Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C572
  Reference Plasmid   NZ_CP033246.1
  Reference Plasmid Size   882416
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0168628 EFNPBEDA_00138 184105 4 Gut 0.14 protein_coding missense_variant MODERATE 668T>C Ile223Thr
M0168629 EFNPBEDA_00081 109292 3 Gut 0.11 protein_coding synonymous_variant LOW 591T>C Tyr197Tyr
M0168630 EFNPBEDA_00081 110034 3 Gut 0.11 protein_coding missense_variant MODERATE 1333T>G Ser445Ala
M0168631 EFNPBEDA_00082 110423 3 Gut 0.11 protein_coding missense_variant MODERATE 48C>A Asn16Lys
M0168632 EFNPBEDA_00082 110468 3 Gut 0.11 protein_coding synonymous_variant LOW 93G>A Val31Val
M0168633 EFNPBEDA_00082 110646 3 Gut 0.11 protein_coding missense_variant MODERATE 271T>G Tyr91Asp
M0168634 EFNPBEDA_00082 110756 3 Gut 0.11 protein_coding synonymous_variant LOW 381G>A Glu127Glu
M0168635 EFNPBEDA_00082 110909 3 Gut 0.11 protein_coding missense_variant MODERATE 534A>C Arg178Ser
M0168636 EFNPBEDA_00082 111188 3 Gut 0.11 protein_coding missense_variant MODERATE 813A>T Glu271Asp
M0168637 EFNPBEDA_00082 111303 3 Gut 0.11 protein_coding missense_variant MODERATE 928A>C Ile310Leu
M0168638 EFNPBEDA_00082 111377 3 Gut 0.11 protein_coding synonymous_variant LOW 1002C>T Gly334Gly
M0168639 EFNPBEDA_00082 111785 3 Gut 0.11 protein_coding synonymous_variant LOW 1410C>T Leu470Leu
M0168640 EFNPBEDA_00082 111818 3 Gut 0.11 protein_coding synonymous_variant LOW 1443T>A Ala481Ala
M0168641 EFNPBEDA_00082 111827 3 Gut 0.11 protein_coding synonymous_variant LOW 1452G>T Ala484Ala
M0168642 EFNPBEDA_00082 111836 3 Gut 0.11 protein_coding synonymous_variant LOW 1461A>C Gly487Gly
M0168643 EFNPBEDA_00082 111843 3 Gut 0.11 protein_coding missense_variant MODERATE 1468A>G Ile490Val
M0168644 EFNPBEDA_00083 112393 3 Gut 0.11 protein_coding missense_variant MODERATE 52A>G Lys18Glu
M0168645 EFNPBEDA_00084 112726 3 Gut 0.11 protein_coding missense_variant MODERATE 106A>G Thr36Ala
M0168646 EFNPBEDA_00084 112867 3 Gut 0.11 protein_coding missense_variant MODERATE 247A>G Lys83Glu
M0168647 EFNPBEDA_00085 113526 3 Gut 0.11 protein_coding stop_lost&splice_region_variant HIGH 108G>T Ter36Tyrext*?
M0168648 EFNPBEDA_00088 116824 3 Gut 0.11 protein_coding missense_variant MODERATE 700A>G Ile234Val
M0168649 EFNPBEDA_00090 118320 3 Gut 0.11 protein_coding synonymous_variant LOW 1149G>A Arg383Arg
M0168650 EFNPBEDA_00090 118332 3 Gut 0.11 protein_coding synonymous_variant LOW 1137G>A Gln379Gln
M0168651 EFNPBEDA_00090 118428 3 Gut 0.11 protein_coding synonymous_variant LOW 1041T>C Asp347Asp
M0168652 EFNPBEDA_00090 118443 3 Gut 0.11 protein_coding synonymous_variant LOW 1026G>A Arg342Arg
M0168653 EFNPBEDA_00090 118461 3 Gut 0.11 protein_coding synonymous_variant LOW 1008T>A Thr336Thr
M0168654 EFNPBEDA_00090 118476 3 Gut 0.11 protein_coding synonymous_variant LOW 993C>T Ile331Ile
M0168655 EFNPBEDA_00090 118578 3 Gut 0.11 protein_coding synonymous_variant LOW 891C>A Ala297Ala
M0168656 EFNPBEDA_00090 118758 3 Gut 0.11 protein_coding synonymous_variant LOW 711G>A Val237Val
M0168657 EFNPBEDA_00090 118811 3 Gut 0.11 protein_coding missense_variant MODERATE 658G>C Glu220Gln
M0168658 EFNPBEDA_00090 118863 3 Gut 0.11 protein_coding synonymous_variant LOW 606T>A Ala202Ala
M0168659 EFNPBEDA_00090 118890 3 Gut 0.11 protein_coding synonymous_variant LOW 579T>C Cys193Cys
M0168660 EFNPBEDA_00090 118938 3 Gut 0.11 protein_coding synonymous_variant LOW 531G>A Leu177Leu
M0168661 EFNPBEDA_00090 119010 3 Gut 0.11 protein_coding synonymous_variant LOW 459A>C Leu153Leu
M0168662 EFNPBEDA_00090 119016 3 Gut 0.11 protein_coding synonymous_variant LOW 453C>A Ala151Ala
M0168663 EFNPBEDA_00090 119022 3 Gut 0.11 protein_coding synonymous_variant LOW 447A>G Leu149Leu
M0168664 EFNPBEDA_00090 119105 3 Gut 0.11 protein_coding missense_variant MODERATE 364G>A Val122Ile
M0168665 EFNPBEDA_00090 119232 3 Gut 0.11 protein_coding synonymous_variant LOW 237G>T Ser79Ser
M0168666 EFNPBEDA_00090 119238 3 Gut 0.11 protein_coding synonymous_variant LOW 231A>G Gly77Gly
M0168667 EFNPBEDA_00090 119388 3 Gut 0.11 protein_coding synonymous_variant LOW 81A>G Gly27Gly
M0168668 EFNPBEDA_00090 119508 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -40C>T None
M0168669 EFNPBEDA_00090 119599 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -131C>T None
M0168670 EFNPBEDA_00090 119638 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -170A>C None
M0168671 EFNPBEDA_00090 119659 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -191C>A None
M0168672 EFNPBEDA_00090 119675 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -207T>C None
M0168673 EFNPBEDA_00090 119720 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -252A>C None
M0168674 EFNPBEDA_00090 119727 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -259G>A None
M0168675 EFNPBEDA_00091 119819 3 Gut 0.11 protein_coding missense_variant MODERATE 1810A>T Asn604Tyr
M0168676 EFNPBEDA_00091 119844 3 Gut 0.11 protein_coding synonymous_variant LOW 1785A>G Leu595Leu
M0168677 EFNPBEDA_00091 119870 3 Gut 0.11 protein_coding missense_variant MODERATE 1759T>A Ser587Thr
M0168678 EFNPBEDA_00091 119952 3 Gut 0.11 protein_coding synonymous_variant LOW 1677T>C Asp559Asp
M0168679 EFNPBEDA_00091 120027 3 Gut 0.11 protein_coding synonymous_variant LOW 1602C>T Ser534Ser
M0168680 EFNPBEDA_00091 121341 3 Gut 0.11 protein_coding synonymous_variant LOW 288A>G Lys96Lys
M0168681 EFNPBEDA_00091 121399 3 Gut 0.11 protein_coding missense_variant MODERATE 230A>G Glu77Gly
M0168682 EFNPBEDA_00093 122099 3 Gut 0.11 protein_coding missense_variant MODERATE 12T>G Asp4Glu
M0168683 EFNPBEDA_00094 124457 3 Gut 0.11 protein_coding synonymous_variant LOW 507G>A Lys169Lys
M0168684 EFNPBEDA_00094 124460 3 Gut 0.11 protein_coding missense_variant MODERATE 504A>T Leu168Phe
M0168685 EFNPBEDA_00094 124462 3 Gut 0.11 protein_coding missense_variant MODERATE 502T>A Leu168Ile
M0168686 EFNPBEDA_00094 124466 3 Gut 0.11 protein_coding synonymous_variant LOW 498A>G Lys166Lys
M0168687 EFNPBEDA_00094 124478 3 Gut 0.11 protein_coding synonymous_variant LOW 486G>A Val162Val
M0168688 EFNPBEDA_00094 124558 3 Gut 0.11 protein_coding missense_variant MODERATE 406A>G Ser136Gly
M0168689 EFNPBEDA_00094 124559 3 Gut 0.11 protein_coding synonymous_variant LOW 405C>T Cys135Cys
M0168690 EFNPBEDA_00094 124747 3 Gut 0.11 protein_coding missense_variant MODERATE 217C>T His73Tyr
M0168691 EFNPBEDA_00094 124762 3 Gut 0.11 protein_coding missense_variant MODERATE 202G>C Ala68Pro
M0168692 EFNPBEDA_00094 124763 3 Gut 0.11 protein_coding synonymous_variant LOW 201T>C Asn67Asn
M0168693 EFNPBEDA_00095 125292 3 Gut 0.11 protein_coding missense_variant MODERATE 200T>G Val67Gly
M0168694 EFNPBEDA_00095 125294 3 Gut 0.11 protein_coding missense_variant MODERATE 202T>A Leu68Ile
M0168695 EFNPBEDA_00095 125305 3 Gut 0.11 protein_coding synonymous_variant LOW 213G>T Val71Val
M0168696 EFNPBEDA_00095 125317 3 Gut 0.11 protein_coding synonymous_variant LOW 225T>A Thr75Thr
M0168697 EFNPBEDA_00095 126179 3 Gut 0.11 protein_coding missense_variant MODERATE 1087A>G Ile363Val
M0168698 EFNPBEDA_00096 127759 3 Gut 0.11 protein_coding synonymous_variant LOW 912C>T Pro304Pro
M0168699 EFNPBEDA_00097 129507 3 Gut 0.11 protein_coding missense_variant MODERATE 740C>A Pro247His
M0168700 EFNPBEDA_00098 130401 3 Gut 0.11 protein_coding missense_variant MODERATE 553A>G Ile185Val
M0168701 EFNPBEDA_00105 146843 3 Gut 0.11 protein_coding missense_variant MODERATE 1480A>T Ile494Phe
M0168702 EFNPBEDA_00105 146881 3 Gut 0.11 protein_coding synonymous_variant LOW 1518G>A Thr506Thr
M0168703 EFNPBEDA_00105 146896 3 Gut 0.11 protein_coding synonymous_variant LOW 1533G>A Lys511Lys
M0168704 EFNPBEDA_00106 146931 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -175T>G None
M0168705 EFNPBEDA_00106 146932 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -174A>G None
M0168706 EFNPBEDA_00106 146936 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -170A>G None
M0168707 EFNPBEDA_00106 146944 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -162C>G None
M0168708 EFNPBEDA_00106 147077 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -29T>A None
M0168709 EFNPBEDA_00106 147086 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -20G>A None
M0168710 EFNPBEDA_00106 147157 3 Gut 0.11 protein_coding synonymous_variant LOW 52T>C Leu18Leu
M0168711 EFNPBEDA_00106 147192 3 Gut 0.11 protein_coding synonymous_variant LOW 87A>G Lys29Lys
M0168712 EFNPBEDA_00106 147204 3 Gut 0.11 protein_coding missense_variant MODERATE 99A>G Ile33Met
M0168713 EFNPBEDA_00106 147246 3 Gut 0.11 protein_coding synonymous_variant LOW 141C>T Asp47Asp
M0168714 EFNPBEDA_00106 147363 3 Gut 0.11 protein_coding synonymous_variant LOW 258G>A Arg86Arg
M0168715 EFNPBEDA_00106 147372 3 Gut 0.11 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0168716 EFNPBEDA_00106 147375 3 Gut 0.11 protein_coding synonymous_variant LOW 270A>C Ile90Ile
M0168717 EFNPBEDA_00106 147384 3 Gut 0.11 protein_coding synonymous_variant LOW 279T>G Ala93Ala
M0168718 EFNPBEDA_00106 147399 3 Gut 0.11 protein_coding synonymous_variant LOW 294T>A Ile98Ile
M0168719 EFNPBEDA_00106 147432 3 Gut 0.11 protein_coding synonymous_variant LOW 327G>A Glu109Glu
M0168720 EFNPBEDA_00106 147474 3 Gut 0.11 protein_coding synonymous_variant LOW 369G>A Val123Val
M0168721 EFNPBEDA_00106 147543 3 Gut 0.11 protein_coding synonymous_variant LOW 438T>C Asn146Asn
M0168722 EFNPBEDA_00106 147558 3 Gut 0.11 protein_coding synonymous_variant LOW 453A>T Val151Val
M0168723 EFNPBEDA_00106 147572 3 Gut 0.11 protein_coding missense_variant MODERATE 467G>A Arg156Lys
M0168724 EFNPBEDA_00106 147595 3 Gut 0.11 protein_coding missense_variant MODERATE 490C>T His164Tyr
M0168725 EFNPBEDA_00106 147601 3 Gut 0.11 protein_coding missense_variant MODERATE 496A>G Ile166Val
M0168726 EFNPBEDA_00106 147604 3 Gut 0.11 protein_coding missense_variant MODERATE 499G>A Glu167Lys
M0168727 EFNPBEDA_00106 147657 3 Gut 0.11 protein_coding synonymous_variant LOW 552A>G Gly184Gly
M0168728 EFNPBEDA_00106 147663 3 Gut 0.11 protein_coding synonymous_variant LOW 558G>A Lys186Lys
M0168729 EFNPBEDA_00107 147733 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -122T>G None
M0168730 EFNPBEDA_00107 147834 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -21G>A None
M0168731 EFNPBEDA_00107 148808 3 Gut 0.11 protein_coding synonymous_variant LOW 954T>C Asn318Asn
M0168732 EFNPBEDA_00107 148823 3 Gut 0.11 protein_coding missense_variant MODERATE 969T>G Asn323Lys
M0168733 EFNPBEDA_00107 148871 3 Gut 0.11 protein_coding missense_variant MODERATE 1017T>G Asn339Lys
M0168734 EFNPBEDA_00107 148885 3 Gut 0.11 protein_coding missense_variant MODERATE 1031C>G Ala344Gly
M0168735 EFNPBEDA_00107 149024 3 Gut 0.11 protein_coding synonymous_variant LOW 1170C>A Gly390Gly
M0168736 EFNPBEDA_00111 153368 3 Gut 0.11 protein_coding synonymous_variant LOW 339G>T Thr113Thr
M0168737 EFNPBEDA_00111 153389 3 Gut 0.11 protein_coding synonymous_variant LOW 360A>G Arg120Arg
M0168738 EFNPBEDA_00111 153438 3 Gut 0.11 protein_coding missense_variant MODERATE 409G>A Glu137Lys
M0168739 EFNPBEDA_00109 153605 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2318C>G None
M0168740 EFNPBEDA_00109 153622 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2335C>A None
M0168741 EFNPBEDA_00109 153664 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2377A>C None
M0168742 EFNPBEDA_00109 153669 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2382T>C None
M0168743 EFNPBEDA_00112 153762 3 Gut 0.11 protein_coding missense_variant MODERATE 53A>G Glu18Gly
M0168744 EFNPBEDA_00112 153830 3 Gut 0.11 protein_coding missense_variant MODERATE 121G>A Glu41Lys
M0168745 EFNPBEDA_00112 153838 3 Gut 0.11 protein_coding missense_variant MODERATE 129A>G Ile43Met
M0168746 EFNPBEDA_00112 153969 3 Gut 0.11 protein_coding missense_variant MODERATE 260T>C Phe87Ser
M0168747 EFNPBEDA_00112 154018 3 Gut 0.11 protein_coding synonymous_variant LOW 309T>C Arg103Arg
M0168748 EFNPBEDA_00112 154024 3 Gut 0.11 protein_coding synonymous_variant LOW 315A>T Ala105Ala
M0168749 EFNPBEDA_00112 154038 3 Gut 0.11 protein_coding missense_variant MODERATE 329T>C Ile110Thr
M0168750 EFNPBEDA_00113 154692 3 Gut 0.11 protein_coding missense_variant MODERATE 10C>T His4Tyr
M0168751 EFNPBEDA_00113 155900 3 Gut 0.11 protein_coding synonymous_variant LOW 1218G>A Gln406Gln
M0168752 EFNPBEDA_00109 156149 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4862C>A None
M0168753 EFNPBEDA_00109 156180 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4893C>T None
M0168754 EFNPBEDA_00110 156916 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4207T>C None
M0168755 EFNPBEDA_00110 156946 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4237C>A None
M0168756 EFNPBEDA_00114 157157 3 Gut 0.11 protein_coding synonymous_variant LOW 360T>G Thr120Thr
M0168757 EFNPBEDA_00114 157218 3 Gut 0.11 protein_coding missense_variant MODERATE 299A>G Glu100Gly
M0168758 EFNPBEDA_00110 157582 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4873G>A None
M0168759 EFNPBEDA_00115 157907 3 Gut 0.11 protein_coding missense_variant MODERATE 739G>C Asp247His
M0168760 EFNPBEDA_00115 158067 3 Gut 0.11 protein_coding synonymous_variant LOW 579C>A Ile193Ile
M0168761 EFNPBEDA_00144 191397 3 Gut 0.11 protein_coding synonymous_variant LOW 693G>A Ala231Ala
M0168762 EFNPBEDA_00030 42975 3 Gut 0.11 protein_coding missense_variant MODERATE 9T>G Asn3Lys
M0168763 EFNPBEDA_00031 44990 3 Gut 0.11 protein_coding missense_variant MODERATE 808A>G Ser270Gly
M0168764 EFNPBEDA_00033 48430 3 Gut 0.11 protein_coding missense_variant MODERATE 1027T>C Ser343Pro
M0168765 EFNPBEDA_00298 349238 3 Gut 0.11 protein_coding synonymous_variant LOW 792G>A Arg264Arg
M0168766 EFNPBEDA_00302 352561 3 Gut 0.11 protein_coding missense_variant MODERATE 414G>T Glu138Asp
M0168767 EFNPBEDA_00302 352571 3 Gut 0.11 protein_coding synonymous_variant LOW 424T>C Leu142Leu
M0168768 EFNPBEDA_00645 706105 3 Gut 0.11 protein_coding synonymous_variant LOW 855A>G Gly285Gly
M0168769 EFNPBEDA_00645 706228 3 Gut 0.11 protein_coding missense_variant MODERATE 732A>T Glu244Asp
M0168770 EFNPBEDA_00645 706245 3 Gut 0.11 protein_coding missense_variant MODERATE 715A>G Ile239Val
M0168771 EFNPBEDA_00645 706246 3 Gut 0.11 protein_coding synonymous_variant LOW 714T>C Asp238Asp
M0168772 EFNPBEDA_00645 706282 3 Gut 0.11 protein_coding synonymous_variant LOW 678A>G Val226Val
M0168773 EFNPBEDA_00645 706286 3 Gut 0.11 protein_coding missense_variant MODERATE 674C>G Ala225Gly
M0168774 EFNPBEDA_00645 706356 3 Gut 0.11 protein_coding missense_variant MODERATE 604T>G Ser202Ala
M0168775 EFNPBEDA_00645 706917 3 Gut 0.11 protein_coding missense_variant MODERATE 43A>T Ser15Cys
M0168776 EFNPBEDA_00645 706922 3 Gut 0.11 protein_coding missense_variant MODERATE 38A>T Asn13Ile
M0168777 EFNPBEDA_00646 707022 3 Gut 0.11 protein_coding missense_variant MODERATE 642A>C Glu214Asp
M0168778 EFNPBEDA_00646 707508 3 Gut 0.11 protein_coding synonymous_variant LOW 156A>C Val52Val
M0168779 EFNPBEDA_00646 707575 3 Gut 0.11 protein_coding missense_variant MODERATE 89C>T Ala30Val
M0168780 EFNPBEDA_00643 707703 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4493A>G None
M0168781 EFNPBEDA_00643 707723 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4513G>T None
M0168782 EFNPBEDA_00647 707768 3 Gut 0.11 protein_coding synonymous_variant LOW 720T>C Asp240Asp
M0168783 EFNPBEDA_00647 707810 3 Gut 0.11 protein_coding missense_variant MODERATE 678A>G Ile226Met
M0168784 EFNPBEDA_00647 707851 3 Gut 0.11 protein_coding missense_variant MODERATE 637C>T Pro213Ser
M0168785 EFNPBEDA_00648 708968 3 Gut 0.11 protein_coding missense_variant MODERATE 430T>C Phe144Leu
M0168786 EFNPBEDA_00648 709118 3 Gut 0.11 protein_coding missense_variant MODERATE 280A>C Lys94Gln
M0168787 EFNPBEDA_00644 709477 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3777G>A None
M0168788 EFNPBEDA_00644 710181 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4481T>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EFNPBEDA_00078 QGH20124.1|GH31 100 0 1 781 1 1
EFNPBEDA_00079 QGH24160.1|GH3 100 0 1 707 1 1
EFNPBEDA_00080 QGH20126.1|GH95 100 0 1 799 1 1
EFNPBEDA_00091 QGH20134.1|GT4 100 0 1 622 1 1
EFNPBEDA_00093 QGH20136.1|GT2|GT4 100 0 1 609 1 1
EFNPBEDA_00098 QGH24176.1|GH12 100 2.85e-186 1 246 1 1
EFNPBEDA_00099 QGH20142.1|GH2 100 0 1 930 1 1
EFNPBEDA_00104 QGH20147.1|GH74 100 0 1 777 1 1
EFNPBEDA_00105 QJU46751.1|GH13_44 100 0 1 515 1 1
EFNPBEDA_00108 QGH20151.1|GH1 100 0 2 470 0.9979 1
EFNPBEDA_00135 QGH24211.1|GH32 100 0 1 491 1 1
EFNPBEDA_00231 QGH20263.1|GH38 100 0 1 870 1 1
EFNPBEDA_00240 QGH20271.1|GH4 100 0 1 441 1 1
EFNPBEDA_00267 QGH24331.1|CE4 100 1.68e-186 1 291 1 0.9209
EFNPBEDA_00333 QCJ08657.1|GH13_29 100 0 1 552 1 1
EFNPBEDA_00417 AXB86842.1|GH170 100 1.04e-268 1 360 1 1
EFNPBEDA_00422 ANF16086.1|GH4 100 1.14999999850097e-315 1 436 1 1
EFNPBEDA_00514 QGH20513.1|GH1 100 0 1 479 1 1
EFNPBEDA_00516 QGH24549.1|CBM4|GH16_3 100 0 1 1251 1 1
EFNPBEDA_00581 QGH20562.1|CE4 100 3.19e-186 1 252 1 1
EFNPBEDA_00613 QGH24633.1|GH53 100 4.36e-265 1 341 1 1
EFNPBEDA_00614 QGH24634.1|GH42 100 0 1 687 1 1
EFNPBEDA_00636 AXB87048.1|GH4 100 0 1 444 1 1
EFNPBEDA_00666 QGH24680.1|GH24 100 0 1 547 1 1
EFNPBEDA_00764 QUF85207.1|CE8|PL9_1 98.4 0 1 1038 1 0.7616





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
EFNPBEDA_00045 4.A.6.1.6 72.9 1e-136 1 325 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
EFNPBEDA_00046 4.A.6.1.6 76 1.1e-107 1 268 1.0000 0.8364 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
EFNPBEDA_00047 4.A.6.1.15 75.9 1.7e-136 1 303 1.0000 0.9439 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family