Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C671
  Reference Plasmid   NZ_CP045787.1
  Reference Plasmid Size   2679
  Reference Plasmid GC Content   0.46
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0171185 IBOGOMKK_00001 508 7 Gut 0.54 protein_coding synonymous_variant LOW 156A>C Ile52Ile
M0171186 IBOGOMKK_00001 559 7 Gut 0.54 protein_coding synonymous_variant LOW 105C>T Ala35Ala
M0171187 IBOGOMKK_00001 565 7 Gut 0.54 protein_coding synonymous_variant LOW 99G>A Glu33Glu
M0171188 IBOGOMKK_00001 589 7 Gut 0.54 protein_coding synonymous_variant LOW 75A>G Lys25Lys
M0171189 IBOGOMKK_00001 610 7 Gut 0.54 protein_coding synonymous_variant LOW 54G>A Gln18Gln
M0171190 IBOGOMKK_00001 615 7 Gut 0.54 protein_coding missense_variant MODERATE 49G>A Gly17Ser
M0171191 IBOGOMKK_00001 628 7 Gut 0.54 protein_coding synonymous_variant LOW 36G>A Ala12Ala
M0171192 IBOGOMKK_00001 645 7 Gut 0.54 protein_coding missense_variant MODERATE 19A>G Thr7Ala
M0171193 IBOGOMKK_00001 700 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -37T>C None
M0171194 IBOGOMKK_00001 736 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -73C>T None
M0171195 IBOGOMKK_00001 738 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -75A>G None
M0171196 IBOGOMKK_00001 743 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -80G>C None
M0171197 IBOGOMKK_00001 754 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -91G>A None
M0171198 IBOGOMKK_00001 758 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -95C>T None
M0171199 IBOGOMKK_00001 760 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -97A>C None
M0171200 IBOGOMKK_00001 761 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -98A>G None
M0171201 IBOGOMKK_00001 771 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -108G>A None
M0171202 IBOGOMKK_00001 779 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -116A>G None
M0171203 IBOGOMKK_00001 781 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -118T>A None
M0171204 IBOGOMKK_00001 787 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -124G>A None
M0171205 IBOGOMKK_00001 793 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -130T>G None
M0171206 IBOGOMKK_00001 832 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -169C>T None
M0171207 IBOGOMKK_00001 855 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -192G>A None
M0171208 IBOGOMKK_00001 894 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -231C>T None
M0171209 IBOGOMKK_00002 1099 7 Gut 0.54 protein_coding missense_variant MODERATE 153C>A Asn51Lys
M0171210 IBOGOMKK_00002 1187 7 Gut 0.54 protein_coding missense_variant MODERATE 241A>G Ile81Val
M0171211 IBOGOMKK_00001 1279 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -616C>T None
M0171212 IBOGOMKK_00001 1291 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -628A>G None
M0171213 IBOGOMKK_00001 1298 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -635T>A None
M0171214 IBOGOMKK_00001 1313 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -650C>G None
M0171215 IBOGOMKK_00001 1333 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -670A>T None
M0171216 IBOGOMKK_00001 1362 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -699G>T None
M0171217 IBOGOMKK_00001 1416 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -753T>G None
M0171218 IBOGOMKK_00001 1423 7 Gut 0.54 protein_coding upstream_gene_variant MODIFIER -760A>G None
M0171219 IBOGOMKK_00003 1500 7 Gut 0.54 protein_coding missense_variant MODERATE 722A>G Lys241Arg
M0171220 IBOGOMKK_00003 1690 7 Gut 0.54 protein_coding missense_variant MODERATE 532T>C Tyr178His
M0171221 IBOGOMKK_00003 1750 9 Gut 0.69 protein_coding missense_variant MODERATE 472T>G Ser158Ala
M0171222 IBOGOMKK_00003 1939 6 Gut 0.46 protein_coding missense_variant MODERATE 283A>C Ile95Leu
M0171223 IBOGOMKK_00003 2117 6 Gut 0.46 protein_coding missense_variant MODERATE 105G>A Met35Ile
M0171224 IBOGOMKK_00001 2241 5 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -1578C>A None
M0171225 IBOGOMKK_00001 2266 5 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -1603G>T None
M0171226 IBOGOMKK_00001 2381 6 Gut 0.46 protein_coding upstream_gene_variant MODIFIER -1718T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term