Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C569
  Reference Plasmid   NZ_CP032409.1
  Reference Plasmid Size   39331
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0095557 HBJGLMNL_00003 1370 8 Skin 0.67 protein_coding synonymous_variant LOW 465A>G Ser155Ser
M0095558 HBJGLMNL_00004 1839 8 Skin 0.67 protein_coding synonymous_variant LOW 534T>C Leu178Leu
M0095559 HBJGLMNL_00006 3298 8 Skin 0.67 protein_coding missense_variant MODERATE 229A>G Thr77Ala
M0095560 HBJGLMNL_00004 1845 3 Skin 0.25 protein_coding synonymous_variant LOW 528C>T Asp176Asp
M0095561 HBJGLMNL_00004 2124 3 Skin 0.25 protein_coding synonymous_variant LOW 249T>G Ser83Ser
M0095562 HBJGLMNL_00004 2283 3 Skin 0.25 protein_coding synonymous_variant LOW 90G>T Val30Val
M0095563 HBJGLMNL_00004 2300 3 Skin 0.25 protein_coding missense_variant MODERATE 73A>G Ile25Val
M0095564 HBJGLMNL_00004 2301 3 Skin 0.25 protein_coding synonymous_variant LOW 72C>G Ala24Ala
M0095565 HBJGLMNL_00004 2331 3 Skin 0.25 protein_coding synonymous_variant LOW 42C>G Ala14Ala
M0095566 HBJGLMNL_00004 2346 3 Skin 0.25 protein_coding synonymous_variant LOW 27C>T Ala9Ala
M0095567 HBJGLMNL_00004 2348 3 Skin 0.25 protein_coding missense_variant MODERATE 25G>C Ala9Pro
M0095568 HBJGLMNL_00004 2349 3 Skin 0.25 protein_coding synonymous_variant LOW 24G>A Thr8Thr
M0095569 HBJGLMNL_00001 2379 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2010A>G None
M0095570 HBJGLMNL_00005 2579 3 Skin 0.25 protein_coding synonymous_variant LOW 297C>G Val99Val
M0095571 HBJGLMNL_00005 2627 3 Skin 0.25 protein_coding synonymous_variant LOW 249G>C Thr83Thr
M0095572 HBJGLMNL_00005 2642 3 Skin 0.25 protein_coding synonymous_variant LOW 234C>T Ala78Ala
M0095573 HBJGLMNL_00005 2691 3 Skin 0.25 protein_coding missense_variant MODERATE 185C>T Ala62Val
M0095574 HBJGLMNL_00005 2696 3 Skin 0.25 protein_coding synonymous_variant LOW 180G>T Leu60Leu
M0095575 HBJGLMNL_00005 2735 3 Skin 0.25 protein_coding synonymous_variant LOW 141T>C Ile47Ile
M0095576 HBJGLMNL_00006 3211 3 Skin 0.25 protein_coding synonymous_variant LOW 316C>T Leu106Leu
M0095577 HBJGLMNL_00006 3263 3 Skin 0.25 protein_coding synonymous_variant LOW 264A>C Ile88Ile
M0095578 HBJGLMNL_00006 3326 3 Skin 0.25 protein_coding synonymous_variant LOW 201G>A Gln67Gln
M0095579 HBJGLMNL_00006 3329 3 Skin 0.25 protein_coding synonymous_variant LOW 198T>C Ile66Ile
M0095580 HBJGLMNL_00006 3362 3 Skin 0.25 protein_coding synonymous_variant LOW 165G>C Val55Val
M0095581 HBJGLMNL_00006 3371 3 Skin 0.25 protein_coding synonymous_variant LOW 156C>G Ala52Ala
M0095582 HBJGLMNL_00006 3374 3 Skin 0.25 protein_coding synonymous_variant LOW 153T>G Ala51Ala
M0095583 HBJGLMNL_00006 3390 3 Skin 0.25 protein_coding missense_variant MODERATE 137C>T Ala46Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term