Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C664
  Reference Plasmid   NZ_CP044176.1
  Reference Plasmid Size   95141
  Reference Plasmid GC Content   0.26
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0170783 IHIHOCFH_00047 34698 3 Gut 1.00 protein_coding missense_variant MODERATE 538A>G Asn180Asp
M0170784 IHIHOCFH_00050 35276 3 Gut 1.00 protein_coding synonymous_variant LOW 24A>G Thr8Thr
M0170785 IHIHOCFH_00050 35305 3 Gut 1.00 protein_coding missense_variant MODERATE 53C>T Thr18Ile
M0170786 IHIHOCFH_00040 35930 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4357G>A None
M0170787 IHIHOCFH_00040 36009 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4436A>G None
M0170788 IHIHOCFH_00052 36112 3 Gut 1.00 protein_coding synonymous_variant LOW 54T>C Ser18Ser
M0170789 IHIHOCFH_00052 36134 3 Gut 1.00 protein_coding missense_variant MODERATE 76C>T His26Tyr
M0170790 IHIHOCFH_00052 36667 3 Gut 1.00 protein_coding synonymous_variant LOW 609T>C Ser203Ser
M0170791 IHIHOCFH_00053 37802 3 Gut 1.00 protein_coding synonymous_variant LOW 1002G>A Gly334Gly
M0170792 IHIHOCFH_00053 37868 3 Gut 1.00 protein_coding synonymous_variant LOW 1068T>C Ser356Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
IHIHOCFH_00059 ALU99866.1|GH24 98 3.57999999999915e-312 1 452 0.9956 0.7267





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
IHIHOCFH_00064 3.A.23.3.1 99.2 0 1 999 1.0000 7.6846 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.23 The Type VI Symbiosis/Virulence Secretory System (T6SS) Family
IHIHOCFH_00066 3.A.23.3.1 98.6 9.7e-74 1 141 0.9527 1.0846 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.23 The Type VI Symbiosis/Virulence Secretory System (T6SS) Family
IHIHOCFH_00083 3.A.23.3.1 98.6 9.7e-74 1 141 0.9527 1.0846 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.23 The Type VI Symbiosis/Virulence Secretory System (T6SS) Family
IHIHOCFH_00084 3.A.23.3.1 98.8 0 1 690 1.0000 5.3077 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.23 The Type VI Symbiosis/Virulence Secretory System (T6SS) Family
IHIHOCFH_00098 3.A.23.3.1 98.3 2e-163 1 298 1.0000 2.2923 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.23 The Type VI Symbiosis/Virulence Secretory System (T6SS) Family