Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C550
  Reference Plasmid   NZ_CP029986.1
  Reference Plasmid Size   265221
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0093571 HEHFCBBD_00124 113471 4 Skin 0.06 protein_coding synonymous_variant LOW 999C>T Thr333Thr
M0093572 HEHFCBBD_00124 113483 8 Skin 0.11 protein_coding synonymous_variant LOW 1011T>C Ile337Ile
M0093573 HEHFCBBD_00124 113560 6 Skin 0.09 protein_coding missense_variant MODERATE 1088A>G Asp363Gly
M0093574 HEHFCBBD_00124 113588 3 Skin 0.04 protein_coding synonymous_variant LOW 1116C>T Ile372Ile
M0093575 HEHFCBBD_00124 113645 6 Skin 0.09 protein_coding synonymous_variant LOW 1173C>T Gly391Gly
M0093576 HEHFCBBD_00124 113663 5 Skin 0.07 protein_coding synonymous_variant LOW 1191C>T Gly397Gly
M0093577 HEHFCBBD_00124 113669 7 Skin 0.10 protein_coding synonymous_variant LOW 1197A>G Glu399Glu
M0093578 HEHFCBBD_00124 113671 9 Skin 0.13 protein_coding missense_variant MODERATE 1199A>G Lys400Arg
M0093579 HEHFCBBD_00124 113672 5 Skin 0.07 protein_coding synonymous_variant LOW 1200G>A Lys400Lys
M0093580 HEHFCBBD_00124 113675 4 Skin 0.06 protein_coding synonymous_variant LOW 1203C>T Asp401Asp
M0093581 HEHFCBBD_00124 113687 4 Skin 0.06 protein_coding synonymous_variant LOW 1215G>A Ala405Ala
M0093582 HEHFCBBD_00124 113702 4 Skin 0.06 protein_coding synonymous_variant LOW 1230C>G Pro410Pro
M0093583 HEHFCBBD_00124 113723 4 Skin 0.06 protein_coding missense_variant MODERATE 1251G>T Gln417His
M0093584 HEHFCBBD_00124 113737 9 Skin 0.13 protein_coding missense_variant MODERATE 1265A>C Lys422Thr
M0093585 HEHFCBBD_00124 113839 7 Skin 0.10 protein_coding missense_variant MODERATE 1367A>G His456Arg
M0093586 HEHFCBBD_00125 113844 7 Skin 0.10 protein_coding missense_variant MODERATE 21T>A Asp7Glu
M0093587 HEHFCBBD_00125 113851 7 Skin 0.10 protein_coding missense_variant MODERATE 28A>G Ser10Gly
M0093588 HEHFCBBD_00125 113888 3 Skin 0.04 protein_coding missense_variant MODERATE 65G>T Arg22Leu
M0093589 HEHFCBBD_00125 113991 8 Skin 0.11 protein_coding synonymous_variant LOW 168G>C Arg56Arg
M0093590 HEHFCBBD_00125 113992 8 Skin 0.11 protein_coding missense_variant MODERATE 169A>G Thr57Ala
M0093591 HEHFCBBD_00125 114033 8 Skin 0.11 protein_coding synonymous_variant LOW 210T>C Ile70Ile
M0093592 HEHFCBBD_00125 114036 8 Skin 0.11 protein_coding synonymous_variant LOW 213T>C Val71Val
M0093593 HEHFCBBD_00125 114111 8 Skin 0.11 protein_coding synonymous_variant LOW 288A>G Lys96Lys
M0093594 HEHFCBBD_00126 114653 4 Skin 0.06 protein_coding missense_variant MODERATE 201A>T Gln67His
M0093595 HEHFCBBD_00126 114933 5 Skin 0.07 protein_coding missense_variant MODERATE 481A>G Asn161Asp
M0093596 HEHFCBBD_00127 115169 4 Skin 0.06 protein_coding synonymous_variant LOW 201T>C Cys67Cys
M0093597 HEHFCBBD_00127 115173 4 Skin 0.06 protein_coding missense_variant MODERATE 197T>C Ile66Thr
M0093598 HEHFCBBD_00122 111227 12 Skin 0.17 protein_coding synonymous_variant LOW 561G>A Glu187Glu
M0093599 HEHFCBBD_00122 111272 14 Skin 0.20 protein_coding synonymous_variant LOW 606C>T His202His
M0093600 HEHFCBBD_00122 111317 10 Skin 0.14 protein_coding synonymous_variant LOW 651G>T Ala217Ala
M0093601 HEHFCBBD_00122 111377 15 Skin 0.21 protein_coding missense_variant MODERATE 711A>T Glu237Asp
M0093602 HEHFCBBD_00122 111399 14 Skin 0.20 protein_coding missense_variant MODERATE 733C>A Leu245Met
M0093603 HEHFCBBD_00122 111466 15 Skin 0.21 protein_coding missense_variant MODERATE 800T>C Val267Ala
M0093604 HEHFCBBD_00122 111533 14 Skin 0.20 protein_coding synonymous_variant LOW 867A>G Ala289Ala
M0093605 HEHFCBBD_00122 111549 14 Skin 0.20 protein_coding missense_variant MODERATE 883C>G Pro295Ala
M0093606 HEHFCBBD_00122 111566 14 Skin 0.20 protein_coding synonymous_variant LOW 900G>C Ala300Ala
M0093607 HEHFCBBD_00122 111578 14 Skin 0.20 protein_coding synonymous_variant LOW 912A>G Gln304Gln
M0093608 HEHFCBBD_00122 111594 14 Skin 0.20 protein_coding missense_variant MODERATE 928A>G Ile310Val
M0093609 HEHFCBBD_00122 111602 14 Skin 0.20 protein_coding synonymous_variant LOW 936C>T Ser312Ser
M0093610 HEHFCBBD_00122 111632 12 Skin 0.17 protein_coding synonymous_variant LOW 966T>C His322His
M0093611 HEHFCBBD_00122 111638 12 Skin 0.17 protein_coding synonymous_variant LOW 972G>A Pro324Pro
M0093612 HEHFCBBD_00122 111641 14 Skin 0.20 protein_coding synonymous_variant LOW 975T>C Leu325Leu
M0093613 HEHFCBBD_00122 111683 14 Skin 0.20 protein_coding synonymous_variant LOW 1017G>C Ser339Ser
M0093614 HEHFCBBD_00122 111714 14 Skin 0.20 protein_coding missense_variant MODERATE 1048G>C Ala350Pro
M0093615 HEHFCBBD_00122 111733 16 Skin 0.23 protein_coding missense_variant MODERATE 1067A>G Gln356Arg
M0093616 HEHFCBBD_00122 111737 16 Skin 0.23 protein_coding synonymous_variant LOW 1071T>C Leu357Leu
M0093617 HEHFCBBD_00122 111752 13 Skin 0.19 protein_coding synonymous_variant LOW 1086C>T Asp362Asp
M0093618 HEHFCBBD_00123 111816 13 Skin 0.19 protein_coding missense_variant MODERATE 44C>A Thr15Lys
M0093619 HEHFCBBD_00123 111991 15 Skin 0.21 protein_coding synonymous_variant LOW 219T>G Ala73Ala
M0093620 HEHFCBBD_00123 112044 15 Skin 0.21 protein_coding missense_variant MODERATE 272A>C Asp91Ala
M0093621 HEHFCBBD_00123 112109 15 Skin 0.21 protein_coding missense_variant MODERATE 337A>G Asn113Asp
M0093622 HEHFCBBD_00123 112183 14 Skin 0.20 protein_coding synonymous_variant LOW 411A>G Lys137Lys
M0093623 HEHFCBBD_00123 112186 14 Skin 0.20 protein_coding synonymous_variant LOW 414T>C Ile138Ile
M0093624 HEHFCBBD_00123 112291 13 Skin 0.19 protein_coding synonymous_variant LOW 519T>C Gly173Gly
M0093625 HEHFCBBD_00123 112300 13 Skin 0.19 protein_coding synonymous_variant LOW 528C>T Val176Val
M0093626 HEHFCBBD_00123 112336 4 Skin 0.06 protein_coding synonymous_variant LOW 564C>T Arg188Arg
M0093627 HEHFCBBD_00123 112342 13 Skin 0.19 protein_coding synonymous_variant LOW 570A>G Gln190Gln
M0093628 HEHFCBBD_00123 112392 8 Skin 0.11 protein_coding missense_variant MODERATE 620C>T Thr207Met
M0093629 HEHFCBBD_00123 112395 8 Skin 0.11 protein_coding missense_variant MODERATE 623C>G Ala208Gly
M0093630 HEHFCBBD_00123 112396 8 Skin 0.11 protein_coding synonymous_variant LOW 624G>C Ala208Ala
M0093631 HEHFCBBD_00123 112402 8 Skin 0.11 protein_coding synonymous_variant LOW 630T>C Asp210Asp
M0093632 HEHFCBBD_00124 112488 7 Skin 0.10 protein_coding missense_variant MODERATE 16G>A Asp6Asn
M0093633 HEHFCBBD_00124 112495 7 Skin 0.10 protein_coding missense_variant MODERATE 23G>A Arg8Lys
M0093634 HEHFCBBD_00124 112772 5 Skin 0.07 protein_coding synonymous_variant LOW 300A>G Pro100Pro
M0093635 HEHFCBBD_00124 112790 5 Skin 0.07 protein_coding synonymous_variant LOW 318G>C Ala106Ala
M0093636 HEHFCBBD_00124 112903 6 Skin 0.09 protein_coding missense_variant MODERATE 431C>A Ala144Asp
M0093637 HEHFCBBD_00124 112910 4 Skin 0.06 protein_coding synonymous_variant LOW 438G>T Leu146Leu
M0093638 HEHFCBBD_00124 112928 4 Skin 0.06 protein_coding synonymous_variant LOW 456C>T Val152Val
M0093639 HEHFCBBD_00124 112939 12 Skin 0.17 protein_coding missense_variant MODERATE 467G>A Gly156Glu
M0093640 HEHFCBBD_00124 113118 11 Skin 0.16 protein_coding missense_variant MODERATE 646G>A Asp216Asn
M0093641 HEHFCBBD_00124 113168 5 Skin 0.07 protein_coding synonymous_variant LOW 696C>T Gly232Gly
M0093642 HEHFCBBD_00124 113378 6 Skin 0.09 protein_coding synonymous_variant LOW 906C>T Phe302Phe
M0093643 HEHFCBBD_00124 113237 9 Skin 0.13 protein_coding synonymous_variant LOW 765C>T Arg255Arg
M0093644 HEHFCBBD_00124 113240 9 Skin 0.13 protein_coding synonymous_variant LOW 768A>C Ala256Ala
M0093645 HEHFCBBD_00124 113249 8 Skin 0.11 protein_coding synonymous_variant LOW 777C>T Asp259Asp
M0093646 HEHFCBBD_00124 113267 7 Skin 0.10 protein_coding synonymous_variant LOW 795G>A Glu265Glu
M0093647 HEHFCBBD_00124 113332 7 Skin 0.10 protein_coding missense_variant MODERATE 860A>G His287Arg
M0093648 HEHFCBBD_00124 113375 6 Skin 0.09 protein_coding synonymous_variant LOW 903C>T Asp301Asp
M0093649 HEHFCBBD_00124 113492 4 Skin 0.06 protein_coding synonymous_variant LOW 1020C>T Ile340Ile
M0093650 HEHFCBBD_00124 113558 4 Skin 0.06 protein_coding missense_variant MODERATE 1086A>T Lys362Asn
M0093651 HEHFCBBD_00125 113859 3 Skin 0.04 protein_coding synonymous_variant LOW 36T>C Pro12Pro
M0093652 HEHFCBBD_00125 113861 3 Skin 0.04 protein_coding missense_variant MODERATE 38A>G Glu13Gly
M0093653 HEHFCBBD_00125 114187 3 Skin 0.04 protein_coding synonymous_variant LOW 364T>C Leu122Leu
M0093654 HEHFCBBD_00115 109732 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4824C>G None
M0093655 HEHFCBBD_00115 109742 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4834G>A None
M0093656 HEHFCBBD_00115 109750 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4842G>A None
M0093657 HEHFCBBD_00115 109756 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4848T>C None
M0093658 HEHFCBBD_00115 109757 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4849T>C None
M0093659 HEHFCBBD_00115 109780 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4872G>A None
M0093660 HEHFCBBD_00115 109786 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4878C>G None
M0093661 HEHFCBBD_00121 109807 9 Skin 0.13 protein_coding synonymous_variant LOW 15A>G Gln5Gln
M0093662 HEHFCBBD_00121 109910 8 Skin 0.11 protein_coding missense_variant MODERATE 118G>A Ala40Thr
M0093663 HEHFCBBD_00121 109918 8 Skin 0.11 protein_coding synonymous_variant LOW 126G>A Val42Val
M0093664 HEHFCBBD_00121 109924 9 Skin 0.13 protein_coding synonymous_variant LOW 132T>C Ile44Ile
M0093665 HEHFCBBD_00121 109927 9 Skin 0.13 protein_coding synonymous_variant LOW 135A>G Leu45Leu
M0093666 HEHFCBBD_00121 109930 9 Skin 0.13 protein_coding synonymous_variant LOW 138C>A Gly46Gly
M0093667 HEHFCBBD_00121 109933 8 Skin 0.11 protein_coding synonymous_variant LOW 141T>C Cys47Cys
M0093668 HEHFCBBD_00121 109969 9 Skin 0.13 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0093669 HEHFCBBD_00121 109978 9 Skin 0.13 protein_coding synonymous_variant LOW 186T>C Val62Val
M0093670 HEHFCBBD_00121 109985 9 Skin 0.13 protein_coding missense_variant MODERATE 193A>G Asn65Asp
M0093671 HEHFCBBD_00121 109990 9 Skin 0.13 protein_coding synonymous_variant LOW 198C>T Ile66Ile
M0093672 HEHFCBBD_00121 109991 9 Skin 0.13 protein_coding missense_variant MODERATE 199G>A Ala67Thr
M0093673 HEHFCBBD_00121 110020 9 Skin 0.13 protein_coding synonymous_variant LOW 228T>C Phe76Phe
M0093674 HEHFCBBD_00121 110041 9 Skin 0.13 protein_coding synonymous_variant LOW 249G>A Leu83Leu
M0093675 HEHFCBBD_00121 110051 9 Skin 0.13 protein_coding missense_variant MODERATE 259G>A Val87Ile
M0093676 HEHFCBBD_00121 110069 9 Skin 0.13 protein_coding missense_variant MODERATE 277C>T Arg93Cys
M0093677 HEHFCBBD_00121 110071 9 Skin 0.13 protein_coding synonymous_variant LOW 279T>C Arg93Arg
M0093678 HEHFCBBD_00121 110077 9 Skin 0.13 protein_coding synonymous_variant LOW 285A>G Glu95Glu
M0093679 HEHFCBBD_00121 110098 10 Skin 0.14 protein_coding synonymous_variant LOW 306G>A Ala102Ala
M0093680 HEHFCBBD_00121 110137 9 Skin 0.13 protein_coding synonymous_variant LOW 345A>C Ala115Ala
M0093681 HEHFCBBD_00121 110164 11 Skin 0.16 protein_coding missense_variant MODERATE 372G>C Leu124Phe
M0093682 HEHFCBBD_00116 110547 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4617T>C None
M0093683 HEHFCBBD_00116 110548 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4618C>T None
M0093684 HEHFCBBD_00122 110735 5 Skin 0.07 protein_coding synonymous_variant LOW 69C>G Ala23Ala
M0093685 HEHFCBBD_00122 110762 8 Skin 0.11 protein_coding synonymous_variant LOW 96C>G Gly32Gly
M0093686 HEHFCBBD_00122 110789 7 Skin 0.10 protein_coding synonymous_variant LOW 123T>C Arg41Arg
M0093687 HEHFCBBD_00122 110792 7 Skin 0.10 protein_coding synonymous_variant LOW 126C>T His42His
M0093688 HEHFCBBD_00122 110819 8 Skin 0.11 protein_coding synonymous_variant LOW 153A>C Ser51Ser
M0093689 HEHFCBBD_00122 110825 7 Skin 0.10 protein_coding synonymous_variant LOW 159C>T Ala53Ala
M0093690 HEHFCBBD_00122 110833 7 Skin 0.10 protein_coding missense_variant MODERATE 167A>G Lys56Arg
M0093691 HEHFCBBD_00122 110840 10 Skin 0.14 protein_coding synonymous_variant LOW 174A>G Thr58Thr
M0093692 HEHFCBBD_00122 110882 10 Skin 0.14 protein_coding synonymous_variant LOW 216T>C Gly72Gly
M0093693 HEHFCBBD_00122 110890 8 Skin 0.11 protein_coding missense_variant MODERATE 224T>G Val75Gly
M0093694 HEHFCBBD_00122 110891 8 Skin 0.11 protein_coding synonymous_variant LOW 225G>A Val75Val
M0093695 HEHFCBBD_00122 110893 9 Skin 0.13 protein_coding missense_variant MODERATE 227G>A Arg76His
M0093696 HEHFCBBD_00122 110898 9 Skin 0.13 protein_coding missense_variant MODERATE 232G>T Ala78Ser
M0093697 HEHFCBBD_00122 110899 9 Skin 0.13 protein_coding missense_variant MODERATE 233C>G Ala78Gly
M0093698 HEHFCBBD_00122 110903 9 Skin 0.13 protein_coding synonymous_variant LOW 237G>C Thr79Thr
M0093699 HEHFCBBD_00122 110906 8 Skin 0.11 protein_coding synonymous_variant LOW 240T>C Tyr80Tyr
M0093700 HEHFCBBD_00122 110909 9 Skin 0.13 protein_coding synonymous_variant LOW 243T>C Gly81Gly
M0093701 HEHFCBBD_00122 110933 10 Skin 0.14 protein_coding synonymous_variant LOW 267A>G Ala89Ala
M0093702 HEHFCBBD_00122 110975 7 Skin 0.10 protein_coding synonymous_variant LOW 309C>A Gly103Gly
M0093703 HEHFCBBD_00122 110990 8 Skin 0.11 protein_coding synonymous_variant LOW 324G>A Val108Val
M0093704 HEHFCBBD_00122 110991 6 Skin 0.09 protein_coding missense_variant MODERATE 325A>G Ile109Val
M0093705 HEHFCBBD_00122 111116 9 Skin 0.13 protein_coding synonymous_variant LOW 450C>T Leu150Leu
M0093706 HEHFCBBD_00122 111161 7 Skin 0.10 protein_coding synonymous_variant LOW 495G>A Ala165Ala
M0093707 HEHFCBBD_00122 111449 15 Skin 0.21 protein_coding synonymous_variant LOW 783A>G Gln261Gln
M0093708 HEHFCBBD_00123 111793 13 Skin 0.19 protein_coding synonymous_variant LOW 21T>C Asp7Asp
M0093709 HEHFCBBD_00123 111926 8 Skin 0.11 protein_coding missense_variant MODERATE 154A>G Ser52Gly
M0093710 HEHFCBBD_00123 111931 13 Skin 0.19 protein_coding synonymous_variant LOW 159A>C Ala53Ala
M0093711 HEHFCBBD_00123 111933 3 Skin 0.04 protein_coding missense_variant MODERATE 161G>A Arg54Gln
M0093712 HEHFCBBD_00123 111940 8 Skin 0.11 protein_coding synonymous_variant LOW 168C>G Ala56Ala
M0093713 HEHFCBBD_00123 112060 13 Skin 0.19 protein_coding synonymous_variant LOW 288T>G Gly96Gly
M0093714 HEHFCBBD_00123 112099 13 Skin 0.19 protein_coding synonymous_variant LOW 327G>C Val109Val
M0093715 HEHFCBBD_00124 112626 6 Skin 0.09 protein_coding missense_variant MODERATE 154G>A Asp52Asn
M0093716 HEHFCBBD_00124 112628 6 Skin 0.09 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0093717 HEHFCBBD_00124 112631 10 Skin 0.14 protein_coding synonymous_variant LOW 159G>C Leu53Leu
M0093718 HEHFCBBD_00118 107472 10 Skin 0.14 protein_coding missense_variant MODERATE 577T>A Ser193Thr
M0093719 HEHFCBBD_00118 107817 10 Skin 0.14 protein_coding missense_variant MODERATE 232T>G Phe78Val
M0093720 HEHFCBBD_00118 108028 10 Skin 0.14 protein_coding synonymous_variant LOW 21C>T Arg7Arg
M0093721 HEHFCBBD_00118 108038 8 Skin 0.11 protein_coding missense_variant MODERATE 11C>A Ala4Glu
M0093722 HEHFCBBD_00114 108079 8 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4337A>G None
M0093723 HEHFCBBD_00119 108202 7 Skin 0.10 protein_coding missense_variant MODERATE 94C>G Arg32Gly
M0093724 HEHFCBBD_00119 108223 10 Skin 0.14 protein_coding missense_variant MODERATE 115G>A Val39Ile
M0093725 HEHFCBBD_00111 100468 4 Skin 0.06 protein_coding synonymous_variant LOW 432G>T Leu144Leu
M0093726 HEHFCBBD_00111 100503 6 Skin 0.09 protein_coding missense_variant MODERATE 397A>G Asn133Asp
M0093727 HEHFCBBD_00121 110240 4 Skin 0.06 protein_coding missense_variant MODERATE 448C>A Arg150Ser
M0093728 HEHFCBBD_00121 110246 4 Skin 0.06 protein_coding missense_variant MODERATE 454A>G Ser152Gly
M0093729 HEHFCBBD_00116 110571 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4641A>G None
M0093730 HEHFCBBD_00113 101856 3 Skin 0.04 protein_coding synonymous_variant LOW 348A>G Val116Val
M0093731 HEHFCBBD_00113 101886 3 Skin 0.04 protein_coding synonymous_variant LOW 318G>C Ala106Ala
M0093732 HEHFCBBD_00113 101907 3 Skin 0.04 protein_coding synonymous_variant LOW 297T>C Asp99Asp
M0093733 HEHFCBBD_00113 101910 3 Skin 0.04 protein_coding synonymous_variant LOW 294T>C Tyr98Tyr
M0093734 HEHFCBBD_00113 102039 6 Skin 0.09 protein_coding synonymous_variant LOW 165G>T Pro55Pro
M0093735 HEHFCBBD_00113 102099 6 Skin 0.09 protein_coding synonymous_variant LOW 105C>T Arg35Arg
M0093736 HEHFCBBD_00113 102156 6 Skin 0.09 protein_coding synonymous_variant LOW 48G>T Ser16Ser
M0093737 HEHFCBBD_00107 102237 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3774T>C None
M0093738 HEHFCBBD_00107 102250 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3787T>G None
M0093739 HEHFCBBD_00107 102266 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3803G>A None
M0093740 HEHFCBBD_00107 102300 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3837G>A None
M0093741 HEHFCBBD_00122 111200 3 Skin 0.04 protein_coding missense_variant MODERATE 534G>C Leu178Phe
M0093742 HEHFCBBD_00122 111201 3 Skin 0.04 protein_coding missense_variant MODERATE 535G>A Gly179Arg
M0093743 HEHFCBBD_00122 111212 4 Skin 0.06 protein_coding synonymous_variant LOW 546C>G Pro182Pro
M0093744 HEHFCBBD_00122 111221 4 Skin 0.06 protein_coding synonymous_variant LOW 555G>A Thr185Thr
M0093745 HEHFCBBD_00122 111372 3 Skin 0.04 protein_coding missense_variant MODERATE 706G>A Ala236Thr
M0093746 HEHFCBBD_00122 111560 3 Skin 0.04 protein_coding synonymous_variant LOW 894C>T Ala298Ala
M0093747 HEHFCBBD_00123 112012 4 Skin 0.06 protein_coding synonymous_variant LOW 240A>G Ala80Ala
M0093748 HEHFCBBD_00123 112024 4 Skin 0.06 protein_coding synonymous_variant LOW 252G>A Arg84Arg
M0093749 HEHFCBBD_00123 112138 8 Skin 0.11 protein_coding synonymous_variant LOW 366C>T Ala122Ala
M0093750 HEHFCBBD_00123 112156 5 Skin 0.07 protein_coding synonymous_variant LOW 384T>C Asp128Asp
M0093751 HEHFCBBD_00123 112365 4 Skin 0.06 protein_coding missense_variant MODERATE 593C>T Ala198Val
M0093752 HEHFCBBD_00123 112435 4 Skin 0.06 protein_coding synonymous_variant LOW 663C>A Thr221Thr
M0093753 HEHFCBBD_00124 112806 3 Skin 0.04 protein_coding synonymous_variant LOW 334C>T Leu112Leu
M0093754 HEHFCBBD_00124 112826 4 Skin 0.06 protein_coding synonymous_variant LOW 354T>C Asn118Asn
M0093755 HEHFCBBD_00124 113438 3 Skin 0.04 protein_coding synonymous_variant LOW 966G>C Leu322Leu
M0093756 HEHFCBBD_00122 111730 3 Skin 0.04 protein_coding missense_variant MODERATE 1064A>T Asp355Val
M0093757 HEHFCBBD_00124 112689 3 Skin 0.04 protein_coding missense_variant MODERATE 217T>G Ser73Ala
M0093758 HEHFCBBD_00124 112691 3 Skin 0.04 protein_coding synonymous_variant LOW 219C>T Ser73Ser
M0093759 HEHFCBBD_00124 112886 3 Skin 0.04 protein_coding synonymous_variant LOW 414C>T Ile138Ile
M0093760 HEHFCBBD_00112 101643 4 Skin 0.06 protein_coding missense_variant MODERATE 88T>G Phe30Val
M0093761 HEHFCBBD_00113 101740 5 Skin 0.07 protein_coding missense_variant MODERATE 464T>A Leu155His
M0093762 HEHFCBBD_00116 110509 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4579C>T None
M0093763 HEHFCBBD_00122 110774 3 Skin 0.04 protein_coding synonymous_variant LOW 108T>G Ala36Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
HEHFCBBD_00156 Copper (Cu) 76.9 1e-127 1 308 1.0000 1.0000 prediction
HEHFCBBD_00157 Copper (Cu) 82 2.1e-47 1 122 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HEHFCBBD_00005 AXJ97390.1|GT2 99.7 4.96e-232 1 320 1 0.9581
HEHFCBBD_00241 AXJ97368.1|GT4 100 8.07e-277 1 386 1 1
HEHFCBBD_00244 AXJ97371.1|GT4 100 3.51e-178 1 244 1 0.9104





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term