Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C556
  Reference Plasmid   NZ_CP031079.1
  Reference Plasmid Size   482273
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0093764 PHJEADHI_00396 442872 3 Skin 0.02 protein_coding synonymous_variant LOW 642G>A Gly214Gly
M0093765 PHJEADHI_00396 442911 3 Skin 0.02 protein_coding synonymous_variant LOW 603T>G Val201Val
M0093766 PHJEADHI_00396 442992 3 Skin 0.02 protein_coding synonymous_variant LOW 522T>C His174His
M0093767 PHJEADHI_00397 443915 3 Skin 0.02 protein_coding synonymous_variant LOW 714A>G Gln238Gln
M0093768 PHJEADHI_00236 256044 3 Skin 0.02 protein_coding synonymous_variant LOW 1017G>C Gly339Gly
M0093769 PHJEADHI_00236 256302 3 Skin 0.02 protein_coding synonymous_variant LOW 759G>C Thr253Thr
M0093770 PHJEADHI_00286 317270 3 Skin 0.02 protein_coding missense_variant MODERATE 2498T>G Val833Gly
M0093771 PHJEADHI_00005 5486 3 Skin 0.02 protein_coding synonymous_variant LOW 1296A>G Gly432Gly
M0093772 PHJEADHI_00005 5528 3 Skin 0.02 protein_coding synonymous_variant LOW 1338C>G Ala446Ala
M0093773 PHJEADHI_00246 266084 3 Skin 0.02 protein_coding missense_variant MODERATE 743T>C Ile248Thr
M0093774 PHJEADHI_00292 326561 3 Skin 0.02 protein_coding synonymous_variant LOW 498A>G Ala166Ala
M0093775 PHJEADHI_00309 346245 3 Skin 0.02 protein_coding missense_variant MODERATE 671A>G His224Arg
M0093776 PHJEADHI_00309 346276 3 Skin 0.02 protein_coding missense_variant MODERATE 702A>T Glu234Asp
M0093777 PHJEADHI_00310 346591 3 Skin 0.02 protein_coding synonymous_variant LOW 198A>G Glu66Glu
M0093778 PHJEADHI_00311 346812 3 Skin 0.02 protein_coding missense_variant MODERATE 5274A>C Glu1758Asp
M0093779 PHJEADHI_00311 347343 3 Skin 0.02 protein_coding missense_variant MODERATE 4743G>C Met1581Ile
M0093780 PHJEADHI_00240 261027 3 Skin 0.02 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0093781 PHJEADHI_00242 261826 3 Skin 0.02 protein_coding synonymous_variant LOW 27T>C Asp9Asp
M0093782 PHJEADHI_00242 261925 3 Skin 0.02 protein_coding synonymous_variant LOW 126A>G Thr42Thr
M0093783 PHJEADHI_00242 262261 3 Skin 0.02 protein_coding synonymous_variant LOW 462T>G Val154Val
M0093784 PHJEADHI_00242 262332 3 Skin 0.02 protein_coding missense_variant MODERATE 533A>T Tyr178Phe
M0093785 PHJEADHI_00351 394097 3 Skin 0.02 protein_coding synonymous_variant LOW 138C>T Tyr46Tyr
M0093786 PHJEADHI_00353 395977 3 Skin 0.02 protein_coding missense_variant MODERATE 184A>G Thr62Ala
M0093787 PHJEADHI_00227 242329 3 Skin 0.02 protein_coding synonymous_variant LOW 2958G>C Arg986Arg
M0093788 PHJEADHI_00227 242338 3 Skin 0.02 protein_coding synonymous_variant LOW 2949T>C Arg983Arg
M0093789 PHJEADHI_00227 243535 3 Skin 0.02 protein_coding synonymous_variant LOW 1752T>C Asp584Asp
M0093790 PHJEADHI_00227 243538 3 Skin 0.02 protein_coding synonymous_variant LOW 1749C>T Gly583Gly
M0093791 PHJEADHI_00227 243594 3 Skin 0.02 protein_coding synonymous_variant LOW 1693T>C Leu565Leu
M0093792 PHJEADHI_00227 243631 3 Skin 0.02 protein_coding synonymous_variant LOW 1656T>C Pro552Pro
M0093793 PHJEADHI_00227 244065 3 Skin 0.02 protein_coding missense_variant MODERATE 1222T>C Ser408Pro
M0093794 PHJEADHI_00297 331044 3 Skin 0.02 protein_coding synonymous_variant LOW 267C>T Arg89Arg
M0093795 PHJEADHI_00298 332201 3 Skin 0.02 protein_coding synonymous_variant LOW 1101A>G Pro367Pro
M0093796 PHJEADHI_00298 333317 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -16C>G None
M0093797 PHJEADHI_00301 335889 3 Skin 0.02 protein_coding missense_variant MODERATE 1001C>G Ala334Gly
M0093798 PHJEADHI_00301 335900 3 Skin 0.02 protein_coding synonymous_variant LOW 990A>G Gln330Gln
M0093799 PHJEADHI_00301 336146 3 Skin 0.02 protein_coding synonymous_variant LOW 744A>G Pro248Pro
M0093800 PHJEADHI_00301 336698 3 Skin 0.02 protein_coding synonymous_variant LOW 192C>T Asp64Asp
M0093801 PHJEADHI_00301 336719 3 Skin 0.02 protein_coding synonymous_variant LOW 171T>C Ala57Ala
M0093802 PHJEADHI_00301 336746 3 Skin 0.02 protein_coding synonymous_variant LOW 144A>G Ala48Ala
M0093803 PHJEADHI_00301 336751 3 Skin 0.02 protein_coding missense_variant MODERATE 139C>G Gln47Glu
M0093804 PHJEADHI_00301 336752 3 Skin 0.02 protein_coding synonymous_variant LOW 138T>C Asp46Asp
M0093805 PHJEADHI_00302 337254 3 Skin 0.02 protein_coding synonymous_variant LOW 1254A>G Gly418Gly
M0093806 PHJEADHI_00302 337278 4 Skin 0.02 protein_coding synonymous_variant LOW 1230A>G Thr410Thr
M0093807 PHJEADHI_00302 338255 3 Skin 0.02 protein_coding missense_variant MODERATE 253A>G Ile85Val
M0093808 PHJEADHI_00304 340497 3 Skin 0.02 protein_coding synonymous_variant LOW 652T>C Leu218Leu
M0093809 PHJEADHI_00386 432531 3 Skin 0.02 protein_coding missense_variant MODERATE 160A>C Met54Leu
M0093810 PHJEADHI_00386 432596 3 Skin 0.02 protein_coding synonymous_variant LOW 225C>T Asp75Asp
M0093811 PHJEADHI_00387 433938 3 Skin 0.02 protein_coding synonymous_variant LOW 486G>C Ala162Ala
M0093812 PHJEADHI_00387 433983 3 Skin 0.02 protein_coding synonymous_variant LOW 531A>G Thr177Thr
M0093813 PHJEADHI_00387 434040 3 Skin 0.02 protein_coding synonymous_variant LOW 588A>G Gln196Gln
M0093814 PHJEADHI_00387 434541 3 Skin 0.02 protein_coding synonymous_variant LOW 1089A>G Lys363Lys
M0093815 PHJEADHI_00387 434542 3 Skin 0.02 protein_coding missense_variant MODERATE 1090A>G Thr364Ala
M0093816 PHJEADHI_00387 434550 4 Skin 0.02 protein_coding synonymous_variant LOW 1098A>G Leu366Leu
M0093817 PHJEADHI_00388 434915 3 Skin 0.02 protein_coding synonymous_variant LOW 57C>T Leu19Leu
M0093818 PHJEADHI_00384 435701 3 Skin 0.02 protein_coding downstream_gene_variant MODIFIER *4643C>T None
M0093819 PHJEADHI_00384 435703 3 Skin 0.02 protein_coding downstream_gene_variant MODIFIER *4645T>C None
M0093820 PHJEADHI_00389 435934 3 Skin 0.02 protein_coding synonymous_variant LOW 213T>C Ile71Ile
M0093821 PHJEADHI_00065 69933 3 Skin 0.02 protein_coding missense_variant MODERATE 994C>G Arg332Gly
M0093822 PHJEADHI_00380 427697 3 Skin 0.02 protein_coding synonymous_variant LOW 349T>C Leu117Leu
M0093823 PHJEADHI_00380 427709 3 Skin 0.02 protein_coding missense_variant MODERATE 337G>A Val113Ile
M0093824 PHJEADHI_00230 250204 3 Skin 0.02 protein_coding missense_variant MODERATE 768C>G His256Gln
M0093825 PHJEADHI_00230 250224 3 Skin 0.02 protein_coding missense_variant MODERATE 748C>G Arg250Gly
M0093826 PHJEADHI_00230 250229 3 Skin 0.02 protein_coding missense_variant MODERATE 743A>G Gln248Arg
M0093827 PHJEADHI_00230 250252 3 Skin 0.02 protein_coding synonymous_variant LOW 720C>G Pro240Pro
M0093828 PHJEADHI_00230 250266 3 Skin 0.02 protein_coding synonymous_variant LOW 706C>T Leu236Leu
M0093829 PHJEADHI_00236 256650 3 Skin 0.02 protein_coding synonymous_variant LOW 411C>T Asp137Asp
M0093830 PHJEADHI_00236 256824 3 Skin 0.02 protein_coding synonymous_variant LOW 237C>T Ile79Ile
M0093831 PHJEADHI_00374 420906 3 Skin 0.02 protein_coding missense_variant MODERATE 164A>G Glu55Gly
M0093832 PHJEADHI_00429 474133 3 Skin 0.02 protein_coding synonymous_variant LOW 240T>C Asp80Asp
M0093833 PHJEADHI_00430 474464 3 Skin 0.02 protein_coding synonymous_variant LOW 966G>A Gly322Gly
M0093834 PHJEADHI_00430 474629 3 Skin 0.02 protein_coding synonymous_variant LOW 801T>C Val267Val
M0093835 PHJEADHI_00431 476223 3 Skin 0.02 protein_coding synonymous_variant LOW 870A>G Val290Val
M0093836 PHJEADHI_00351 393290 4 Skin 0.02 protein_coding synonymous_variant LOW 945T>C Val315Val
M0093837 PHJEADHI_00351 393326 3 Skin 0.02 protein_coding synonymous_variant LOW 909C>A Gly303Gly
M0093838 PHJEADHI_00345 385487 3 Skin 0.02 protein_coding synonymous_variant LOW 1836T>G Thr612Thr
M0093839 PHJEADHI_00345 385508 3 Skin 0.02 protein_coding synonymous_variant LOW 1815T>C Asn605Asn
M0093840 PHJEADHI_00345 386291 3 Skin 0.02 protein_coding synonymous_variant LOW 1032C>T Tyr344Tyr
M0093841 PHJEADHI_00345 386303 3 Skin 0.02 protein_coding synonymous_variant LOW 1020A>G Glu340Glu
M0093842 PHJEADHI_00348 390283 4 Skin 0.02 protein_coding synonymous_variant LOW 294A>C Gly98Gly
M0093843 PHJEADHI_00349 390939 3 Skin 0.02 protein_coding synonymous_variant LOW 1098A>G Gly366Gly
M0093844 PHJEADHI_00349 391569 3 Skin 0.02 protein_coding synonymous_variant LOW 468G>C Val156Val
M0093845 PHJEADHI_00350 392539 3 Skin 0.02 protein_coding synonymous_variant LOW 510A>G Arg170Arg
M0093846 PHJEADHI_00350 392680 3 Skin 0.02 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0093847 PHJEADHI_00350 392803 3 Skin 0.02 protein_coding synonymous_variant LOW 246A>C Ala82Ala
M0093848 PHJEADHI_00368 413858 3 Skin 0.02 protein_coding synonymous_variant LOW 396A>G Pro132Pro
M0093849 PHJEADHI_00229 248450 3 Skin 0.02 protein_coding synonymous_variant LOW 990C>T Leu330Leu
M0093850 PHJEADHI_00229 248479 3 Skin 0.02 protein_coding missense_variant MODERATE 961T>C Trp321Arg
M0093851 PHJEADHI_00229 249164 3 Skin 0.02 protein_coding synonymous_variant LOW 276T>G Pro92Pro
M0093852 PHJEADHI_00230 249488 3 Skin 0.02 protein_coding missense_variant MODERATE 1484T>C Val495Ala
M0093853 PHJEADHI_00040 40053 3 Skin 0.02 protein_coding synonymous_variant LOW 735T>C Thr245Thr
M0093854 PHJEADHI_00311 349323 3 Skin 0.02 protein_coding synonymous_variant LOW 2763A>G Pro921Pro
M0093855 PHJEADHI_00311 350916 3 Skin 0.02 protein_coding synonymous_variant LOW 1170A>G Leu390Leu
M0093856 PHJEADHI_00359 400803 3 Skin 0.02 protein_coding synonymous_variant LOW 546T>C Pro182Pro
M0093857 PHJEADHI_00354 401470 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4573G>C None
M0093858 PHJEADHI_00360 401518 3 Skin 0.02 protein_coding missense_variant MODERATE 1147C>G Gln383Glu
M0093859 PHJEADHI_00361 403307 3 Skin 0.02 protein_coding synonymous_variant LOW 445T>C Leu149Leu
M0093860 PHJEADHI_00362 405465 3 Skin 0.02 protein_coding synonymous_variant LOW 1692T>C Pro564Pro
M0093861 PHJEADHI_00363 405857 3 Skin 0.02 protein_coding synonymous_variant LOW 117G>C Ala39Ala
M0093862 PHJEADHI_00363 405991 3 Skin 0.02 protein_coding missense_variant MODERATE 251C>A Ala84Glu
M0093863 PHJEADHI_00363 405992 3 Skin 0.02 protein_coding synonymous_variant LOW 252A>C Ala84Ala
M0093864 PHJEADHI_00363 406112 3 Skin 0.02 protein_coding synonymous_variant LOW 372G>A Ala124Ala
M0093865 PHJEADHI_00363 406212 3 Skin 0.02 protein_coding missense_variant MODERATE 472A>G Asn158Asp
M0093866 PHJEADHI_00363 406222 3 Skin 0.02 protein_coding missense_variant MODERATE 482A>G Gln161Arg
M0093867 PHJEADHI_00363 406577 3 Skin 0.02 protein_coding synonymous_variant LOW 837T>C Phe279Phe
M0093868 PHJEADHI_00393 439731 3 Skin 0.02 protein_coding synonymous_variant LOW 525C>T His175His
M0093869 PHJEADHI_00394 441068 3 Skin 0.02 protein_coding synonymous_variant LOW 294T>C Pro98Pro
M0093870 PHJEADHI_00394 441242 3 Skin 0.02 protein_coding synonymous_variant LOW 120A>G Glu40Glu
M0093871 PHJEADHI_00394 441260 3 Skin 0.02 protein_coding synonymous_variant LOW 102T>C His34His
M0093872 PHJEADHI_00394 441335 4 Skin 0.02 protein_coding synonymous_variant LOW 27T>G Ser9Ser
M0093873 PHJEADHI_00395 441381 3 Skin 0.02 protein_coding missense_variant MODERATE 1051G>T Ala351Ser
M0093874 PHJEADHI_00395 441512 3 Skin 0.02 protein_coding missense_variant MODERATE 920G>A Gly307Asp
M0093875 PHJEADHI_00395 441683 3 Skin 0.02 protein_coding missense_variant MODERATE 749G>C Gly250Ala
M0093876 PHJEADHI_00395 441685 3 Skin 0.02 protein_coding synonymous_variant LOW 747T>G Leu249Leu
M0093877 PHJEADHI_00395 441692 3 Skin 0.02 protein_coding missense_variant MODERATE 740G>A Arg247His
M0093878 PHJEADHI_00024 24547 3 Skin 0.02 protein_coding synonymous_variant LOW 300C>G Thr100Thr
M0093879 PHJEADHI_00359 400506 3 Skin 0.02 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0093880 PHJEADHI_00359 400510 3 Skin 0.02 protein_coding missense_variant MODERATE 839A>G Asp280Gly
M0093881 PHJEADHI_00249 270043 3 Skin 0.02 protein_coding missense_variant MODERATE 1835C>A Thr612Lys
M0093882 PHJEADHI_00250 270723 3 Skin 0.02 protein_coding missense_variant MODERATE 803A>G Gln268Arg
M0093883 PHJEADHI_00250 270758 3 Skin 0.02 protein_coding synonymous_variant LOW 768T>G Ala256Ala
M0093884 PHJEADHI_00250 271232 3 Skin 0.02 protein_coding synonymous_variant LOW 294T>C Phe98Phe
M0093885 PHJEADHI_00250 271445 3 Skin 0.02 protein_coding synonymous_variant LOW 81C>T Ser27Ser
M0093886 PHJEADHI_00250 271568 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -43G>C None
M0093887 PHJEADHI_00237 257420 3 Skin 0.02 protein_coding synonymous_variant LOW 72A>G Pro24Pro
M0093888 PHJEADHI_00233 257751 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3402G>C None
M0093889 PHJEADHI_00238 258389 3 Skin 0.02 protein_coding synonymous_variant LOW 1050G>T Gly350Gly
M0093890 PHJEADHI_00238 258425 3 Skin 0.02 protein_coding synonymous_variant LOW 1014T>C Ile338Ile
M0093891 PHJEADHI_00238 259222 3 Skin 0.02 protein_coding missense_variant MODERATE 217A>G Thr73Ala
M0093892 PHJEADHI_00236 260086 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3026T>C None
M0093893 PHJEADHI_00397 444214 3 Skin 0.02 protein_coding missense_variant MODERATE 415G>C Val139Leu
M0093894 PHJEADHI_00397 444284 3 Skin 0.02 protein_coding synonymous_variant LOW 345G>C Val115Val
M0093895 PHJEADHI_00393 444642 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4387G>C None
M0093896 PHJEADHI_00027 27245 5 Skin 0.03 protein_coding synonymous_variant LOW 534A>G Leu178Leu
M0093897 PHJEADHI_00244 264665 3 Skin 0.02 protein_coding synonymous_variant LOW 801T>C Asn267Asn
M0093898 PHJEADHI_00245 265136 3 Skin 0.02 protein_coding missense_variant MODERATE 376A>G Thr126Ala
M0093899 PHJEADHI_00246 265556 3 Skin 0.02 protein_coding missense_variant MODERATE 215G>T Arg72Leu
M0093900 PHJEADHI_00247 266789 3 Skin 0.02 protein_coding synonymous_variant LOW 444T>C Thr148Thr
M0093901 PHJEADHI_00249 269352 3 Skin 0.02 protein_coding synonymous_variant LOW 1144T>C Leu382Leu
M0093902 PHJEADHI_00399 445390 3 Skin 0.02 protein_coding synonymous_variant LOW 24T>C His8His
M0093903 PHJEADHI_00399 445459 3 Skin 0.02 protein_coding synonymous_variant LOW 93C>T His31His
M0093904 PHJEADHI_00399 445666 3 Skin 0.02 protein_coding synonymous_variant LOW 300C>T Asp100Asp
M0093905 PHJEADHI_00400 446208 3 Skin 0.02 protein_coding synonymous_variant LOW 57T>C Pro19Pro
M0093906 PHJEADHI_00400 446251 3 Skin 0.02 protein_coding synonymous_variant LOW 100T>C Leu34Leu
M0093907 PHJEADHI_00400 446625 3 Skin 0.02 protein_coding synonymous_variant LOW 474G>C Thr158Thr
M0093908 PHJEADHI_00400 446628 3 Skin 0.02 protein_coding synonymous_variant LOW 477C>G Arg159Arg
M0093909 PHJEADHI_00400 446691 3 Skin 0.02 protein_coding synonymous_variant LOW 540T>C Asp180Asp
M0093910 PHJEADHI_00400 446694 3 Skin 0.02 protein_coding synonymous_variant LOW 543T>C Gly181Gly
M0093911 PHJEADHI_00400 446973 5 Skin 0.03 protein_coding synonymous_variant LOW 822T>C Ser274Ser
M0093912 PHJEADHI_00254 274515 3 Skin 0.02 protein_coding synonymous_variant LOW 291C>G Pro97Pro
M0093913 PHJEADHI_00254 274703 3 Skin 0.02 protein_coding missense_variant MODERATE 103A>G Asn35Asp
M0093914 PHJEADHI_00254 274748 3 Skin 0.02 protein_coding missense_variant MODERATE 58C>T Pro20Ser
M0093915 PHJEADHI_00254 274761 3 Skin 0.02 protein_coding synonymous_variant LOW 45T>G Arg15Arg
M0093916 PHJEADHI_00254 274774 3 Skin 0.02 protein_coding missense_variant MODERATE 32G>C Gly11Ala
M0093917 PHJEADHI_00254 274776 3 Skin 0.02 protein_coding synonymous_variant LOW 30A>G Arg10Arg
M0093918 PHJEADHI_00254 274780 3 Skin 0.02 protein_coding missense_variant MODERATE 26G>T Ser9Ile
M0093919 PHJEADHI_00250 274913 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3388C>T None
M0093920 PHJEADHI_00255 275313 3 Skin 0.02 protein_coding synonymous_variant LOW 339A>G Thr113Thr
M0093921 PHJEADHI_00255 275343 3 Skin 0.02 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0093922 PHJEADHI_00255 275535 3 Skin 0.02 protein_coding synonymous_variant LOW 561T>C Pro187Pro
M0093923 PHJEADHI_00255 275554 3 Skin 0.02 protein_coding missense_variant MODERATE 580A>G Lys194Glu
M0093924 PHJEADHI_00398 444909 3 Skin 0.02 protein_coding missense_variant MODERATE 151A>G Thr51Ala
M0093925 PHJEADHI_00398 444916 3 Skin 0.02 protein_coding missense_variant MODERATE 158G>A Cys53Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PHJEADHI_00045 AYF03124.1|GT2 100 0 1 777 1 1
PHJEADHI_00047 AYF03126.1|GH8 100 4.04e-262 1 361 1 1
PHJEADHI_00202 QEU06869.1|GH94 96.9 0 1 731 1 0.8186
PHJEADHI_00229 AYF03289.1|GT4 100 4.96e-245 1 348 1 1
PHJEADHI_00242 AYF03302.1|GH1 100 2.17e-239 1 312 1 1
PHJEADHI_00314 AYF03374.1|GT1 100 2.67e-289 1 400 1 1
PHJEADHI_00335 AYF03395.1|GT2|GT4 100 0 1 884 1 1
PHJEADHI_00363 AYF03423.1|GT4 100 6.99e-303 1 413 1 1
PHJEADHI_00365 AYF03425.1|GT4 100 0 1 426 1 1
PHJEADHI_00394 WAJ29215.1|GT0 75 2.26e-201 1 360 0.9756 0.9756
PHJEADHI_00395 AYF03454.1|GT4 100 3.64e-247 1 357 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
PHJEADHI_00004 2.A.21.7.5 79.4 2.1e-241 5 573 0.9930 0.9913 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
PHJEADHI_00332 5.A.1.3.1 71.9 2.7e-101 10 273 0.9635 0.9458 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.1 The Disulfide Bond Oxidoreductase D (DsbD) Family