Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C652
  Reference Plasmid   NZ_CP042004.1
  Reference Plasmid Size   46487
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0096221 OCHONPAH_00039 31465 5 Skin 0.71 protein_coding synonymous_variant LOW 27A>G Glu9Glu
M0096222 OCHONPAH_00039 31468 5 Skin 0.71 protein_coding synonymous_variant LOW 30T>C Ala10Ala
M0096223 OCHONPAH_00039 31507 5 Skin 0.71 protein_coding synonymous_variant LOW 69C>T Asp23Asp
M0096224 OCHONPAH_00039 31514 5 Skin 0.71 protein_coding synonymous_variant LOW 76T>C Leu26Leu
M0096225 OCHONPAH_00039 31516 5 Skin 0.71 protein_coding missense_variant MODERATE 78A>T Leu26Phe
M0096226 OCHONPAH_00039 31522 5 Skin 0.71 protein_coding synonymous_variant LOW 84A>G Lys28Lys
M0096227 OCHONPAH_00039 31523 5 Skin 0.71 protein_coding missense_variant MODERATE 85A>G Thr29Ala
M0096228 OCHONPAH_00039 31524 5 Skin 0.71 protein_coding missense_variant MODERATE 86C>T Thr29Met
M0096229 OCHONPAH_00039 31528 5 Skin 0.71 protein_coding synonymous_variant LOW 90C>T Asn30Asn
M0096230 OCHONPAH_00039 31534 5 Skin 0.71 protein_coding synonymous_variant LOW 96C>A Ile32Ile
M0096231 OCHONPAH_00039 31569 5 Skin 0.71 protein_coding missense_variant MODERATE 131A>G Gln44Arg
M0096232 OCHONPAH_00039 31594 5 Skin 0.71 protein_coding synonymous_variant LOW 156G>A Pro52Pro
M0096233 OCHONPAH_00039 31630 5 Skin 0.71 protein_coding synonymous_variant LOW 192A>G Leu64Leu
M0096234 OCHONPAH_00039 31678 5 Skin 0.71 protein_coding synonymous_variant LOW 240C>A Gly80Gly
M0096235 OCHONPAH_00039 31696 5 Skin 0.71 protein_coding synonymous_variant LOW 258T>C Gly86Gly
M0096236 OCHONPAH_00039 31697 5 Skin 0.71 protein_coding missense_variant MODERATE 259A>G Thr87Ala
M0096237 OCHONPAH_00039 31744 5 Skin 0.71 protein_coding synonymous_variant LOW 306G>A Gln102Gln
M0096238 OCHONPAH_00039 31767 4 Skin 0.57 protein_coding missense_variant MODERATE 329G>A Gly110Asp
M0096239 OCHONPAH_00040 31815 5 Skin 0.71 protein_coding missense_variant MODERATE 64G>A Val22Ile
M0096240 OCHONPAH_00040 31882 5 Skin 0.71 protein_coding missense_variant MODERATE 131C>T Ser44Phe
M0096241 OCHONPAH_00040 31902 5 Skin 0.71 protein_coding missense_variant MODERATE 151A>G Lys51Glu
M0096242 OCHONPAH_00040 31904 5 Skin 0.71 protein_coding missense_variant MODERATE 153G>T Lys51Asn
M0096243 OCHONPAH_00040 31993 5 Skin 0.71 protein_coding missense_variant MODERATE 242C>A Thr81Lys
M0096244 OCHONPAH_00040 32041 5 Skin 0.71 protein_coding missense_variant MODERATE 290C>T Ala97Val
M0096245 OCHONPAH_00040 32067 5 Skin 0.71 protein_coding missense_variant MODERATE 316G>T Ala106Ser
M0096246 OCHONPAH_00040 32283 4 Skin 0.57 protein_coding missense_variant MODERATE 532G>A Asp178Asn
M0096247 OCHONPAH_00040 32461 5 Skin 0.71 protein_coding missense_variant MODERATE 710A>G Gln237Arg
M0096248 OCHONPAH_00040 32477 5 Skin 0.71 protein_coding synonymous_variant LOW 726A>G Leu242Leu
M0096249 OCHONPAH_00040 32499 5 Skin 0.71 protein_coding missense_variant MODERATE 748G>A Val250Ile
M0096250 OCHONPAH_00040 32510 5 Skin 0.71 protein_coding synonymous_variant LOW 759C>T Asn253Asn
M0096251 OCHONPAH_00040 32554 5 Skin 0.71 protein_coding missense_variant MODERATE 803C>T Ser268Leu
M0096252 OCHONPAH_00040 32615 4 Skin 0.57 protein_coding synonymous_variant LOW 864C>T Tyr288Tyr
M0096253 OCHONPAH_00040 32663 3 Skin 0.43 protein_coding synonymous_variant LOW 912T>C Asn304Asn
M0096254 OCHONPAH_00040 32676 3 Skin 0.43 protein_coding missense_variant MODERATE 925G>A Asp309Asn
M0096255 OCHONPAH_00040 32830 5 Skin 0.71 protein_coding missense_variant MODERATE 1079A>C Glu360Ala
M0096256 OCHONPAH_00040 32845 5 Skin 0.71 protein_coding missense_variant MODERATE 1094G>A Gly365Glu
M0096257 OCHONPAH_00040 32847 5 Skin 0.71 protein_coding missense_variant MODERATE 1096C>T His366Tyr
M0096258 OCHONPAH_00040 32853 5 Skin 0.71 protein_coding missense_variant MODERATE 1102A>G Ile368Val
M0096259 OCHONPAH_00040 32873 5 Skin 0.71 protein_coding synonymous_variant LOW 1122C>T Asp374Asp
M0096260 OCHONPAH_00040 32919 5 Skin 0.71 protein_coding missense_variant MODERATE 1168G>A Ala390Thr
M0096261 OCHONPAH_00040 32964 5 Skin 0.71 protein_coding missense_variant MODERATE 1213A>G Ile405Val
M0096262 OCHONPAH_00040 32980 5 Skin 0.71 protein_coding missense_variant MODERATE 1229A>G Asn410Ser
M0096263 OCHONPAH_00040 32987 5 Skin 0.71 protein_coding synonymous_variant LOW 1236T>C Asp412Asp
M0096264 OCHONPAH_00040 33006 5 Skin 0.71 protein_coding missense_variant MODERATE 1255G>A Asp419Asn
M0096265 OCHONPAH_00040 33177 5 Skin 0.71 protein_coding synonymous_variant LOW 1426C>T Leu476Leu
M0096266 OCHONPAH_00040 33227 5 Skin 0.71 protein_coding synonymous_variant LOW 1476C>T Pro492Pro
M0096267 OCHONPAH_00040 33353 5 Skin 0.71 protein_coding synonymous_variant LOW 1602T>G Val534Val
M0096268 OCHONPAH_00040 33368 5 Skin 0.71 protein_coding synonymous_variant LOW 1617A>G Leu539Leu
M0096269 OCHONPAH_00040 33384 5 Skin 0.71 protein_coding missense_variant MODERATE 1633C>A Arg545Ser
M0096270 OCHONPAH_00040 33482 5 Skin 0.71 protein_coding synonymous_variant LOW 1731A>G Gly577Gly
M0096271 OCHONPAH_00041 33496 5 Skin 0.71 protein_coding start_lost HIGH 3G>T Met1?
M0096272 OCHONPAH_00041 33535 5 Skin 0.71 protein_coding synonymous_variant LOW 42A>G Thr14Thr
M0096273 OCHONPAH_00041 33569 5 Skin 0.71 protein_coding missense_variant MODERATE 76G>A Gly26Ser
M0096274 OCHONPAH_00041 33570 5 Skin 0.71 protein_coding missense_variant MODERATE 77G>A Gly26Asp
M0096275 OCHONPAH_00041 33574 5 Skin 0.71 protein_coding synonymous_variant LOW 81G>T Val27Val
M0096276 OCHONPAH_00041 33616 5 Skin 0.71 protein_coding synonymous_variant LOW 123A>C Ser41Ser
M0096277 OCHONPAH_00041 33646 5 Skin 0.71 protein_coding synonymous_variant LOW 153T>C Gly51Gly
M0096278 OCHONPAH_00041 33725 5 Skin 0.71 protein_coding missense_variant MODERATE 232A>G Lys78Glu
M0096279 OCHONPAH_00041 33736 5 Skin 0.71 protein_coding synonymous_variant LOW 243G>A Val81Val
M0096280 OCHONPAH_00041 33740 5 Skin 0.71 protein_coding missense_variant MODERATE 247C>A Gln83Lys
M0096281 OCHONPAH_00041 33791 5 Skin 0.71 protein_coding missense_variant MODERATE 298G>A Glu100Lys
M0096282 OCHONPAH_00041 33795 5 Skin 0.71 protein_coding missense_variant MODERATE 302A>C Lys101Thr
M0096283 OCHONPAH_00041 33814 5 Skin 0.71 protein_coding synonymous_variant LOW 321C>T Asp107Asp
M0096284 OCHONPAH_00041 33860 5 Skin 0.71 protein_coding synonymous_variant LOW 367T>C Leu123Leu
M0096285 OCHONPAH_00041 33880 5 Skin 0.71 protein_coding missense_variant MODERATE 387C>A Asn129Lys
M0096286 OCHONPAH_00041 33901 5 Skin 0.71 protein_coding synonymous_variant LOW 408T>C Asn136Asn
M0096287 OCHONPAH_00041 33937 5 Skin 0.71 protein_coding synonymous_variant LOW 444G>A Glu148Glu
M0096288 OCHONPAH_00041 33986 5 Skin 0.71 protein_coding synonymous_variant LOW 493C>T Leu165Leu
M0096289 OCHONPAH_00041 34000 5 Skin 0.71 protein_coding synonymous_variant LOW 507A>G Glu169Glu
M0096290 OCHONPAH_00041 34018 5 Skin 0.71 protein_coding synonymous_variant LOW 525T>C Asn175Asn
M0096291 OCHONPAH_00041 34036 5 Skin 0.71 protein_coding synonymous_variant LOW 543T>C Arg181Arg
M0096292 OCHONPAH_00041 34061 5 Skin 0.71 protein_coding missense_variant MODERATE 568T>C Tyr190His
M0096293 OCHONPAH_00041 34069 5 Skin 0.71 protein_coding missense_variant MODERATE 576C>G Ile192Met
M0096294 OCHONPAH_00041 34150 5 Skin 0.71 protein_coding synonymous_variant LOW 657A>G Glu219Glu
M0096295 OCHONPAH_00041 34159 5 Skin 0.71 protein_coding synonymous_variant LOW 666A>G Thr222Thr
M0096296 OCHONPAH_00041 34219 5 Skin 0.71 protein_coding synonymous_variant LOW 726A>G Gly242Gly
M0096297 OCHONPAH_00041 34228 5 Skin 0.71 protein_coding synonymous_variant LOW 735C>G Val245Val
M0096298 OCHONPAH_00041 34274 5 Skin 0.71 protein_coding missense_variant MODERATE 781A>G Lys261Glu
M0096299 OCHONPAH_00041 34306 5 Skin 0.71 protein_coding missense_variant MODERATE 813T>G Phe271Leu
M0096300 OCHONPAH_00041 34324 5 Skin 0.71 protein_coding synonymous_variant LOW 831C>T His277His
M0096301 OCHONPAH_00041 34342 5 Skin 0.71 protein_coding synonymous_variant LOW 849T>C Asp283Asp
M0096302 OCHONPAH_00040 32006 3 Skin 0.43 protein_coding missense_variant MODERATE 255A>G Ile85Met
M0096303 OCHONPAH_00041 34369 4 Skin 0.57 protein_coding synonymous_variant LOW 876T>C Thr292Thr
M0096304 OCHONPAH_00041 34372 4 Skin 0.57 protein_coding synonymous_variant LOW 879T>G Gly293Gly
M0096305 OCHONPAH_00041 34456 4 Skin 0.57 protein_coding synonymous_variant LOW 963A>G Glu321Glu
M0096306 OCHONPAH_00041 34465 4 Skin 0.57 protein_coding synonymous_variant LOW 972T>G Gly324Gly
M0096307 OCHONPAH_00041 34516 3 Skin 0.43 protein_coding synonymous_variant LOW 1023A>T Thr341Thr
M0096308 OCHONPAH_00041 34585 3 Skin 0.43 protein_coding synonymous_variant LOW 1092T>C Asn364Asn
M0096309 OCHONPAH_00041 34592 3 Skin 0.43 protein_coding missense_variant MODERATE 1099G>A Glu367Lys
M0096310 OCHONPAH_00041 34606 3 Skin 0.43 protein_coding synonymous_variant LOW 1113C>T Gly371Gly
M0096311 OCHONPAH_00041 34625 3 Skin 0.43 protein_coding missense_variant MODERATE 1132T>G Ser378Ala
M0096312 OCHONPAH_00041 34642 3 Skin 0.43 protein_coding synonymous_variant LOW 1149T>C Asn383Asn
M0096313 OCHONPAH_00041 34660 3 Skin 0.43 protein_coding synonymous_variant LOW 1167T>C Gly389Gly
M0096314 OCHONPAH_00041 34690 3 Skin 0.43 protein_coding synonymous_variant LOW 1197C>T Asp399Asp
M0096315 OCHONPAH_00041 34729 3 Skin 0.43 protein_coding synonymous_variant LOW 1236C>T Gly412Gly
M0096316 OCHONPAH_00041 34771 3 Skin 0.43 protein_coding synonymous_variant LOW 1278A>G Ala426Ala
M0096317 OCHONPAH_00038 30839 3 Skin 0.43 protein_coding synonymous_variant LOW 69C>T Tyr23Tyr
M0096318 OCHONPAH_00038 30903 3 Skin 0.43 protein_coding missense_variant MODERATE 133G>A Val45Ile
M0096319 OCHONPAH_00038 30953 3 Skin 0.43 protein_coding synonymous_variant LOW 183T>C Ile61Ile
M0096320 OCHONPAH_00038 30969 3 Skin 0.43 protein_coding synonymous_variant LOW 199T>C Leu67Leu
M0096321 OCHONPAH_00038 31049 3 Skin 0.43 protein_coding synonymous_variant LOW 279G>A Leu93Leu
M0096322 OCHONPAH_00038 31082 3 Skin 0.43 protein_coding synonymous_variant LOW 312A>G Leu104Leu
M0096323 OCHONPAH_00038 31083 3 Skin 0.43 protein_coding synonymous_variant LOW 313C>T Leu105Leu
M0096324 OCHONPAH_00038 31085 3 Skin 0.43 protein_coding synonymous_variant LOW 315A>T Leu105Leu
M0096325 OCHONPAH_00038 31091 3 Skin 0.43 protein_coding synonymous_variant LOW 321A>G Lys107Lys
M0096326 OCHONPAH_00038 31094 3 Skin 0.43 protein_coding synonymous_variant LOW 324C>T Phe108Phe
M0096327 OCHONPAH_00038 31109 3 Skin 0.43 protein_coding synonymous_variant LOW 339T>C Ile113Ile
M0096328 OCHONPAH_00038 31144 3 Skin 0.43 protein_coding missense_variant MODERATE 374G>A Arg125Lys
M0096329 OCHONPAH_00038 31161 3 Skin 0.43 protein_coding synonymous_variant LOW 391C>A Arg131Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
OCHONPAH_00043 Arsenic (As), Antimony (Sb) 91.1 1.1e-211 2 430 0.9977 1.0000 experiment
OCHONPAH_00044 Arsenic (As) 89.1 2.1e-68 1 129 0.9699 0.9847 experiment
OCHONPAH_00043 Arsenic (As), Antimony (Sb) 100 9.7e-225 1 430 1.0000 1.0000 prediction
OCHONPAH_00044 Arsenic (As) 93.8 1.9e-70 1 130 0.9774 0.9924 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
OCHONPAH_00031 ARO:3008823 97.9 1.23e-192 1 281 1.0000 1.0000 penicillin beta-lactam BlaZ beta-lactamase antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
OCHONPAH_00043 2.A.45.1.1 90.4 8.8e-208 2 430 0.9977 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.45 The Arsenite-Antimonite (ArsB) Efflux Family