Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C612
  Reference Plasmid   NZ_CP035885.1
  Reference Plasmid Size   163137
  Reference Plasmid GC Content   0.49
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0169663 MPKKIMGJ_00139 118571 3 Gut 0.06 protein_coding synonymous_variant LOW 465G>T Arg155Arg
M0169664 MPKKIMGJ_00170 145247 3 Gut 0.06 protein_coding missense_variant MODERATE 173G>A Gly58Asp
M0169665 MPKKIMGJ_00165 145730 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3968A>G None
M0169666 MPKKIMGJ_00101 83887 3 Gut 0.06 protein_coding missense_variant MODERATE 1177G>A Glu393Lys
M0169667 MPKKIMGJ_00101 84392 3 Gut 0.06 protein_coding synonymous_variant LOW 672G>T Val224Val
M0169668 MPKKIMGJ_00142 119962 9 Gut 0.17 protein_coding synonymous_variant LOW 46T>C Leu16Leu
M0169669 MPKKIMGJ_00143 120294 9 Gut 0.17 protein_coding synonymous_variant LOW 969A>G Ala323Ala
M0169670 MPKKIMGJ_00144 121513 4 Gut 0.08 protein_coding missense_variant MODERATE 1300A>G Asn434Asp
M0169671 MPKKIMGJ_00144 122489 4 Gut 0.08 protein_coding synonymous_variant LOW 324C>T Ile108Ile
M0169672 MPKKIMGJ_00146 123628 4 Gut 0.08 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0169673 MPKKIMGJ_00146 123630 4 Gut 0.08 protein_coding missense_variant MODERATE 23C>T Thr8Met
M0169674 MPKKIMGJ_00146 123637 5 Gut 0.09 protein_coding missense_variant MODERATE 16C>A Leu6Ile
M0169675 MPKKIMGJ_00147 124328 4 Gut 0.08 protein_coding synonymous_variant LOW 501T>C Ala167Ala
M0169676 MPKKIMGJ_00147 124796 4 Gut 0.08 protein_coding synonymous_variant LOW 969T>C Asn323Asn
M0169677 MPKKIMGJ_00147 125145 4 Gut 0.08 protein_coding missense_variant MODERATE 1318A>G Thr440Ala
M0169678 MPKKIMGJ_00147 125884 3 Gut 0.06 protein_coding missense_variant MODERATE 2057T>C Val686Ala
M0169679 MPKKIMGJ_00147 126098 3 Gut 0.06 protein_coding synonymous_variant LOW 2271T>C Asp757Asp
M0169680 MPKKIMGJ_00147 126888 3 Gut 0.06 protein_coding missense_variant MODERATE 3061G>A Asp1021Asn
M0169681 MPKKIMGJ_00148 127811 3 Gut 0.06 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0169682 MPKKIMGJ_00150 128379 3 Gut 0.06 protein_coding synonymous_variant LOW 21C>T Ser7Ser
M0169683 MPKKIMGJ_00150 128527 3 Gut 0.06 protein_coding stop_gained HIGH 169C>T Gln57*
M0169684 MPKKIMGJ_00158 132608 3 Gut 0.06 protein_coding synonymous_variant LOW 21A>G Gly7Gly
M0169685 MPKKIMGJ_00148 132719 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4621C>T None
M0169686 MPKKIMGJ_00161 134389 3 Gut 0.06 protein_coding synonymous_variant LOW 339T>C Ser113Ser
M0169687 MPKKIMGJ_00088 75793 3 Gut 0.06 protein_coding synonymous_variant LOW 108G>T Ala36Ala
M0169688 MPKKIMGJ_00089 76131 4 Gut 0.08 protein_coding synonymous_variant LOW 201G>T Thr67Thr
M0169689 MPKKIMGJ_00090 76769 4 Gut 0.08 protein_coding missense_variant MODERATE 1576C>T Leu526Phe
M0169690 MPKKIMGJ_00090 76853 4 Gut 0.08 protein_coding missense_variant MODERATE 1492T>C Phe498Leu
M0169691 MPKKIMGJ_00090 77930 4 Gut 0.08 protein_coding missense_variant MODERATE 415T>C Ser139Pro
M0169692 MPKKIMGJ_00090 78339 4 Gut 0.08 protein_coding synonymous_variant LOW 6A>T Ser2Ser
M0169693 MPKKIMGJ_00087 79553 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4372G>A None
M0169694 MPKKIMGJ_00003 3757 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3021A>C None
M0169695 MPKKIMGJ_00003 3858 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3122C>A None
M0169696 MPKKIMGJ_00006 4705 4 Gut 0.08 protein_coding synonymous_variant LOW 531T>C His177His
M0169697 MPKKIMGJ_00006 4798 4 Gut 0.08 protein_coding synonymous_variant LOW 624G>T Ser208Ser
M0169698 MPKKIMGJ_00006 4813 4 Gut 0.08 protein_coding synonymous_variant LOW 639G>C Thr213Thr
M0169699 MPKKIMGJ_00006 4814 4 Gut 0.08 protein_coding synonymous_variant LOW 640C>A Arg214Arg
M0169700 MPKKIMGJ_00006 4816 4 Gut 0.08 protein_coding synonymous_variant LOW 642G>A Arg214Arg
M0169701 MPKKIMGJ_00007 5479 4 Gut 0.08 protein_coding synonymous_variant LOW 657A>G Pro219Pro
M0169702 MPKKIMGJ_00007 5569 4 Gut 0.08 protein_coding synonymous_variant LOW 567T>C Leu189Leu
M0169703 MPKKIMGJ_00007 5578 4 Gut 0.08 protein_coding synonymous_variant LOW 558G>A Lys186Lys
M0169704 MPKKIMGJ_00011 12532 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -1944T>C None
M0169705 MPKKIMGJ_00014 12721 3 Gut 0.06 protein_coding synonymous_variant LOW 1209C>T Ser403Ser
M0169706 MPKKIMGJ_00014 12843 3 Gut 0.06 protein_coding missense_variant MODERATE 1087A>G Thr363Ala
M0169707 MPKKIMGJ_00014 13171 3 Gut 0.06 protein_coding synonymous_variant LOW 759T>C Val253Val
M0169708 MPKKIMGJ_00014 13715 3 Gut 0.06 protein_coding missense_variant MODERATE 215T>C Leu72Ser
M0169709 MPKKIMGJ_00014 13774 3 Gut 0.06 protein_coding synonymous_variant LOW 156C>T Cys52Cys
M0169710 MPKKIMGJ_00011 14049 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3461T>C None
M0169711 MPKKIMGJ_00011 14130 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3542G>A None
M0169712 MPKKIMGJ_00011 14184 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3596G>A None
M0169713 MPKKIMGJ_00011 14294 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3706T>C None
M0169714 MPKKIMGJ_00022 21034 3 Gut 0.06 protein_coding synonymous_variant LOW 234G>A Gly78Gly
M0169715 MPKKIMGJ_00023 21353 3 Gut 0.06 protein_coding synonymous_variant LOW 681G>T Gly227Gly
M0169716 MPKKIMGJ_00022 24729 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3462C>A None
M0169717 MPKKIMGJ_00022 24802 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3535T>C None
M0169718 MPKKIMGJ_00026 25023 4 Gut 0.08 protein_coding synonymous_variant LOW 57A>C Val19Val
M0169719 MPKKIMGJ_00026 25048 3 Gut 0.06 protein_coding missense_variant MODERATE 82A>G Arg28Gly
M0169720 MPKKIMGJ_00029 27281 3 Gut 0.06 protein_coding missense_variant MODERATE 977T>G Leu326Arg
M0169721 MPKKIMGJ_00024 27768 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4690G>A None
M0169722 MPKKIMGJ_00024 27881 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4803T>C None
M0169723 MPKKIMGJ_00024 27993 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4915T>C None
M0169724 MPKKIMGJ_00024 27994 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4916A>G None
M0169725 MPKKIMGJ_00030 28184 4 Gut 0.08 protein_coding missense_variant MODERATE 294G>A Met98Ile
M0169726 MPKKIMGJ_00030 28205 4 Gut 0.08 protein_coding missense_variant MODERATE 273G>T Gln91His
M0169727 MPKKIMGJ_00048 42082 3 Gut 0.06 protein_coding synonymous_variant LOW 2103T>C Ser701Ser
M0169728 MPKKIMGJ_00107 94378 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4765T>A None
M0169729 MPKKIMGJ_00114 94541 4 Gut 0.08 protein_coding synonymous_variant LOW 123G>A Val41Val
M0169730 MPKKIMGJ_00114 94646 4 Gut 0.08 protein_coding synonymous_variant LOW 228G>T Gly76Gly
M0169731 MPKKIMGJ_00115 95168 4 Gut 0.08 protein_coding missense_variant MODERATE 466G>T Ala156Ser
M0169732 MPKKIMGJ_00108 95694 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4295C>T None
M0169733 MPKKIMGJ_00118 97956 5 Gut 0.09 protein_coding missense_variant MODERATE 110G>T Arg37Ile
M0169734 MPKKIMGJ_00119 98114 4 Gut 0.08 protein_coding synonymous_variant LOW 2010T>A Ser670Ser
M0169735 MPKKIMGJ_00119 98122 5 Gut 0.09 protein_coding stop_gained HIGH 2002G>T Glu668*
M0169736 MPKKIMGJ_00119 98145 5 Gut 0.09 protein_coding missense_variant MODERATE 1979A>C Asp660Ala
M0169737 MPKKIMGJ_00119 98227 5 Gut 0.09 protein_coding missense_variant MODERATE 1897T>C Ser633Pro
M0169738 MPKKIMGJ_00121 101800 6 Gut 0.11 protein_coding synonymous_variant LOW 522G>A Thr174Thr
M0169739 MPKKIMGJ_00122 102146 6 Gut 0.11 protein_coding stop_gained HIGH 192G>A Trp64*
M0169740 MPKKIMGJ_00117 102375 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4826T>C None
M0169741 MPKKIMGJ_00118 102563 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4498T>C None
M0169742 MPKKIMGJ_00123 102754 6 Gut 0.11 protein_coding missense_variant MODERATE 268G>A Glu90Lys
M0169743 MPKKIMGJ_00124 103270 6 Gut 0.11 protein_coding missense_variant MODERATE 95C>T Ala32Val
M0169744 MPKKIMGJ_00124 103357 6 Gut 0.11 protein_coding missense_variant MODERATE 8A>G Gln3Arg
M0169745 MPKKIMGJ_00119 103368 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3245A>T None
M0169746 MPKKIMGJ_00119 104517 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4394G>A None
M0169747 MPKKIMGJ_00119 104526 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4403A>G None
M0169748 MPKKIMGJ_00119 104898 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4775C>T None
M0169749 MPKKIMGJ_00120 105169 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4054T>C None
M0169750 MPKKIMGJ_00120 105306 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4191G>A None
M0169751 MPKKIMGJ_00122 106501 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4164G>A None
M0169752 MPKKIMGJ_00122 106976 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4639T>A None
M0169753 MPKKIMGJ_00127 107313 6 Gut 0.11 protein_coding synonymous_variant LOW 48C>T Arg16Arg
M0169754 MPKKIMGJ_00123 108001 6 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4980C>G None
M0169755 MPKKIMGJ_00128 108543 6 Gut 0.11 protein_coding missense_variant MODERATE 877C>T His293Tyr
M0169756 MPKKIMGJ_00128 109234 6 Gut 0.11 protein_coding missense_variant MODERATE 186A>C Arg62Ser
M0169757 MPKKIMGJ_00128 109235 6 Gut 0.11 protein_coding missense_variant MODERATE 185G>A Arg62Lys
M0169758 MPKKIMGJ_00129 111264 6 Gut 0.11 protein_coding synonymous_variant LOW 771T>A Val257Val
M0169759 MPKKIMGJ_00131 112665 5 Gut 0.09 protein_coding missense_variant MODERATE 710C>T Thr237Ile
M0169760 MPKKIMGJ_00131 113366 5 Gut 0.09 protein_coding synonymous_variant LOW 9G>A Lys3Lys
M0169761 MPKKIMGJ_00128 113404 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3985T>G None
M0169762 MPKKIMGJ_00128 113477 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4058G>A None
M0169763 MPKKIMGJ_00128 113478 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4059A>G None
M0169764 MPKKIMGJ_00132 113792 5 Gut 0.09 protein_coding missense_variant MODERATE 161G>A Gly54Asp
M0169765 MPKKIMGJ_00128 113800 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4381A>G None
M0169766 MPKKIMGJ_00128 113861 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4442G>T None
M0169767 MPKKIMGJ_00174 148148 5 Gut 0.09 protein_coding missense_variant MODERATE 515T>C Val172Ala
M0169768 MPKKIMGJ_00174 148306 4 Gut 0.08 protein_coding synonymous_variant LOW 357T>A Arg119Arg
M0169769 MPKKIMGJ_00004 1641 3 Gut 0.06 protein_coding synonymous_variant LOW 615T>G Pro205Pro
M0169770 MPKKIMGJ_00175 148807 3 Gut 0.06 protein_coding synonymous_variant LOW 57C>T Ser19Ser
M0169771 MPKKIMGJ_00175 148815 3 Gut 0.06 protein_coding missense_variant MODERATE 49C>G Leu17Val
M0169772 MPKKIMGJ_00175 148816 3 Gut 0.06 protein_coding synonymous_variant LOW 48G>A Pro16Pro
M0169773 MPKKIMGJ_00176 148920 6 Gut 0.11 protein_coding synonymous_variant LOW 267T>C Ile89Ile
M0169774 MPKKIMGJ_00176 149093 6 Gut 0.11 protein_coding missense_variant MODERATE 94G>A Ala32Thr
M0169775 MPKKIMGJ_00173 147569 3 Gut 0.06 protein_coding missense_variant MODERATE 348A>T Lys116Asn
M0169776 MPKKIMGJ_00053 49909 3 Gut 0.06 protein_coding synonymous_variant LOW 1515T>G Val505Val
M0169777 MPKKIMGJ_00053 50869 3 Gut 0.06 protein_coding synonymous_variant LOW 555C>T Asp185Asp
M0169778 MPKKIMGJ_00139 118641 5 Gut 0.09 protein_coding missense_variant MODERATE 535G>A Ala179Thr
M0169779 MPKKIMGJ_00139 118643 5 Gut 0.09 protein_coding synonymous_variant LOW 537G>A Ala179Ala
M0169780 MPKKIMGJ_00139 118658 5 Gut 0.09 protein_coding synonymous_variant LOW 552C>T Phe184Phe
M0169781 MPKKIMGJ_00139 118663 5 Gut 0.09 protein_coding missense_variant MODERATE 557A>G Asn186Ser
M0169782 MPKKIMGJ_00139 118685 5 Gut 0.09 protein_coding synonymous_variant LOW 579A>G Val193Val
M0169783 MPKKIMGJ_00139 118690 5 Gut 0.09 protein_coding stop_lost&splice_region_variant HIGH 584A>G Ter195Trpext*?
M0169784 MPKKIMGJ_00133 118721 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4618A>C None
M0169785 MPKKIMGJ_00133 118733 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4630C>A None
M0169786 MPKKIMGJ_00133 118739 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4636A>G None
M0169787 MPKKIMGJ_00133 118743 5 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4640G>T None
M0169788 MPKKIMGJ_00140 118754 5 Gut 0.09 protein_coding synonymous_variant LOW 9G>A Gly3Gly
M0169789 MPKKIMGJ_00140 118768 5 Gut 0.09 protein_coding missense_variant MODERATE 23G>A Ser8Asn
M0169790 MPKKIMGJ_00140 118775 5 Gut 0.09 protein_coding synonymous_variant LOW 30G>A Ala10Ala
M0169791 MPKKIMGJ_00140 118799 5 Gut 0.09 protein_coding synonymous_variant LOW 54C>A Gly18Gly
M0169792 MPKKIMGJ_00140 118841 5 Gut 0.09 protein_coding synonymous_variant LOW 96C>A Ile32Ile
M0169793 MPKKIMGJ_00140 118845 5 Gut 0.09 protein_coding missense_variant MODERATE 100G>A Val34Ile
M0169794 MPKKIMGJ_00143 121239 5 Gut 0.09 protein_coding synonymous_variant LOW 24A>T Ala8Ala
M0169795 MPKKIMGJ_00146 123598 5 Gut 0.09 protein_coding missense_variant MODERATE 55C>T His19Tyr
M0169796 MPKKIMGJ_00138 117966 3 Gut 0.06 protein_coding synonymous_variant LOW 96C>G Val32Val
M0169797 MPKKIMGJ_00138 117969 3 Gut 0.06 protein_coding synonymous_variant LOW 99C>T Ala33Ala
M0169798 MPKKIMGJ_00138 117984 3 Gut 0.06 protein_coding synonymous_variant LOW 114T>C Val38Val
M0169799 MPKKIMGJ_00138 118038 3 Gut 0.06 protein_coding synonymous_variant LOW 168C>T Arg56Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
MPKKIMGJ_00082 VFG001445 TraJ 74 7e-80 1 196 0.8522 0.9751 Invasion unknown protein experiment
MPKKIMGJ_00171 VFG036066 Heat-labile toxin (LT) 99.5 5.3e-130 1 218 1.0 0.845 Exotoxin heat-labile enterotoxin A prepeptide (from human) experiment
MPKKIMGJ_00186 VFG042382 EtpA 99.3 0 1 603 1.0 1 Adherence two-partner secretion transporter EtpB experiment
MPKKIMGJ_00187 VFG034541 EtpA 92.5 0 1 1511 1.0 0.9818 Adherence Two-partner secreted adhesin EtpA experiment
MPKKIMGJ_00082 VFG001445 TraJ 74 5.2e-79 1 196 0.8522 0.9751 Invasion unknown protein prediction
MPKKIMGJ_00128 VFG042509 Adhesive fimbriae 98.9 6.7e-214 1 363 1.0 1 Adherence CS17 fimbriae minor subunit prediction
MPKKIMGJ_00129 VFG042508 Adhesive fimbriae 100 0 1 872 1.0 1 Adherence CS17 fimbriae outer membrane usher protein prediction
MPKKIMGJ_00130 VFG001438 Adhesive fimbriae 100 2.7e-85 1 168 1.0 1 Adherence CS17 fimbrial subunit prediction
MPKKIMGJ_00131 VFG042506 Adhesive fimbriae 100 1.1e-129 1 236 0.9958 0.9958 Adherence CS17 fimbriae periplasmic chaperone prediction
MPKKIMGJ_00165 VFG033834 Pic 98.5 0 1 1364 1.0 0.9985 Effector delivery system Pic serine protease precursor, autotransporter prediction
MPKKIMGJ_00171 VFG036065 Heat-labile toxin (LT) 100 1.1e-129 1 218 1.0 0.845 Exotoxin heat-labile enterotoxin A prepeptide (from human) prediction
MPKKIMGJ_00186 VFG042382 EtpA 99.3 0 1 603 1.0 1 Adherence two-partner secretion transporter EtpB prediction
MPKKIMGJ_00187 VFG034541 EtpA 92.5 0 1 1511 1.0 0.9818 Adherence Two-partner secreted adhesin EtpA prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MPKKIMGJ_00171 PHI:698 CtxA 80.7 2.9e-106 1 218 1.0000 0.8450 primates cholera Cholera toxin (CT) reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MPKKIMGJ_00084 QAZ75040.1|GH23 99.4 8.23e-123 1 169 1 1
MPKKIMGJ_00189 CBJ04457.1|GT41 98.9 0 1 636 1 0.9984





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MPKKIMGJ_00001 9.B.127.1.3 95.1 7.8e-76 1 144 1.0000 0.8780 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.127 The DUF2919 (PF11143) Family
MPKKIMGJ_00113 8.B.24.2.1 100 1.8e-68 1 127 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.B Ribosomally synthesized protein/peptide toxins/agonists that target channels and carriers 8.B.24 The Colicin Immunity Protein (ColIP) Functional Family
MPKKIMGJ_00171 1.C.72.4.1 99.5 3.1e-129 1 218 1.0000 0.8450 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.72 The Pertussis Toxin (PTX) Family
MPKKIMGJ_00186 1.B.20.3.3 99.3 0 1 603 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.20 The Two-Partner Secretion (TPS) Family