 NIAJAJGG_00011 7393 3 Gut 0.50 protein_coding synonymous_variant LOW 474A>G Glu158Glu
M0167850 NIAJAJGG_00011 7408 3 Gut 0.50 protein_coding missense_variant MODERATE 489T>A His163Gln
M0167851 NIAJAJGG_00011 7411 3 Gut 0.50 protein_coding synonymous_variant LOW 492A>T Pro164Pro
M0167852 NIAJAJGG_00011 7453 3 Gut 0.50 protein_coding synonymous_variant LOW 534T>C Arg178Arg
M0167853 NIAJAJGG_00011 7459 3 Gut 0.50 protein_coding synonymous_variant LOW 540C>T Ile180Ile
M0167854 NIAJAJGG_00011 7471 3 Gut 0.50 protein_coding missense_variant MODERATE 552A>C Lys184Asn
M0167855 NIAJAJGG_00012 7643 3 Gut 0.50 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0167856 NIAJAJGG_00012 7737 3 Gut 0.50 protein_coding missense_variant MODERATE 238G>T Ala80Ser
M0167857 NIAJAJGG_00012 7766 3 Gut 0.50 protein_coding synonymous_variant LOW 267A>G Glu89Glu
M0167858 NIAJAJGG_00012 7862 3 Gut 0.50 protein_coding synonymous_variant LOW 363C>A Gly121Gly
M0167859 NIAJAJGG_00012 7925 3 Gut 0.50 protein_coding synonymous_variant LOW 426G>A Ala142Ala
M0167860 NIAJAJGG_00012 7994 3 Gut 0.50 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0167861 NIAJAJGG_00012 8009 3 Gut 0.50 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0167862 NIAJAJGG_00012 8039 3 Gut 0.50 protein_coding synonymous_variant LOW 540T>G Pro180Pro
M0167863 NIAJAJGG_00012 8063 3 Gut 0.50 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0167864 NIAJAJGG_00012 8093 3 Gut 0.50 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0167865 NIAJAJGG_00012 8171 3 Gut 0.50 protein_coding synonymous_variant LOW 672T>C Val224Val
M0167866 NIAJAJGG_00012 8193 3 Gut 0.50 protein_coding missense_variant MODERATE 694C>A Leu232Ile
M0167867 NIAJAJGG_00012 8210 3 Gut 0.50 protein_coding synonymous_variant LOW 711A>G Lys237Lys
M0167868 NIAJAJGG_00012 8216 3 Gut 0.50 protein_coding synonymous_variant LOW 717T>G Gly239Gly
M0167869 NIAJAJGG_00012 8255 3 Gut 0.50 protein_coding synonymous_variant LOW 756G>A Lys252Lys
M0167870 NIAJAJGG_00012 8312 3 Gut 0.50 protein_coding synonymous_variant LOW 813A>G Ala271Ala
M0167871 NIAJAJGG_00012 8342 3 Gut 0.50 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0167872 NIAJAJGG_00012 8387 3 Gut 0.50 protein_coding synonymous_variant LOW 888G>A Lys296Lys
M0167873 NIAJAJGG_00012 8414 3 Gut 0.50 protein_coding synonymous_variant LOW 915G>A Thr305Thr
M0167874 NIAJAJGG_00012 8433 3 Gut 0.50 protein_coding synonymous_variant LOW 934C>T Leu312Leu
M0167875 NIAJAJGG_00012 8438 3 Gut 0.50 protein_coding synonymous_variant LOW 939C>T Arg313Arg
M0167876 NIAJAJGG_00012 8453 3 Gut 0.50 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0167877 NIAJAJGG_00012 8494 3 Gut 0.50 protein_coding missense_variant MODERATE 995C>A Ala332Glu
M0167878 NIAJAJGG_00012 8618 3 Gut 0.50 protein_coding synonymous_variant LOW 1119G>A Ala373Ala
M0167879 NIAJAJGG_00012 8630 3 Gut 0.50 protein_coding synonymous_variant LOW 1131A>C Thr377Thr
M0167880 NIAJAJGG_00012 8776 3 Gut 0.50 protein_coding missense_variant MODERATE 1277G>A Cys426Tyr
M0167881 NIAJAJGG_00012 8912 3 Gut 0.50 protein_coding synonymous_variant LOW 1413G>T Leu471Leu
M0167882 NIAJAJGG_00012 8930 3 Gut 0.50 protein_coding synonymous_variant LOW 1431T>C Val477Val
M0167883 NIAJAJGG_00012 8960 3 Gut 0.50 protein_coding synonymous_variant LOW 1461G>A Pro487Pro
M0167884 NIAJAJGG_00012 8966 3 Gut 0.50 protein_coding synonymous_variant LOW 1467C>T Phe489Phe
M0167885 NIAJAJGG_00012 8999 3 Gut 0.50 protein_coding synonymous_variant LOW 1500T>C Arg500Arg
M0167886 NIAJAJGG_00012 9020 3 Gut 0.50 protein_coding synonymous_variant LOW 1521T>C Asp507Asp
M0167887 NIAJAJGG_00012 9032 3 Gut 0.50 protein_coding synonymous_variant LOW 1533A>G Lys511Lys
M0167888 NIAJAJGG_00012 9039 3 Gut 0.50 protein_coding synonymous_variant LOW 1540T>C Leu514Leu
M0167889 NIAJAJGG_00012 9044 3 Gut 0.50 protein_coding synonymous_variant LOW 1545G>A Lys515Lys
M0167890 NIAJAJGG_00012 9077 3 Gut 0.50 protein_coding synonymous_variant LOW 1578C>T Gly526Gly
M0167891 NIAJAJGG_00012 9080 3 Gut 0.50 protein_coding synonymous_variant LOW 1581T>C Gly527Gly
M0167892 NIAJAJGG_00012 9098 3 Gut 0.50 protein_coding synonymous_variant LOW 1599A>C Thr533Thr
M0167893 NIAJAJGG_00012 9101 3 Gut 0.50 protein_coding synonymous_variant LOW 1602T>C Arg534Arg
M0167894 NIAJAJGG_00012 9104 3 Gut 0.50 protein_coding synonymous_variant LOW 1605T>A Ala535Ala
M0167895 NIAJAJGG_00012 9119 3 Gut 0.50 protein_coding synonymous_variant LOW 1620G>A Thr540Thr
M0167896 NIAJAJGG_00012 9128 3 Gut 0.50 protein_coding synonymous_variant LOW 1629G>A Lys543Lys
M0167897 NIAJAJGG_00012 9146 3 Gut 0.50 protein_coding synonymous_variant LOW 1647C>G Leu549Leu
M0167898 NIAJAJGG_00012 9252 3 Gut 0.50 protein_coding missense_variant MODERATE 1753G>A Ala585Thr
M0167899 NIAJAJGG_00012 9254 3 Gut 0.50 protein_coding synonymous_variant LOW 1755T>A Ala585Ala
M0167900 NIAJAJGG_00012 9260 3 Gut 0.50 protein_coding synonymous_variant LOW 1761A>T Ile587Ile
M0167901 NIAJAJGG_00012 9272 3 Gut 0.50 protein_coding synonymous_variant LOW 1773T>C Asp591Asp
M0167902 NIAJAJGG_00012 9285 3 Gut 0.50 protein_coding missense_variant MODERATE 1786C>G Gln596Glu
M0167903 NIAJAJGG_00012 9347 3 Gut 0.50 protein_coding missense_variant MODERATE 1848C>G Asp616Glu
M0167904 NIAJAJGG_00012 9365 3 Gut 0.50 protein_coding synonymous_variant LOW 1866A>T Ala622Ala
M0167905 NIAJAJGG_00012 9426 3 Gut 0.50 protein_coding missense_variant MODERATE 1927A>G Ile643Val
M0167906 NIAJAJGG_00012 9487 3 Gut 0.50 protein_coding missense_variant MODERATE 1988C>T Ser663Phe
M0167907 NIAJAJGG_00012 9501 3 Gut 0.50 protein_coding missense_variant MODERATE 2002C>A Pro668Thr
M0167908 NIAJAJGG_00012 9629 3 Gut 0.50 protein_coding synonymous_variant LOW 2130G>T Gly710Gly
M0167909 NIAJAJGG_00013 9683 3 Gut 0.50 protein_coding synonymous_variant LOW 34C>A Arg12Arg
M0167910 NIAJAJGG_00013 9739 3 Gut 0.50 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0167911 NIAJAJGG_00013 9757 3 Gut 0.50 protein_coding synonymous_variant LOW 108C>A Ser36Ser
M0167912 NIAJAJGG_00013 9802 3 Gut 0.50 protein_coding synonymous_variant LOW 153T>G Val51Val
M0167913 NIAJAJGG_00013 9826 3 Gut 0.50 protein_coding synonymous_variant LOW 177G>T Val59Val
M0167914 NIAJAJGG_00014 9960 3 Gut 0.50 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0167915 NIAJAJGG_00014 9961 3 Gut 0.50 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0167916 NIAJAJGG_00018 10708 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3173T>G None
M0167917 NIAJAJGG_00018 10721 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3160T>C None
M0167918 NIAJAJGG_00016 10865 3 Gut 0.50 protein_coding missense_variant MODERATE 1286A>T Asn429Ile
M0167919 NIAJAJGG_00016 10909 3 Gut 0.50 protein_coding synonymous_variant LOW 1242G>A Thr414Thr
M0167920 NIAJAJGG_00016 10920 3 Gut 0.50 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0167921 NIAJAJGG_00016 10924 3 Gut 0.50 protein_coding synonymous_variant LOW 1227G>A Gly409Gly
M0167922 NIAJAJGG_00016 11293 3 Gut 0.50 protein_coding synonymous_variant LOW 858T>C His286His
M0167923 NIAJAJGG_00016 11728 3 Gut 0.50 protein_coding missense_variant MODERATE 423A>G Ile141Met
M0167924 NIAJAJGG_00017 12395 3 Gut 0.50 protein_coding synonymous_variant LOW 724C>A Arg242Arg
M0167925 NIAJAJGG_00017 12423 3 Gut 0.50 protein_coding synonymous_variant LOW 696A>C Leu232Leu
M0167926 NIAJAJGG_00017 12564 3 Gut 0.50 protein_coding synonymous_variant LOW 555G>A Leu185Leu
M0167927 NIAJAJGG_00016 14369 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2219G>C None
M0167928 NIAJAJGG_00016 15304 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3154G>A None
M0167929 NIAJAJGG_00016 15335 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3185G>A None
M0167930 NIAJAJGG_00016 15347 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3197C>T None
M0167931 NIAJAJGG_00016 15353 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3203A>G None
M0167932 NIAJAJGG_00016 15373 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3223T>C None
M0167933 NIAJAJGG_00016 15392 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3242T>C None
M0167934 NIAJAJGG_00020 15825 3 Gut 0.50 protein_coding synonymous_variant LOW 411G>A Leu137Leu
M0167935 NIAJAJGG_00020 15837 3 Gut 0.50 protein_coding synonymous_variant LOW 423G>T Val141Val
M0167936 NIAJAJGG_00020 16075 3 Gut 0.50 protein_coding stop_lost&splice_region_variant HIGH 661T>C Ter221Glnext*?
M0167937 NIAJAJGG_00016 16542 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4392C>T None
M0167938 NIAJAJGG_00023 16961 3 Gut 0.50 protein_coding missense_variant MODERATE 66A>C Arg22Ser
M0167939 NIAJAJGG_00023 16978 3 Gut 0.50 protein_coding missense_variant MODERATE 83G>A Arg28Gln
M0167940 NIAJAJGG_00023 16991 3 Gut 0.50 protein_coding synonymous_variant LOW 96A>G Glu32Glu
M0167941 NIAJAJGG_00023 17036 3 Gut 0.50 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0167942 NIAJAJGG_00023 17288 3 Gut 0.50 protein_coding synonymous_variant LOW 393T>C Tyr131Tyr
M0167943 NIAJAJGG_00017 17530 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4412T>C None
M0167944 NIAJAJGG_00025 18150 3 Gut 0.50 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0167945 NIAJAJGG_00019 19387 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4353G>A None
M0167946 NIAJAJGG_00019 19438 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4404C>T None
M0167947 NIAJAJGG_00019 19530 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4496A>C None
M0167948 NIAJAJGG_00019 19663 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4629A>G None
M0167949 NIAJAJGG_00019 19700 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4666T>C None
M0167950 NIAJAJGG_00019 19709 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4675T>G None
M0167951 NIAJAJGG_00019 19864 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4830T>C None
M0167952 NIAJAJGG_00019 19950 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4916A>G None
M0167953 NIAJAJGG_00024 20205 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2305T>C None
M0167954 NIAJAJGG_00024 20286 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2386A>G None
M0167955 NIAJAJGG_00030 21628 3 Gut 0.50 protein_coding synonymous_variant LOW 168T>C Leu56Leu
M0167956 NIAJAJGG_00030 21681 3 Gut 0.50 protein_coding missense_variant MODERATE 221T>C Ile74Thr
M0167957 NIAJAJGG_00032 22098 3 Gut 0.50 protein_coding synonymous_variant LOW 96A>G Gln32Gln
M0167958 NIAJAJGG_00032 22255 3 Gut 0.50 protein_coding missense_variant MODERATE 253A>G Thr85Ala
M0167959 NIAJAJGG_00033 22457 3 Gut 0.50 protein_coding missense_variant MODERATE 83T>G Ile28Arg
M0167960 NIAJAJGG_00025 23334 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4851T>G None
M0167961 NIAJAJGG_00025 23341 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4858C>T None
M0167962 NIAJAJGG_00025 23350 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4867T>C None
M0167963 NIAJAJGG_00038 24962 3 Gut 0.50 protein_coding synonymous_variant LOW 1032C>T Ser344Ser
M0167964 NIAJAJGG_00036 25098 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1860C>A None
M0167965 NIAJAJGG_00036 25183 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1945A>G None
M0167966 NIAJAJGG_00036 25234 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1996A>C None
M0167967 NIAJAJGG_00036 25245 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2007G>A None
M0167968 NIAJAJGG_00036 25261 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2023A>G None
M0167969 NIAJAJGG_00036 25262 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2024C>T None
M0167970 NIAJAJGG_00036 25263 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2025T>C None
M0167971 NIAJAJGG_00036 25271 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2033T>C None
M0167972 NIAJAJGG_00036 25332 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2094G>A None
M0167973 NIAJAJGG_00036 25666 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2428G>A None
M0167974 NIAJAJGG_00040 26636 3 Gut 0.50 protein_coding missense_variant MODERATE 494T>A Ile165Lys
M0167975 NIAJAJGG_00042 27596 3 Gut 0.50 protein_coding missense_variant MODERATE 514G>T Ala172Ser
M0167976 NIAJAJGG_00042 29140 3 Gut 0.50 protein_coding synonymous_variant LOW 2058G>A Gly686Gly
M0167977 NIAJAJGG_00042 29261 3 Gut 0.50 protein_coding synonymous_variant LOW 2179T>C Leu727Leu
M0167978 NIAJAJGG_00042 29623 3 Gut 0.50 protein_coding synonymous_variant LOW 2541C>T Ser847Ser
M0167979 NIAJAJGG_00043 30227 3 Gut 0.50 protein_coding synonymous_variant LOW 381T>C Cys127Cys
M0167980 NIAJAJGG_00044 30617 3 Gut 0.50 protein_coding synonymous_variant LOW 12A>C Ile4Ile
M0167981 NIAJAJGG_00046 32182 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -95C>T None
M0167982 NIAJAJGG_00046 32465 3 Gut 0.50 protein_coding synonymous_variant LOW 189A>G Thr63Thr
M0167983 NIAJAJGG_00047 33102 3 Gut 0.50 protein_coding synonymous_variant LOW 108A>C Ile36Ile
M0167984 NIAJAJGG_00047 33516 3 Gut 0.50 protein_coding missense_variant MODERATE 522T>G Asn174Lys
M0167985 NIAJAJGG_00048 34385 3 Gut 0.50 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0167986 NIAJAJGG_00048 34568 3 Gut 0.50 protein_coding synonymous_variant LOW 648T>C Pro216Pro
M0167987 NIAJAJGG_00048 34835 3 Gut 0.50 protein_coding synonymous_variant LOW 915T>A Ser305Ser
M0167988 NIAJAJGG_00043 35127 3 Gut 0.50 protein_coding downstream_gene_variant MODIFIER *4522G>T None
M0167989 NIAJAJGG_00043 35502 3 Gut 0.50 protein_coding downstream_gene_variant MODIFIER *4897A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NIAJAJGG_00040 AWH59259.1|GH23 99.5 2.16e-152 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term