Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C534
  Reference Plasmid   NZ_CP026518.1
  Reference Plasmid Size   373067
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0093274 PFCJLHLD_00289 296886 7 Skin 0.28 protein_coding missense_variant MODERATE 458T>G Phe153Cys
M0093275 PFCJLHLD_00290 297436 9 Skin 0.36 protein_coding synonymous_variant LOW 906C>A Arg302Arg
M0093276 PFCJLHLD_00290 297439 9 Skin 0.36 protein_coding synonymous_variant LOW 903C>T Ser301Ser
M0093277 PFCJLHLD_00290 297460 9 Skin 0.36 protein_coding synonymous_variant LOW 882C>T Pro294Pro
M0093278 PFCJLHLD_00290 297505 9 Skin 0.36 protein_coding synonymous_variant LOW 837G>A Ala279Ala
M0093279 PFCJLHLD_00290 297529 9 Skin 0.36 protein_coding missense_variant MODERATE 813C>G Ile271Met
M0093280 PFCJLHLD_00290 297599 9 Skin 0.36 protein_coding missense_variant MODERATE 743T>C Phe248Ser
M0093281 PFCJLHLD_00290 297600 9 Skin 0.36 protein_coding missense_variant MODERATE 742T>G Phe248Val
M0093282 PFCJLHLD_00290 297665 9 Skin 0.36 protein_coding missense_variant MODERATE 677G>A Arg226Gln
M0093283 PFCJLHLD_00290 297667 9 Skin 0.36 protein_coding synonymous_variant LOW 675G>A Ala225Ala
M0093284 PFCJLHLD_00290 297671 9 Skin 0.36 protein_coding missense_variant MODERATE 671A>G Gln224Arg
M0093285 PFCJLHLD_00290 297850 11 Skin 0.44 protein_coding synonymous_variant LOW 492G>A Val164Val
M0093286 PFCJLHLD_00290 297985 11 Skin 0.44 protein_coding synonymous_variant LOW 357A>G Gly119Gly
M0093287 PFCJLHLD_00290 297988 11 Skin 0.44 protein_coding synonymous_variant LOW 354A>G Ala118Ala
M0093288 PFCJLHLD_00290 298045 11 Skin 0.44 protein_coding synonymous_variant LOW 297G>A Pro99Pro
M0093289 PFCJLHLD_00290 298122 12 Skin 0.48 protein_coding synonymous_variant LOW 220C>T Leu74Leu
M0093290 PFCJLHLD_00291 298526 12 Skin 0.48 protein_coding synonymous_variant LOW 883T>C Leu295Leu
M0093291 PFCJLHLD_00291 298658 12 Skin 0.48 protein_coding missense_variant MODERATE 751C>T Leu251Phe
M0093292 PFCJLHLD_00291 298686 12 Skin 0.48 protein_coding synonymous_variant LOW 723G>T Ala241Ala
M0093293 PFCJLHLD_00291 298710 12 Skin 0.48 protein_coding synonymous_variant LOW 699C>T Phe233Phe
M0093294 PFCJLHLD_00291 298741 12 Skin 0.48 protein_coding missense_variant MODERATE 668A>G Gln223Arg
M0093295 PFCJLHLD_00291 298830 12 Skin 0.48 protein_coding synonymous_variant LOW 579G>A Pro193Pro
M0093296 PFCJLHLD_00291 298866 12 Skin 0.48 protein_coding synonymous_variant LOW 543G>A Val181Val
M0093297 PFCJLHLD_00291 298902 12 Skin 0.48 protein_coding synonymous_variant LOW 507G>A Gln169Gln
M0093298 PFCJLHLD_00291 298926 12 Skin 0.48 protein_coding synonymous_variant LOW 483T>C Asp161Asp
M0093299 PFCJLHLD_00291 298950 12 Skin 0.48 protein_coding synonymous_variant LOW 459C>T His153His
M0093300 PFCJLHLD_00291 299022 12 Skin 0.48 protein_coding synonymous_variant LOW 387T>C Asp129Asp
M0093301 PFCJLHLD_00291 299109 12 Skin 0.48 protein_coding synonymous_variant LOW 300G>T Pro100Pro
M0093302 PFCJLHLD_00291 299136 12 Skin 0.48 protein_coding synonymous_variant LOW 273A>C Val91Val
M0093303 PFCJLHLD_00291 299187 12 Skin 0.48 protein_coding synonymous_variant LOW 222T>C Ser74Ser
M0093304 PFCJLHLD_00291 299298 12 Skin 0.48 protein_coding synonymous_variant LOW 111G>A Ala37Ala
M0093305 PFCJLHLD_00291 299358 12 Skin 0.48 protein_coding synonymous_variant LOW 51C>T Val17Val
M0093306 PFCJLHLD_00291 299402 12 Skin 0.48 protein_coding missense_variant MODERATE 7C>T Pro3Ser
M0093307 PFCJLHLD_00285 299413 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4731G>A None
M0093308 PFCJLHLD_00285 299451 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4769A>G None
M0093309 PFCJLHLD_00285 299455 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4773A>G None
M0093310 PFCJLHLD_00285 299456 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4774C>T None
M0093311 PFCJLHLD_00285 299460 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4778T>C None
M0093312 PFCJLHLD_00285 299464 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4782G>A None
M0093313 PFCJLHLD_00285 299469 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4787A>G None
M0093314 PFCJLHLD_00285 299472 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4790C>T None
M0093315 PFCJLHLD_00285 299476 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4794T>C None
M0093316 PFCJLHLD_00285 299482 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4800A>G None
M0093317 PFCJLHLD_00285 299502 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4820A>G None
M0093318 PFCJLHLD_00285 299504 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4822A>G None
M0093319 PFCJLHLD_00285 299505 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4823T>C None
M0093320 PFCJLHLD_00285 299580 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4898T>G None
M0093321 PFCJLHLD_00285 299607 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4925C>G None
M0093322 PFCJLHLD_00285 299611 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4929A>G None
M0093323 PFCJLHLD_00285 299612 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4930A>G None
M0093324 PFCJLHLD_00285 299615 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4933C>G None
M0093325 PFCJLHLD_00285 299631 12 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -4949T>A None
M0093326 PFCJLHLD_00293 300350 12 Skin 0.48 protein_coding synonymous_variant LOW 252T>C Pro84Pro
M0093327 PFCJLHLD_00293 300540 12 Skin 0.48 protein_coding missense_variant MODERATE 442T>C Ser148Pro
M0093328 PFCJLHLD_00293 300635 10 Skin 0.40 protein_coding synonymous_variant LOW 537A>C Val179Val
M0093329 PFCJLHLD_00294 300787 11 Skin 0.44 protein_coding missense_variant MODERATE 26T>C Leu9Pro
M0093330 PFCJLHLD_00294 300788 11 Skin 0.44 protein_coding synonymous_variant LOW 27C>T Leu9Leu
M0093331 PFCJLHLD_00294 300795 11 Skin 0.44 protein_coding missense_variant MODERATE 34G>A Val12Ile
M0093332 PFCJLHLD_00294 300815 11 Skin 0.44 protein_coding synonymous_variant LOW 54C>T Asp18Asp
M0093333 PFCJLHLD_00288 300880 9 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4672A>G None
M0093334 PFCJLHLD_00288 300889 9 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4681C>A None
M0093335 PFCJLHLD_00288 300920 9 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4712C>T None
M0093336 PFCJLHLD_00288 301042 8 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -4834T>C None
M0093337 PFCJLHLD_00288 301076 8 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -4868A>G None
M0093338 PFCJLHLD_00289 301221 6 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -3878C>T None
M0093339 PFCJLHLD_00295 301456 5 Skin 0.20 protein_coding missense_variant MODERATE 178G>A Val60Ile
M0093340 PFCJLHLD_00295 301645 3 Skin 0.12 protein_coding missense_variant MODERATE 367G>A Gly123Ser
M0093341 PFCJLHLD_00026 19321 3 Skin 0.12 protein_coding missense_variant MODERATE 2492T>C Val831Ala
M0093342 PFCJLHLD_00026 19322 3 Skin 0.12 protein_coding missense_variant MODERATE 2491G>A Val831Ile
M0093343 PFCJLHLD_00026 19332 3 Skin 0.12 protein_coding synonymous_variant LOW 2481A>G Ala827Ala
M0093344 PFCJLHLD_00026 19335 3 Skin 0.12 protein_coding synonymous_variant LOW 2478C>G Arg826Arg
M0093345 PFCJLHLD_00026 19344 3 Skin 0.12 protein_coding synonymous_variant LOW 2469T>C Ala823Ala
M0093346 PFCJLHLD_00026 19351 3 Skin 0.12 protein_coding missense_variant MODERATE 2462A>G Asp821Gly
M0093347 PFCJLHLD_00026 19353 3 Skin 0.12 protein_coding synonymous_variant LOW 2460C>T Ser820Ser
M0093348 PFCJLHLD_00026 19355 3 Skin 0.12 protein_coding missense_variant MODERATE 2458T>C Ser820Pro
M0093349 PFCJLHLD_00026 19356 3 Skin 0.12 protein_coding synonymous_variant LOW 2457T>C Arg819Arg
M0093350 PFCJLHLD_00026 19380 3 Skin 0.12 protein_coding synonymous_variant LOW 2433A>G Leu811Leu
M0093351 PFCJLHLD_00026 19407 3 Skin 0.12 protein_coding synonymous_variant LOW 2406G>A Val802Val
M0093352 PFCJLHLD_00026 19458 3 Skin 0.12 protein_coding synonymous_variant LOW 2355G>C Gly785Gly
M0093353 PFCJLHLD_00026 19470 3 Skin 0.12 protein_coding synonymous_variant LOW 2343C>T Tyr781Tyr
M0093354 PFCJLHLD_00026 19491 3 Skin 0.12 protein_coding synonymous_variant LOW 2322T>C Pro774Pro
M0093355 PFCJLHLD_00026 19500 3 Skin 0.12 protein_coding synonymous_variant LOW 2313C>G Val771Val
M0093356 PFCJLHLD_00026 19515 3 Skin 0.12 protein_coding synonymous_variant LOW 2298T>C Phe766Phe
M0093357 PFCJLHLD_00026 19518 3 Skin 0.12 protein_coding synonymous_variant LOW 2295G>C Ala765Ala
M0093358 PFCJLHLD_00026 19587 4 Skin 0.16 protein_coding synonymous_variant LOW 2226T>C Arg742Arg
M0093359 PFCJLHLD_00026 19638 4 Skin 0.16 protein_coding synonymous_variant LOW 2175A>G Thr725Thr
M0093360 PFCJLHLD_00026 19653 4 Skin 0.16 protein_coding synonymous_variant LOW 2160G>C Ala720Ala
M0093361 PFCJLHLD_00026 19656 4 Skin 0.16 protein_coding synonymous_variant LOW 2157G>C Leu719Leu
M0093362 PFCJLHLD_00026 19662 4 Skin 0.16 protein_coding synonymous_variant LOW 2151C>G Val717Val
M0093363 PFCJLHLD_00026 19665 4 Skin 0.16 protein_coding synonymous_variant LOW 2148C>T Asp716Asp
M0093364 PFCJLHLD_00026 19719 4 Skin 0.16 protein_coding synonymous_variant LOW 2094G>A Lys698Lys
M0093365 PFCJLHLD_00026 19926 4 Skin 0.16 protein_coding synonymous_variant LOW 1887C>T Ile629Ile
M0093366 PFCJLHLD_00026 20030 4 Skin 0.16 protein_coding missense_variant MODERATE 1783C>G Leu595Val
M0093367 PFCJLHLD_00026 20035 4 Skin 0.16 protein_coding missense_variant MODERATE 1778G>A Arg593His
M0093368 PFCJLHLD_00026 20076 4 Skin 0.16 protein_coding synonymous_variant LOW 1737G>C Val579Val
M0093369 PFCJLHLD_00026 20091 4 Skin 0.16 protein_coding synonymous_variant LOW 1722C>G Gly574Gly
M0093370 PFCJLHLD_00026 20094 4 Skin 0.16 protein_coding synonymous_variant LOW 1719T>C Tyr573Tyr
M0093371 PFCJLHLD_00026 20112 4 Skin 0.16 protein_coding synonymous_variant LOW 1701C>T Phe567Phe
M0093372 PFCJLHLD_00026 20139 4 Skin 0.16 protein_coding synonymous_variant LOW 1674T>C Gly558Gly
M0093373 PFCJLHLD_00026 20202 4 Skin 0.16 protein_coding synonymous_variant LOW 1611G>A Ala537Ala
M0093374 PFCJLHLD_00026 20228 4 Skin 0.16 protein_coding missense_variant MODERATE 1585G>A Ala529Thr
M0093375 PFCJLHLD_00026 20229 4 Skin 0.16 protein_coding synonymous_variant LOW 1584T>C Arg528Arg
M0093376 PFCJLHLD_00026 20233 4 Skin 0.16 protein_coding missense_variant MODERATE 1580A>G Gln527Arg
M0093377 PFCJLHLD_00026 20234 4 Skin 0.16 protein_coding missense_variant MODERATE 1579C>G Gln527Glu
M0093378 PFCJLHLD_00026 20307 4 Skin 0.16 protein_coding synonymous_variant LOW 1506T>C Val502Val
M0093379 PFCJLHLD_00026 20313 4 Skin 0.16 protein_coding synonymous_variant LOW 1500T>C Asn500Asn
M0093380 PFCJLHLD_00026 20331 4 Skin 0.16 protein_coding synonymous_variant LOW 1482G>A Glu494Glu
M0093381 PFCJLHLD_00026 20415 4 Skin 0.16 protein_coding synonymous_variant LOW 1398G>T Gly466Gly
M0093382 PFCJLHLD_00026 20448 4 Skin 0.16 protein_coding synonymous_variant LOW 1365G>C Ala455Ala
M0093383 PFCJLHLD_00026 20451 4 Skin 0.16 protein_coding synonymous_variant LOW 1362C>G Val454Val
M0093384 PFCJLHLD_00026 20466 4 Skin 0.16 protein_coding synonymous_variant LOW 1347C>G Ala449Ala
M0093385 PFCJLHLD_00026 20472 4 Skin 0.16 protein_coding synonymous_variant LOW 1341C>A Ser447Ser
M0093386 PFCJLHLD_00026 20475 4 Skin 0.16 protein_coding synonymous_variant LOW 1338T>C Leu446Leu
M0093387 PFCJLHLD_00026 20485 4 Skin 0.16 protein_coding missense_variant MODERATE 1328G>C Ser443Thr
M0093388 PFCJLHLD_00026 20493 4 Skin 0.16 protein_coding synonymous_variant LOW 1320G>C Val440Val
M0093389 PFCJLHLD_00026 20514 4 Skin 0.16 protein_coding synonymous_variant LOW 1299C>G Thr433Thr
M0093390 PFCJLHLD_00026 20526 4 Skin 0.16 protein_coding synonymous_variant LOW 1287T>C Ile429Ile
M0093391 PFCJLHLD_00026 20550 4 Skin 0.16 protein_coding synonymous_variant LOW 1263C>T Val421Val
M0093392 PFCJLHLD_00026 20616 4 Skin 0.16 protein_coding synonymous_variant LOW 1197G>A Lys399Lys
M0093393 PFCJLHLD_00026 20688 4 Skin 0.16 protein_coding synonymous_variant LOW 1125C>T Ile375Ile
M0093394 PFCJLHLD_00026 20718 4 Skin 0.16 protein_coding synonymous_variant LOW 1095A>G Gln365Gln
M0093395 PFCJLHLD_00026 20726 4 Skin 0.16 protein_coding missense_variant MODERATE 1087G>T Ala363Ser
M0093396 PFCJLHLD_00026 20748 4 Skin 0.16 protein_coding synonymous_variant LOW 1065T>C Ile355Ile
M0093397 PFCJLHLD_00026 20763 4 Skin 0.16 protein_coding synonymous_variant LOW 1050G>C Val350Val
M0093398 PFCJLHLD_00026 20781 4 Skin 0.16 protein_coding synonymous_variant LOW 1032C>T Thr344Thr
M0093399 PFCJLHLD_00026 20782 4 Skin 0.16 protein_coding missense_variant MODERATE 1031C>T Thr344Ile
M0093400 PFCJLHLD_00026 20853 4 Skin 0.16 protein_coding synonymous_variant LOW 960C>T Thr320Thr
M0093401 PFCJLHLD_00026 20859 4 Skin 0.16 protein_coding synonymous_variant LOW 954A>G Val318Val
M0093402 PFCJLHLD_00026 20861 4 Skin 0.16 protein_coding missense_variant MODERATE 952G>A Val318Ile
M0093403 PFCJLHLD_00026 20874 4 Skin 0.16 protein_coding synonymous_variant LOW 939T>G Gly313Gly
M0093404 PFCJLHLD_00026 20880 4 Skin 0.16 protein_coding synonymous_variant LOW 933T>C Arg311Arg
M0093405 PFCJLHLD_00026 20889 4 Skin 0.16 protein_coding synonymous_variant LOW 924C>G Arg308Arg
M0093406 PFCJLHLD_00026 20892 4 Skin 0.16 protein_coding synonymous_variant LOW 921C>G Ala307Ala
M0093407 PFCJLHLD_00026 20907 4 Skin 0.16 protein_coding missense_variant MODERATE 906G>C Leu302Phe
M0093408 PFCJLHLD_00026 20909 4 Skin 0.16 protein_coding synonymous_variant LOW 904T>C Leu302Leu
M0093409 PFCJLHLD_00026 20943 4 Skin 0.16 protein_coding synonymous_variant LOW 870A>G Gly290Gly
M0093410 PFCJLHLD_00026 20952 4 Skin 0.16 protein_coding synonymous_variant LOW 861C>T Ile287Ile
M0093411 PFCJLHLD_00026 20954 4 Skin 0.16 protein_coding missense_variant MODERATE 859A>C Ile287Leu
M0093412 PFCJLHLD_00026 21024 4 Skin 0.16 protein_coding synonymous_variant LOW 789G>C Thr263Thr
M0093413 PFCJLHLD_00026 21039 4 Skin 0.16 protein_coding synonymous_variant LOW 774C>T Ile258Ile
M0093414 PFCJLHLD_00026 21042 4 Skin 0.16 protein_coding synonymous_variant LOW 771G>A Gln257Gln
M0093415 PFCJLHLD_00026 21053 4 Skin 0.16 protein_coding synonymous_variant LOW 760C>T Leu254Leu
M0093416 PFCJLHLD_00026 21061 4 Skin 0.16 protein_coding missense_variant MODERATE 752T>C Val251Ala
M0093417 PFCJLHLD_00026 21075 4 Skin 0.16 protein_coding synonymous_variant LOW 738C>T Phe246Phe
M0093418 PFCJLHLD_00026 21093 4 Skin 0.16 protein_coding synonymous_variant LOW 720C>T Ile240Ile
M0093419 PFCJLHLD_00026 21102 4 Skin 0.16 protein_coding synonymous_variant LOW 711C>T Leu237Leu
M0093420 PFCJLHLD_00026 21105 4 Skin 0.16 protein_coding synonymous_variant LOW 708T>G Ser236Ser
M0093421 PFCJLHLD_00026 21123 4 Skin 0.16 protein_coding synonymous_variant LOW 690T>C Arg230Arg
M0093422 PFCJLHLD_00026 21126 4 Skin 0.16 protein_coding synonymous_variant LOW 687C>T Asn229Asn
M0093423 PFCJLHLD_00026 21129 4 Skin 0.16 protein_coding missense_variant MODERATE 684A>C Lys228Asn
M0093424 PFCJLHLD_00026 21164 4 Skin 0.16 protein_coding synonymous_variant LOW 649T>C Leu217Leu
M0093425 PFCJLHLD_00026 21180 4 Skin 0.16 protein_coding synonymous_variant LOW 633G>A Val211Val
M0093426 PFCJLHLD_00026 21219 4 Skin 0.16 protein_coding synonymous_variant LOW 594C>G Arg198Arg
M0093427 PFCJLHLD_00026 21293 4 Skin 0.16 protein_coding synonymous_variant LOW 520C>T Leu174Leu
M0093428 PFCJLHLD_00026 21294 4 Skin 0.16 protein_coding synonymous_variant LOW 519G>A Pro173Pro
M0093429 PFCJLHLD_00026 21336 4 Skin 0.16 protein_coding synonymous_variant LOW 477T>C Ser159Ser
M0093430 PFCJLHLD_00026 21345 4 Skin 0.16 protein_coding synonymous_variant LOW 468G>A Glu156Glu
M0093431 PFCJLHLD_00026 21348 4 Skin 0.16 protein_coding missense_variant MODERATE 465G>C Gln155His
M0093432 PFCJLHLD_00026 21673 4 Skin 0.16 protein_coding missense_variant MODERATE 140A>T Tyr47Phe
M0093433 PFCJLHLD_00026 21687 4 Skin 0.16 protein_coding synonymous_variant LOW 126T>C Arg42Arg
M0093434 PFCJLHLD_00026 21720 4 Skin 0.16 protein_coding synonymous_variant LOW 93G>C Val31Val
M0093435 PFCJLHLD_00026 21808 4 Skin 0.16 protein_coding missense_variant MODERATE 5A>G Lys2Arg
M0093436 PFCJLHLD_00028 22441 3 Skin 0.12 protein_coding synonymous_variant LOW 207G>C Thr69Thr
M0093437 PFCJLHLD_00003 3899 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2391G>A None
M0093438 PFCJLHLD_00003 3928 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2420A>C None
M0093439 PFCJLHLD_00003 3950 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2442G>A None
M0093440 PFCJLHLD_00008 3986 3 Skin 0.12 protein_coding synonymous_variant LOW 1350C>T Arg450Arg
M0093441 PFCJLHLD_00008 4019 3 Skin 0.12 protein_coding synonymous_variant LOW 1317T>C Leu439Leu
M0093442 PFCJLHLD_00008 4079 3 Skin 0.12 protein_coding synonymous_variant LOW 1257C>T Tyr419Tyr
M0093443 PFCJLHLD_00008 4145 3 Skin 0.12 protein_coding synonymous_variant LOW 1191T>G Gly397Gly
M0093444 PFCJLHLD_00008 4271 3 Skin 0.12 protein_coding synonymous_variant LOW 1065T>C Val355Val
M0093445 PFCJLHLD_00008 4280 3 Skin 0.12 protein_coding synonymous_variant LOW 1056C>T Leu352Leu
M0093446 PFCJLHLD_00008 4328 3 Skin 0.12 protein_coding synonymous_variant LOW 1008G>C Ala336Ala
M0093447 PFCJLHLD_00008 4355 3 Skin 0.12 protein_coding synonymous_variant LOW 981G>A Gln327Gln
M0093448 PFCJLHLD_00008 4429 3 Skin 0.12 protein_coding missense_variant MODERATE 907A>C Met303Leu
M0093449 PFCJLHLD_00008 4505 3 Skin 0.12 protein_coding synonymous_variant LOW 831A>G Pro277Pro
M0093450 PFCJLHLD_00008 4526 3 Skin 0.12 protein_coding synonymous_variant LOW 810A>G Gln270Gln
M0093451 PFCJLHLD_00008 4589 3 Skin 0.12 protein_coding synonymous_variant LOW 747C>T Arg249Arg
M0093452 PFCJLHLD_00295 302817 5 Skin 0.20 protein_coding synonymous_variant LOW 1539C>T Asp513Asp
M0093453 PFCJLHLD_00295 302862 5 Skin 0.20 protein_coding synonymous_variant LOW 1584T>C Pro528Pro
M0093454 PFCJLHLD_00295 302866 5 Skin 0.20 protein_coding synonymous_variant LOW 1588T>C Leu530Leu
M0093455 PFCJLHLD_00295 302871 5 Skin 0.20 protein_coding synonymous_variant LOW 1593C>T Thr531Thr
M0093456 PFCJLHLD_00295 302874 5 Skin 0.20 protein_coding synonymous_variant LOW 1596C>T Asp532Asp
M0093457 PFCJLHLD_00295 302881 5 Skin 0.20 protein_coding missense_variant MODERATE 1603C>T Pro535Ser
M0093458 PFCJLHLD_00295 302883 5 Skin 0.20 protein_coding synonymous_variant LOW 1605C>T Pro535Pro
M0093459 PFCJLHLD_00295 302885 5 Skin 0.20 protein_coding missense_variant MODERATE 1607C>T Ala536Val
M0093460 PFCJLHLD_00295 302888 5 Skin 0.20 protein_coding missense_variant MODERATE 1610G>C Arg537Pro
M0093461 PFCJLHLD_00295 302889 5 Skin 0.20 protein_coding synonymous_variant LOW 1611T>A Arg537Arg
M0093462 PFCJLHLD_00295 303153 5 Skin 0.20 protein_coding synonymous_variant LOW 1875C>T Asp625Asp
M0093463 PFCJLHLD_00295 303156 5 Skin 0.20 protein_coding synonymous_variant LOW 1878C>A Gly626Gly
M0093464 PFCJLHLD_00295 303162 5 Skin 0.20 protein_coding synonymous_variant LOW 1884C>T Thr628Thr
M0093465 PFCJLHLD_00295 303165 5 Skin 0.20 protein_coding synonymous_variant LOW 1887G>A Ala629Ala
M0093466 PFCJLHLD_00295 303177 5 Skin 0.20 protein_coding synonymous_variant LOW 1899T>C Ala633Ala
M0093467 PFCJLHLD_00295 303180 5 Skin 0.20 protein_coding synonymous_variant LOW 1902G>C Ala634Ala
M0093468 PFCJLHLD_00295 303216 5 Skin 0.20 protein_coding synonymous_variant LOW 1938T>C Asp646Asp
M0093469 PFCJLHLD_00295 303750 5 Skin 0.20 protein_coding synonymous_variant LOW 2472G>C Leu824Leu
M0093470 PFCJLHLD_00296 303971 4 Skin 0.16 protein_coding missense_variant MODERATE 931G>A Ala311Thr
M0093471 PFCJLHLD_00295 303190 3 Skin 0.12 protein_coding missense_variant MODERATE 1912G>A Ala638Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PFCJLHLD_00018 AXH00813.1|CBM50 97.3 1.72e-151 1 256 1 1
PFCJLHLD_00123 UBV44224.1|GH43_32 82.4 1.66e-204 9 321 0.966 0.9601
PFCJLHLD_00128 UBV44220.1|GH43_30 78.4 1.73e-198 13 350 0.9657 0.9736
PFCJLHLD_00134 QBY08217.1|GH36 78.4 1.57e-293 9 494 0.9759 0.9838
PFCJLHLD_00241 ADY27693.1|GT4 73.4 7.89e-179 6 373 0.8762 0.9813
PFCJLHLD_00242 ADY27692.1|GT4 70.2 8.82e-178 1 386 0.9872 0.9747
PFCJLHLD_00275 BDP43567.1|GT4 79.2 8.88e-220 10 394 0.9772 0.977
PFCJLHLD_00289 BDP44721.1|CBM50 75.8 7.04e-181 16 363 0.9587 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term