Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C687
  Reference Plasmid   NZ_CP047313.1
  Reference Plasmid Size   388915
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0098388 LPAKNJBK_00197 169071 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3989T>A None
M0098389 LPAKNJBK_00202 169103 3 Skin 0.17 protein_coding missense_variant MODERATE 1430G>A Gly477Glu
M0098390 LPAKNJBK_00202 169120 3 Skin 0.17 protein_coding synonymous_variant LOW 1413T>C Ala471Ala
M0098391 LPAKNJBK_00202 169126 3 Skin 0.17 protein_coding synonymous_variant LOW 1407G>T Gly469Gly
M0098392 LPAKNJBK_00202 169142 3 Skin 0.17 protein_coding missense_variant MODERATE 1391T>C Val464Ala
M0098393 LPAKNJBK_00202 169146 3 Skin 0.17 protein_coding missense_variant MODERATE 1387A>C Thr463Pro
M0098394 LPAKNJBK_00202 169147 3 Skin 0.17 protein_coding synonymous_variant LOW 1386T>C Arg462Arg
M0098395 LPAKNJBK_00202 169162 3 Skin 0.17 protein_coding synonymous_variant LOW 1371T>G Leu457Leu
M0098396 LPAKNJBK_00202 169197 3 Skin 0.17 protein_coding missense_variant MODERATE 1336C>T Pro446Ser
M0098397 LPAKNJBK_00202 169198 3 Skin 0.17 protein_coding synonymous_variant LOW 1335C>A Thr445Thr
M0098398 LPAKNJBK_00202 169207 3 Skin 0.17 protein_coding synonymous_variant LOW 1326G>A Leu442Leu
M0098399 LPAKNJBK_00202 169246 3 Skin 0.17 protein_coding synonymous_variant LOW 1287A>G Arg429Arg
M0098400 LPAKNJBK_00202 169271 3 Skin 0.17 protein_coding missense_variant MODERATE 1262A>G Gln421Arg
M0098401 LPAKNJBK_00202 169281 3 Skin 0.17 protein_coding missense_variant MODERATE 1252C>A Gln418Lys
M0098402 LPAKNJBK_00202 169330 3 Skin 0.17 protein_coding synonymous_variant LOW 1203A>G Ser401Ser
M0098403 LPAKNJBK_00202 169366 3 Skin 0.17 protein_coding synonymous_variant LOW 1167T>C Ser389Ser
M0098404 LPAKNJBK_00202 169369 3 Skin 0.17 protein_coding synonymous_variant LOW 1164C>T His388His
M0098405 LPAKNJBK_00202 169375 3 Skin 0.17 protein_coding synonymous_variant LOW 1158C>T Thr386Thr
M0098406 LPAKNJBK_00202 169377 3 Skin 0.17 protein_coding missense_variant MODERATE 1156A>T Thr386Ser
M0098407 LPAKNJBK_00202 169387 3 Skin 0.17 protein_coding synonymous_variant LOW 1146G>C Leu382Leu
M0098408 LPAKNJBK_00202 169393 3 Skin 0.17 protein_coding synonymous_variant LOW 1140G>C Ala380Ala
M0098409 LPAKNJBK_00202 169408 3 Skin 0.17 protein_coding synonymous_variant LOW 1125A>G Arg375Arg
M0098410 LPAKNJBK_00202 169420 3 Skin 0.17 protein_coding synonymous_variant LOW 1113A>T Pro371Pro
M0098411 LPAKNJBK_00202 169423 3 Skin 0.17 protein_coding synonymous_variant LOW 1110A>C Arg370Arg
M0098412 LPAKNJBK_00202 169429 3 Skin 0.17 protein_coding synonymous_variant LOW 1104A>G Glu368Glu
M0098413 LPAKNJBK_00202 169438 3 Skin 0.17 protein_coding synonymous_variant LOW 1095A>G Gly365Gly
M0098414 LPAKNJBK_00202 169477 3 Skin 0.17 protein_coding synonymous_variant LOW 1056A>G Leu352Leu
M0098415 LPAKNJBK_00202 169480 3 Skin 0.17 protein_coding synonymous_variant LOW 1053T>A Ala351Ala
M0098416 LPAKNJBK_00202 169494 3 Skin 0.17 protein_coding missense_variant MODERATE 1039T>G Ser347Ala
M0098417 LPAKNJBK_00202 169527 3 Skin 0.17 protein_coding missense_variant MODERATE 1006A>G Ile336Val
M0098418 LPAKNJBK_00202 169534 3 Skin 0.17 protein_coding synonymous_variant LOW 999C>T Ser333Ser
M0098419 LPAKNJBK_00202 169552 3 Skin 0.17 protein_coding synonymous_variant LOW 981T>G Ala327Ala
M0098420 LPAKNJBK_00202 169561 3 Skin 0.17 protein_coding synonymous_variant LOW 972A>G Ala324Ala
M0098421 LPAKNJBK_00202 169564 3 Skin 0.17 protein_coding synonymous_variant LOW 969T>C Pro323Pro
M0098422 LPAKNJBK_00202 169594 3 Skin 0.17 protein_coding synonymous_variant LOW 939T>A Ala313Ala
M0098423 LPAKNJBK_00202 169597 3 Skin 0.17 protein_coding synonymous_variant LOW 936C>T Phe312Phe
M0098424 LPAKNJBK_00202 169630 3 Skin 0.17 protein_coding synonymous_variant LOW 903C>G Leu301Leu
M0098425 LPAKNJBK_00202 169636 3 Skin 0.17 protein_coding synonymous_variant LOW 897A>C Leu299Leu
M0098426 LPAKNJBK_00202 169647 3 Skin 0.17 protein_coding missense_variant MODERATE 886G>A Glu296Lys
M0098427 LPAKNJBK_00202 169680 3 Skin 0.17 protein_coding synonymous_variant LOW 853C>T Leu285Leu
M0098428 LPAKNJBK_00202 169690 3 Skin 0.17 protein_coding synonymous_variant LOW 843C>T Phe281Phe
M0098429 LPAKNJBK_00202 169705 3 Skin 0.17 protein_coding synonymous_variant LOW 828T>G Leu276Leu
M0098430 LPAKNJBK_00202 169708 3 Skin 0.17 protein_coding synonymous_variant LOW 825C>A Leu275Leu
M0098431 LPAKNJBK_00202 169736 3 Skin 0.17 protein_coding missense_variant MODERATE 797C>G Thr266Ser
M0098432 LPAKNJBK_00202 169741 3 Skin 0.17 protein_coding synonymous_variant LOW 792T>C Tyr264Tyr
M0098433 LPAKNJBK_00202 169744 3 Skin 0.17 protein_coding synonymous_variant LOW 789A>G Pro263Pro
M0098434 LPAKNJBK_00202 169750 3 Skin 0.17 protein_coding synonymous_variant LOW 783A>C Ala261Ala
M0098435 LPAKNJBK_00202 169762 3 Skin 0.17 protein_coding synonymous_variant LOW 771C>T Gly257Gly
M0098436 LPAKNJBK_00202 169768 3 Skin 0.17 protein_coding synonymous_variant LOW 765G>C Leu255Leu
M0098437 LPAKNJBK_00202 169774 3 Skin 0.17 protein_coding synonymous_variant LOW 759C>G Gly253Gly
M0098438 LPAKNJBK_00202 169777 3 Skin 0.17 protein_coding synonymous_variant LOW 756G>A Ala252Ala
M0098439 LPAKNJBK_00202 169870 4 Skin 0.22 protein_coding synonymous_variant LOW 663T>A Pro221Pro
M0098440 LPAKNJBK_00202 169891 4 Skin 0.22 protein_coding synonymous_variant LOW 642T>C Leu214Leu
M0098441 LPAKNJBK_00202 169894 4 Skin 0.22 protein_coding synonymous_variant LOW 639G>A Val213Val
M0098442 LPAKNJBK_00202 169906 4 Skin 0.22 protein_coding synonymous_variant LOW 627C>T Ile209Ile
M0098443 LPAKNJBK_00202 169919 4 Skin 0.22 protein_coding missense_variant MODERATE 614A>G Lys205Arg
M0098444 LPAKNJBK_00202 170155 4 Skin 0.22 protein_coding synonymous_variant LOW 378C>A Thr126Thr
M0098445 LPAKNJBK_00202 170170 4 Skin 0.22 protein_coding synonymous_variant LOW 363C>T Ile121Ile
M0098446 LPAKNJBK_00202 170188 4 Skin 0.22 protein_coding synonymous_variant LOW 345A>C Gly115Gly
M0098447 LPAKNJBK_00202 170247 4 Skin 0.22 protein_coding synonymous_variant LOW 286T>C Leu96Leu
M0098448 LPAKNJBK_00202 170251 4 Skin 0.22 protein_coding synonymous_variant LOW 282G>C Leu94Leu
M0098449 LPAKNJBK_00202 170269 4 Skin 0.22 protein_coding synonymous_variant LOW 264T>C Arg88Arg
M0098450 LPAKNJBK_00202 170290 4 Skin 0.22 protein_coding synonymous_variant LOW 243T>C Gly81Gly
M0098451 LPAKNJBK_00202 170331 4 Skin 0.22 protein_coding synonymous_variant LOW 202C>T Leu68Leu
M0098452 LPAKNJBK_00202 170335 4 Skin 0.22 protein_coding synonymous_variant LOW 198A>T Pro66Pro
M0098453 LPAKNJBK_00202 170362 4 Skin 0.22 protein_coding synonymous_variant LOW 171T>C Asp57Asp
M0098454 LPAKNJBK_00202 170371 4 Skin 0.22 protein_coding synonymous_variant LOW 162T>C Pro54Pro
M0098455 LPAKNJBK_00202 170422 4 Skin 0.22 protein_coding synonymous_variant LOW 111C>T Arg37Arg
M0098456 LPAKNJBK_00202 170425 4 Skin 0.22 protein_coding synonymous_variant LOW 108T>C Ala36Ala
M0098457 LPAKNJBK_00202 170431 4 Skin 0.22 protein_coding synonymous_variant LOW 102G>T Ser34Ser
M0098458 LPAKNJBK_00202 170445 4 Skin 0.22 protein_coding synonymous_variant LOW 88T>C Leu30Leu
M0098459 LPAKNJBK_00202 170446 4 Skin 0.22 protein_coding synonymous_variant LOW 87A>G Pro29Pro
M0098460 LPAKNJBK_00202 170481 4 Skin 0.22 protein_coding synonymous_variant LOW 52C>T Leu18Leu
M0098461 LPAKNJBK_00202 170482 4 Skin 0.22 protein_coding synonymous_variant LOW 51A>T Ile17Ile
M0098462 LPAKNJBK_00202 170525 4 Skin 0.22 protein_coding missense_variant MODERATE 8G>A Ser3Asn
M0098463 LPAKNJBK_00203 170574 4 Skin 0.22 protein_coding synonymous_variant LOW 936A>C Pro312Pro
M0098464 LPAKNJBK_00203 170580 4 Skin 0.22 protein_coding synonymous_variant LOW 930G>A Ala310Ala
M0098465 LPAKNJBK_00203 170587 4 Skin 0.22 protein_coding missense_variant MODERATE 923G>A Ser308Asn
M0098466 LPAKNJBK_00203 170592 4 Skin 0.22 protein_coding synonymous_variant LOW 918T>C His306His
M0098467 LPAKNJBK_00203 170643 4 Skin 0.22 protein_coding synonymous_variant LOW 867T>G Leu289Leu
M0098468 LPAKNJBK_00203 170699 4 Skin 0.22 protein_coding missense_variant MODERATE 811C>A Leu271Ile
M0098469 LPAKNJBK_00203 170724 4 Skin 0.22 protein_coding synonymous_variant LOW 786T>A Ala262Ala
M0098470 LPAKNJBK_00203 170730 4 Skin 0.22 protein_coding synonymous_variant LOW 780C>T Leu260Leu
M0098471 LPAKNJBK_00203 170769 4 Skin 0.22 protein_coding synonymous_variant LOW 741A>T Gly247Gly
M0098472 LPAKNJBK_00203 170790 3 Skin 0.17 protein_coding synonymous_variant LOW 720C>T Ile240Ile
M0098473 LPAKNJBK_00203 170799 3 Skin 0.17 protein_coding synonymous_variant LOW 711G>A Pro237Pro
M0098474 LPAKNJBK_00203 170823 3 Skin 0.17 protein_coding synonymous_variant LOW 687T>C Ser229Ser
M0098475 LPAKNJBK_00203 170837 3 Skin 0.17 protein_coding synonymous_variant LOW 673T>C Leu225Leu
M0098476 LPAKNJBK_00203 170862 3 Skin 0.17 protein_coding synonymous_variant LOW 648G>A Lys216Lys
M0098477 LPAKNJBK_00203 170871 3 Skin 0.17 protein_coding synonymous_variant LOW 639A>G Gly213Gly
M0098478 LPAKNJBK_00203 170889 3 Skin 0.17 protein_coding synonymous_variant LOW 621T>C Arg207Arg
M0098479 LPAKNJBK_00203 170901 3 Skin 0.17 protein_coding synonymous_variant LOW 609A>G Leu203Leu
M0098480 LPAKNJBK_00203 170931 3 Skin 0.17 protein_coding synonymous_variant LOW 579T>C Ile193Ile
M0098481 LPAKNJBK_00203 170958 3 Skin 0.17 protein_coding synonymous_variant LOW 552G>A Glu184Glu
M0098482 LPAKNJBK_00203 170961 3 Skin 0.17 protein_coding synonymous_variant LOW 549C>T Asp183Asp
M0098483 LPAKNJBK_00203 170967 3 Skin 0.17 protein_coding synonymous_variant LOW 543G>C Ala181Ala
M0098484 LPAKNJBK_00203 170976 3 Skin 0.17 protein_coding synonymous_variant LOW 534A>C Ala178Ala
M0098485 LPAKNJBK_00203 170988 3 Skin 0.17 protein_coding synonymous_variant LOW 522T>G Ala174Ala
M0098486 LPAKNJBK_00203 170994 3 Skin 0.17 protein_coding synonymous_variant LOW 516A>G Gly172Gly
M0098487 LPAKNJBK_00203 171012 3 Skin 0.17 protein_coding synonymous_variant LOW 498T>C Ser166Ser
M0098488 LPAKNJBK_00203 171023 3 Skin 0.17 protein_coding missense_variant MODERATE 487A>G Thr163Ala
M0098489 LPAKNJBK_00203 171051 3 Skin 0.17 protein_coding missense_variant MODERATE 459T>G His153Gln
M0098490 LPAKNJBK_00203 171069 3 Skin 0.17 protein_coding synonymous_variant LOW 441A>T Ala147Ala
M0098491 LPAKNJBK_00203 171090 3 Skin 0.17 protein_coding synonymous_variant LOW 420T>C Phe140Phe
M0098492 LPAKNJBK_00203 171117 3 Skin 0.17 protein_coding synonymous_variant LOW 393T>C Arg131Arg
M0098493 LPAKNJBK_00203 171186 3 Skin 0.17 protein_coding synonymous_variant LOW 324C>T Asp108Asp
M0098494 LPAKNJBK_00203 171282 3 Skin 0.17 protein_coding synonymous_variant LOW 228T>C Ser76Ser
M0098495 LPAKNJBK_00203 171289 3 Skin 0.17 protein_coding missense_variant MODERATE 221A>G Tyr74Cys
M0098496 LPAKNJBK_00203 171342 3 Skin 0.17 protein_coding missense_variant MODERATE 168A>T Lys56Asn
M0098497 LPAKNJBK_00203 171383 3 Skin 0.17 protein_coding missense_variant MODERATE 127T>C Ser43Pro
M0098498 LPAKNJBK_00203 171387 3 Skin 0.17 protein_coding synonymous_variant LOW 123A>C Arg41Arg
M0098499 LPAKNJBK_00203 171408 3 Skin 0.17 protein_coding synonymous_variant LOW 102C>A Arg34Arg
M0098500 LPAKNJBK_00203 171443 3 Skin 0.17 protein_coding missense_variant MODERATE 67G>C Glu23Gln
M0098501 LPAKNJBK_00203 171459 3 Skin 0.17 protein_coding synonymous_variant LOW 51T>C Ile17Ile
M0098502 LPAKNJBK_00203 171471 3 Skin 0.17 protein_coding synonymous_variant LOW 39G>C Pro13Pro
M0098503 LPAKNJBK_00204 171573 3 Skin 0.17 protein_coding missense_variant MODERATE 322A>G Ile108Val
M0098504 LPAKNJBK_00204 171586 3 Skin 0.17 protein_coding synonymous_variant LOW 309T>G Pro103Pro
M0098505 LPAKNJBK_00204 171612 3 Skin 0.17 protein_coding missense_variant MODERATE 283G>T Val95Phe
M0098506 LPAKNJBK_00204 171645 3 Skin 0.17 protein_coding missense_variant MODERATE 250G>A Ala84Thr
M0098507 LPAKNJBK_00204 171650 3 Skin 0.17 protein_coding missense_variant MODERATE 245T>C Val82Ala
M0098508 LPAKNJBK_00204 171714 3 Skin 0.17 protein_coding synonymous_variant LOW 181C>A Arg61Arg
M0098509 LPAKNJBK_00204 171724 3 Skin 0.17 protein_coding synonymous_variant LOW 171T>C Phe57Phe
M0098510 LPAKNJBK_00204 171730 3 Skin 0.17 protein_coding synonymous_variant LOW 165A>G Ala55Ala
M0098511 LPAKNJBK_00204 171733 3 Skin 0.17 protein_coding synonymous_variant LOW 162T>C Ile54Ile
M0098512 LPAKNJBK_00204 171736 3 Skin 0.17 protein_coding synonymous_variant LOW 159C>A Ala53Ala
M0098513 LPAKNJBK_00204 171739 3 Skin 0.17 protein_coding synonymous_variant LOW 156A>C Gly52Gly
M0098514 LPAKNJBK_00204 171769 3 Skin 0.17 protein_coding synonymous_variant LOW 126G>A Leu42Leu
M0098515 LPAKNJBK_00204 171779 3 Skin 0.17 protein_coding missense_variant MODERATE 116C>T Ala39Val
M0098516 LPAKNJBK_00204 171784 3 Skin 0.17 protein_coding synonymous_variant LOW 111G>A Glu37Glu
M0098517 LPAKNJBK_00204 171801 3 Skin 0.17 protein_coding missense_variant MODERATE 94G>T Val32Leu
M0098518 LPAKNJBK_00204 171802 3 Skin 0.17 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0098519 LPAKNJBK_00204 171822 3 Skin 0.17 protein_coding missense_variant MODERATE 73T>G Phe25Val
M0098520 LPAKNJBK_00204 171844 3 Skin 0.17 protein_coding synonymous_variant LOW 51A>G Gly17Gly
M0098521 LPAKNJBK_00207 173111 6 Skin 0.33 protein_coding synonymous_variant LOW 1848C>T Asn616Asn
M0098522 LPAKNJBK_00207 173118 6 Skin 0.33 protein_coding missense_variant MODERATE 1841G>A Arg614His
M0098523 LPAKNJBK_00207 173207 6 Skin 0.33 protein_coding synonymous_variant LOW 1752T>G Leu584Leu
M0098524 LPAKNJBK_00207 173213 6 Skin 0.33 protein_coding synonymous_variant LOW 1746C>T Val582Val
M0098525 LPAKNJBK_00207 173216 6 Skin 0.33 protein_coding synonymous_variant LOW 1743C>T Asp581Asp
M0098526 LPAKNJBK_00207 173225 6 Skin 0.33 protein_coding synonymous_variant LOW 1734C>T Ala578Ala
M0098527 LPAKNJBK_00207 173228 6 Skin 0.33 protein_coding synonymous_variant LOW 1731A>T Ala577Ala
M0098528 LPAKNJBK_00207 173231 6 Skin 0.33 protein_coding synonymous_variant LOW 1728A>G Gly576Gly
M0098529 LPAKNJBK_00207 173243 6 Skin 0.33 protein_coding synonymous_variant LOW 1716C>T Gly572Gly
M0098530 LPAKNJBK_00207 173256 6 Skin 0.33 protein_coding missense_variant MODERATE 1703A>G Asn568Ser
M0098531 LPAKNJBK_00207 173279 6 Skin 0.33 protein_coding synonymous_variant LOW 1680G>C Val560Val
M0098532 LPAKNJBK_00207 173324 6 Skin 0.33 protein_coding synonymous_variant LOW 1635G>A Lys545Lys
M0098533 LPAKNJBK_00207 173369 6 Skin 0.33 protein_coding synonymous_variant LOW 1590G>A Glu530Glu
M0098534 LPAKNJBK_00207 173396 6 Skin 0.33 protein_coding synonymous_variant LOW 1563C>T Ala521Ala
M0098535 LPAKNJBK_00207 173405 6 Skin 0.33 protein_coding synonymous_variant LOW 1554C>T Val518Val
M0098536 LPAKNJBK_00207 173412 6 Skin 0.33 protein_coding missense_variant MODERATE 1547G>A Ser516Asn
M0098537 LPAKNJBK_00207 173441 6 Skin 0.33 protein_coding missense_variant MODERATE 1518C>A Asp506Glu
M0098538 LPAKNJBK_00207 173504 6 Skin 0.33 protein_coding synonymous_variant LOW 1455T>A Leu485Leu
M0098539 LPAKNJBK_00207 173537 6 Skin 0.33 protein_coding synonymous_variant LOW 1422A>G Arg474Arg
M0098540 LPAKNJBK_00207 173552 6 Skin 0.33 protein_coding synonymous_variant LOW 1407A>C Thr469Thr
M0098541 LPAKNJBK_00207 173555 6 Skin 0.33 protein_coding synonymous_variant LOW 1404C>T Arg468Arg
M0098542 LPAKNJBK_00207 173561 6 Skin 0.33 protein_coding synonymous_variant LOW 1398G>A Ser466Ser
M0098543 LPAKNJBK_00207 173574 6 Skin 0.33 protein_coding missense_variant MODERATE 1385T>G Leu462Arg
M0098544 LPAKNJBK_00207 173636 6 Skin 0.33 protein_coding synonymous_variant LOW 1323A>C Val441Val
M0098545 LPAKNJBK_00207 173661 6 Skin 0.33 protein_coding missense_variant MODERATE 1298A>G Lys433Arg
M0098546 LPAKNJBK_00207 173662 6 Skin 0.33 protein_coding missense_variant MODERATE 1297A>G Lys433Glu
M0098547 LPAKNJBK_00207 173686 6 Skin 0.33 protein_coding missense_variant MODERATE 1273T>C Cys425Arg
M0098548 LPAKNJBK_00207 173699 6 Skin 0.33 protein_coding synonymous_variant LOW 1260T>C Ser420Ser
M0098549 LPAKNJBK_00207 173728 6 Skin 0.33 protein_coding synonymous_variant LOW 1231A>C Arg411Arg
M0098550 LPAKNJBK_00207 173750 6 Skin 0.33 protein_coding synonymous_variant LOW 1209T>C Asp403Asp
M0098551 LPAKNJBK_00207 173777 6 Skin 0.33 protein_coding synonymous_variant LOW 1182C>T His394His
M0098552 LPAKNJBK_00207 173816 6 Skin 0.33 protein_coding synonymous_variant LOW 1143A>G Leu381Leu
M0098553 LPAKNJBK_00207 173824 6 Skin 0.33 protein_coding missense_variant MODERATE 1135C>G Gln379Glu
M0098554 LPAKNJBK_00207 173825 6 Skin 0.33 protein_coding synonymous_variant LOW 1134T>C Ile378Ile
M0098555 LPAKNJBK_00207 173828 6 Skin 0.33 protein_coding synonymous_variant LOW 1131A>G Gln377Gln
M0098556 LPAKNJBK_00207 173834 6 Skin 0.33 protein_coding synonymous_variant LOW 1125T>C Gly375Gly
M0098557 LPAKNJBK_00207 173842 6 Skin 0.33 protein_coding missense_variant MODERATE 1117G>A Val373Ile
M0098558 LPAKNJBK_00207 173843 6 Skin 0.33 protein_coding synonymous_variant LOW 1116G>C Pro372Pro
M0098559 LPAKNJBK_00207 173848 6 Skin 0.33 protein_coding missense_variant MODERATE 1111G>A Val371Ile
M0098560 LPAKNJBK_00207 173882 6 Skin 0.33 protein_coding synonymous_variant LOW 1077G>C Thr359Thr
M0098561 LPAKNJBK_00207 174245 7 Skin 0.39 protein_coding synonymous_variant LOW 714A>C Thr238Thr
M0098562 LPAKNJBK_00202 175510 7 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -4978G>A None
M0098563 LPAKNJBK_00209 176367 8 Skin 0.44 protein_coding synonymous_variant LOW 2442T>C Ala814Ala
M0098564 LPAKNJBK_00209 176376 8 Skin 0.44 protein_coding synonymous_variant LOW 2433G>C Ser811Ser
M0098565 LPAKNJBK_00209 176391 8 Skin 0.44 protein_coding synonymous_variant LOW 2418T>C Gly806Gly
M0098566 LPAKNJBK_00209 176400 8 Skin 0.44 protein_coding synonymous_variant LOW 2409C>T Asn803Asn
M0098567 LPAKNJBK_00209 176412 8 Skin 0.44 protein_coding synonymous_variant LOW 2397T>A Ala799Ala
M0098568 LPAKNJBK_00209 176427 8 Skin 0.44 protein_coding synonymous_variant LOW 2382G>A Val794Val
M0098569 LPAKNJBK_00209 176433 8 Skin 0.44 protein_coding synonymous_variant LOW 2376T>C Ile792Ile
M0098570 LPAKNJBK_00209 176442 8 Skin 0.44 protein_coding synonymous_variant LOW 2367T>C Ser789Ser
M0098571 LPAKNJBK_00209 176451 8 Skin 0.44 protein_coding synonymous_variant LOW 2358G>T Gly786Gly
M0098572 LPAKNJBK_00209 176478 8 Skin 0.44 protein_coding synonymous_variant LOW 2331T>A Pro777Pro
M0098573 LPAKNJBK_00209 176481 8 Skin 0.44 protein_coding synonymous_variant LOW 2328G>A Leu776Leu
M0098574 LPAKNJBK_00209 176487 8 Skin 0.44 protein_coding synonymous_variant LOW 2322G>A Val774Val
M0098575 LPAKNJBK_00209 176535 8 Skin 0.44 protein_coding synonymous_variant LOW 2274C>T Arg758Arg
M0098576 LPAKNJBK_00209 176538 8 Skin 0.44 protein_coding synonymous_variant LOW 2271T>C Gly757Gly
M0098577 LPAKNJBK_00209 178452 5 Skin 0.28 protein_coding synonymous_variant LOW 357A>G Glu119Glu
M0098578 LPAKNJBK_00209 181557 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2749G>A None
M0098579 LPAKNJBK_00209 181566 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2758A>T None
M0098580 LPAKNJBK_00209 181568 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2760A>G None
M0098581 LPAKNJBK_00209 181569 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2761G>A None
M0098582 LPAKNJBK_00209 181570 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2762G>A None
M0098583 LPAKNJBK_00209 181582 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2774T>A None
M0098584 LPAKNJBK_00209 181598 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2790T>G None
M0098585 LPAKNJBK_00209 181619 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2811A>T None
M0098586 LPAKNJBK_00209 181630 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2822C>T None
M0098587 LPAKNJBK_00209 181657 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2849G>C None
M0098588 LPAKNJBK_00209 181663 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2855G>A None
M0098589 LPAKNJBK_00209 181690 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2882A>C None
M0098590 LPAKNJBK_00209 181702 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2894G>A None
M0098591 LPAKNJBK_00209 181756 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2948A>C None
M0098592 LPAKNJBK_00209 181768 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2960A>G None
M0098593 LPAKNJBK_00212 181898 4 Skin 0.22 protein_coding synonymous_variant LOW 72G>A Gln24Gln
M0098594 LPAKNJBK_00212 181901 4 Skin 0.22 protein_coding synonymous_variant LOW 75A>T Ala25Ala
M0098595 LPAKNJBK_00212 181947 4 Skin 0.22 protein_coding synonymous_variant LOW 121C>T Leu41Leu
M0098596 LPAKNJBK_00212 181991 4 Skin 0.22 protein_coding synonymous_variant LOW 165T>C Thr55Thr
M0098597 LPAKNJBK_00212 182003 4 Skin 0.22 protein_coding synonymous_variant LOW 177T>C Tyr59Tyr
M0098598 LPAKNJBK_00212 182021 4 Skin 0.22 protein_coding synonymous_variant LOW 195C>T Asn65Asn
M0098599 LPAKNJBK_00212 182024 4 Skin 0.22 protein_coding synonymous_variant LOW 198C>G Thr66Thr
M0098600 LPAKNJBK_00212 182075 4 Skin 0.22 protein_coding synonymous_variant LOW 249T>C Ser83Ser
M0098601 LPAKNJBK_00212 182087 4 Skin 0.22 protein_coding synonymous_variant LOW 261G>A Gln87Gln
M0098602 LPAKNJBK_00212 182090 4 Skin 0.22 protein_coding synonymous_variant LOW 264A>T Gly88Gly
M0098603 LPAKNJBK_00212 182093 4 Skin 0.22 protein_coding synonymous_variant LOW 267A>C Thr89Thr
M0098604 LPAKNJBK_00212 182117 4 Skin 0.22 protein_coding synonymous_variant LOW 291C>T Phe97Phe
M0098605 LPAKNJBK_00212 182186 4 Skin 0.22 protein_coding synonymous_variant LOW 360A>G Leu120Leu
M0098606 LPAKNJBK_00212 182204 4 Skin 0.22 protein_coding synonymous_variant LOW 378C>T Gly126Gly
M0098607 LPAKNJBK_00212 182276 4 Skin 0.22 protein_coding synonymous_variant LOW 450A>G Val150Val
M0098608 LPAKNJBK_00212 182285 4 Skin 0.22 protein_coding synonymous_variant LOW 459T>C Val153Val
M0098609 LPAKNJBK_00212 182297 4 Skin 0.22 protein_coding synonymous_variant LOW 471T>C Thr157Thr
M0098610 LPAKNJBK_00212 182306 4 Skin 0.22 protein_coding synonymous_variant LOW 480T>C Val160Val
M0098611 LPAKNJBK_00212 182312 4 Skin 0.22 protein_coding synonymous_variant LOW 486C>G Ser162Ser
M0098612 LPAKNJBK_00212 182315 4 Skin 0.22 protein_coding synonymous_variant LOW 489C>T Gly163Gly
M0098613 LPAKNJBK_00212 182336 4 Skin 0.22 protein_coding synonymous_variant LOW 510A>G Glu170Glu
M0098614 LPAKNJBK_00212 182339 4 Skin 0.22 protein_coding synonymous_variant LOW 513C>T Ser171Ser
M0098615 LPAKNJBK_00212 182348 4 Skin 0.22 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0098616 LPAKNJBK_00212 182375 4 Skin 0.22 protein_coding synonymous_variant LOW 549A>G Gln183Gln
M0098617 LPAKNJBK_00212 182381 4 Skin 0.22 protein_coding synonymous_variant LOW 555C>T Leu185Leu
M0098618 LPAKNJBK_00212 182387 4 Skin 0.22 protein_coding synonymous_variant LOW 561G>C Leu187Leu
M0098619 LPAKNJBK_00212 182421 4 Skin 0.22 protein_coding missense_variant MODERATE 595C>G Leu199Val
M0098620 LPAKNJBK_00212 182585 4 Skin 0.22 protein_coding synonymous_variant LOW 759C>A Thr253Thr
M0098621 LPAKNJBK_00212 182711 4 Skin 0.22 protein_coding synonymous_variant LOW 885C>T Gly295Gly
M0098622 LPAKNJBK_00212 182729 4 Skin 0.22 protein_coding synonymous_variant LOW 903T>C His301His
M0098623 LPAKNJBK_00212 182735 4 Skin 0.22 protein_coding synonymous_variant LOW 909A>G Leu303Leu
M0098624 LPAKNJBK_00212 182747 4 Skin 0.22 protein_coding synonymous_variant LOW 921C>T His307His
M0098625 LPAKNJBK_00212 182774 4 Skin 0.22 protein_coding synonymous_variant LOW 948T>C Phe316Phe
M0098626 LPAKNJBK_00212 182918 4 Skin 0.22 protein_coding synonymous_variant LOW 1092C>G Thr364Thr
M0098627 LPAKNJBK_00212 182939 4 Skin 0.22 protein_coding synonymous_variant LOW 1113C>T Gly371Gly
M0098628 LPAKNJBK_00212 182978 4 Skin 0.22 protein_coding synonymous_variant LOW 1152T>C Thr384Thr
M0098629 LPAKNJBK_00212 182981 4 Skin 0.22 protein_coding synonymous_variant LOW 1155T>C Asp385Asp
M0098630 LPAKNJBK_00212 183059 4 Skin 0.22 protein_coding synonymous_variant LOW 1233A>G Pro411Pro
M0098631 LPAKNJBK_00212 183098 4 Skin 0.22 protein_coding synonymous_variant LOW 1272A>G Thr424Thr
M0098632 LPAKNJBK_00212 183110 4 Skin 0.22 protein_coding synonymous_variant LOW 1284A>T Ala428Ala
M0098633 LPAKNJBK_00212 183134 4 Skin 0.22 protein_coding synonymous_variant LOW 1308C>T Thr436Thr
M0098634 LPAKNJBK_00212 183140 4 Skin 0.22 protein_coding synonymous_variant LOW 1314G>A Val438Val
M0098635 LPAKNJBK_00212 183146 4 Skin 0.22 protein_coding synonymous_variant LOW 1320T>C Ile440Ile
M0098636 LPAKNJBK_00209 183183 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4375T>C None
M0098637 LPAKNJBK_00209 183192 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4384A>G None
M0098638 LPAKNJBK_00209 183197 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4389T>C None
M0098639 LPAKNJBK_00209 183198 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4390T>C None
M0098640 LPAKNJBK_00209 183200 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4392A>C None
M0098641 LPAKNJBK_00209 183207 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4399T>C None
M0098642 LPAKNJBK_00209 183228 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4420T>G None
M0098643 LPAKNJBK_00209 183302 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4494T>C None
M0098644 LPAKNJBK_00209 183316 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4508G>A None
M0098645 LPAKNJBK_00209 183318 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4510T>C None
M0098646 LPAKNJBK_00209 183337 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4529A>G None
M0098647 LPAKNJBK_00209 183375 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4567G>A None
M0098648 LPAKNJBK_00209 183376 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4568A>G None
M0098649 LPAKNJBK_00209 183379 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4571G>A None
M0098650 LPAKNJBK_00209 183382 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4574C>T None
M0098651 LPAKNJBK_00213 183724 3 Skin 0.17 protein_coding synonymous_variant LOW 66G>A Glu22Glu
M0098652 LPAKNJBK_00213 183757 3 Skin 0.17 protein_coding synonymous_variant LOW 99C>G Gly33Gly
M0098653 LPAKNJBK_00213 183778 3 Skin 0.17 protein_coding synonymous_variant LOW 120C>T Ala40Ala
M0098654 LPAKNJBK_00213 183793 3 Skin 0.17 protein_coding synonymous_variant LOW 135C>T Tyr45Tyr
M0098655 LPAKNJBK_00213 183805 3 Skin 0.17 protein_coding synonymous_variant LOW 147T>C Ile49Ile
M0098656 LPAKNJBK_00213 183808 3 Skin 0.17 protein_coding synonymous_variant LOW 150C>G Leu50Leu
M0098657 LPAKNJBK_00213 183817 3 Skin 0.17 protein_coding synonymous_variant LOW 159C>T Asn53Asn
M0098658 LPAKNJBK_00213 183820 3 Skin 0.17 protein_coding synonymous_variant LOW 162C>G Leu54Leu
M0098659 LPAKNJBK_00213 183832 3 Skin 0.17 protein_coding synonymous_variant LOW 174T>C Asp58Asp
M0098660 LPAKNJBK_00213 183844 3 Skin 0.17 protein_coding synonymous_variant LOW 186T>C Val62Val
M0098661 LPAKNJBK_00213 183853 3 Skin 0.17 protein_coding synonymous_variant LOW 195A>G Leu65Leu
M0098662 LPAKNJBK_00213 183859 3 Skin 0.17 protein_coding synonymous_variant LOW 201C>T Arg67Arg
M0098663 LPAKNJBK_00213 183862 3 Skin 0.17 protein_coding synonymous_variant LOW 204C>T Arg68Arg
M0098664 LPAKNJBK_00213 183868 3 Skin 0.17 protein_coding synonymous_variant LOW 210T>C Asn70Asn
M0098665 LPAKNJBK_00213 183880 3 Skin 0.17 protein_coding synonymous_variant LOW 222C>T Arg74Arg
M0098666 LPAKNJBK_00215 185361 3 Skin 0.17 protein_coding synonymous_variant LOW 615T>A Ala205Ala
M0098667 LPAKNJBK_00215 185367 3 Skin 0.17 protein_coding synonymous_variant LOW 609G>C Leu203Leu
M0098668 LPAKNJBK_00215 185379 3 Skin 0.17 protein_coding synonymous_variant LOW 597G>A Arg199Arg
M0098669 LPAKNJBK_00215 185394 3 Skin 0.17 protein_coding synonymous_variant LOW 582A>C Ser194Ser
M0098670 LPAKNJBK_00215 185404 3 Skin 0.17 protein_coding missense_variant MODERATE 572A>T Tyr191Phe
M0098671 LPAKNJBK_00215 185430 3 Skin 0.17 protein_coding synonymous_variant LOW 546T>C Asn182Asn
M0098672 LPAKNJBK_00215 185433 3 Skin 0.17 protein_coding synonymous_variant LOW 543G>A Val181Val
M0098673 LPAKNJBK_00215 185465 3 Skin 0.17 protein_coding synonymous_variant LOW 511C>T Leu171Leu
M0098674 LPAKNJBK_00215 185469 3 Skin 0.17 protein_coding synonymous_variant LOW 507C>T Asn169Asn
M0098675 LPAKNJBK_00215 185481 3 Skin 0.17 protein_coding synonymous_variant LOW 495T>C His165His
M0098676 LPAKNJBK_00215 185483 3 Skin 0.17 protein_coding missense_variant MODERATE 493C>T His165Tyr
M0098677 LPAKNJBK_00215 185505 3 Skin 0.17 protein_coding synonymous_variant LOW 471C>A Val157Val
M0098678 LPAKNJBK_00215 185541 3 Skin 0.17 protein_coding synonymous_variant LOW 435G>A Gln145Gln
M0098679 LPAKNJBK_00215 185562 3 Skin 0.17 protein_coding synonymous_variant LOW 414T>C Asp138Asp
M0098680 LPAKNJBK_00215 185585 3 Skin 0.17 protein_coding synonymous_variant LOW 391T>C Leu131Leu
M0098681 LPAKNJBK_00215 185607 3 Skin 0.17 protein_coding synonymous_variant LOW 369T>A Gly123Gly
M0098682 LPAKNJBK_00215 185610 3 Skin 0.17 protein_coding synonymous_variant LOW 366T>G Pro122Pro
M0098683 LPAKNJBK_00215 185649 3 Skin 0.17 protein_coding synonymous_variant LOW 327T>C Tyr109Tyr
M0098684 LPAKNJBK_00215 185676 3 Skin 0.17 protein_coding synonymous_variant LOW 300T>C Ile100Ile
M0098685 LPAKNJBK_00215 185700 3 Skin 0.17 protein_coding synonymous_variant LOW 276C>G Val92Val
M0098686 LPAKNJBK_00215 185747 3 Skin 0.17 protein_coding missense_variant MODERATE 229C>G Gln77Glu
M0098687 LPAKNJBK_00215 185749 3 Skin 0.17 protein_coding missense_variant MODERATE 227G>T Arg76Met
M0098688 LPAKNJBK_00215 185820 3 Skin 0.17 protein_coding synonymous_variant LOW 156A>T Gly52Gly
M0098689 LPAKNJBK_00215 185846 3 Skin 0.17 protein_coding missense_variant MODERATE 130T>G Ser44Ala
M0098690 LPAKNJBK_00215 185906 3 Skin 0.17 protein_coding missense_variant MODERATE 70T>C Tyr24His
M0098691 LPAKNJBK_00215 185916 3 Skin 0.17 protein_coding missense_variant MODERATE 60T>A Phe20Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
LPAKNJBK_00148 Nickel (Ni), Zinc (Zn) 76.6 6.2e-39 12 105 0.8952 0.9895 experiment
LPAKNJBK_00156 Chromium (Cr) 70.2 4.8e-189 12 454 0.9781 0.9738 experiment
LPAKNJBK_00157 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 74.7 1.7e-69 1 150 1.0000 1.0000 experiment
LPAKNJBK_00166 Copper (Cu), Silver (Ag) 74.8 4.6e-289 20 663 0.9713 1.0575 experiment
LPAKNJBK_00168 Copper (Cu) 84 9.6e-106 1 225 1.0000 0.9740 experiment
LPAKNJBK_00177 Copper (Cu), Silver (Ag) 73.2 4.2e-254 1 585 1.0000 0.9606 experiment
LPAKNJBK_00209 Zinc (Zn), Cadmium (Cd) 77.8 0 1 1043 0.9905 0.9924 experiment
LPAKNJBK_00222 Copper (Cu), Silver (Ag) 75 9.9e-289 1 639 1.0000 1.0493 experiment
LPAKNJBK_00232 Copper (Cu) 85.5 9.5e-144 1 311 0.9968 0.9968 experiment
LPAKNJBK_00233 Copper (Cu) 89 2e-60 1 127 1.0000 1.0000 experiment
LPAKNJBK_00234 Copper (Cu) 82 1.8e-215 1 455 0.9848 0.9848 experiment
LPAKNJBK_00235 Copper (Cu) 94.7 7e-120 1 226 0.9869 0.9784 experiment
LPAKNJBK_00273 Cobalt (Co), Nickel (Ni) 71 9.1e-161 1 433 1.0000 1.0046 experiment
LPAKNJBK_00278 Nickel (Ni), Zinc (Zn) 73.9 4.3e-37 10 101 0.9109 0.9684 experiment
LPAKNJBK_00295 Copper (Cu) 85.3 9.3e-109 1 225 1.0000 0.9740 experiment
KGNCHGBM_00148 Nickel (Ni), Zinc (Zn) 76.6 6.2e-39 12 105 0.8952 0.9895 experiment
KGNCHGBM_00156 Chromium (Cr) 70.2 4.8e-189 12 454 0.9781 0.9738 experiment
KGNCHGBM_00157 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 74.7 1.7e-69 1 150 1.0000 1.0000 experiment
KGNCHGBM_00166 Copper (Cu), Silver (Ag) 74.8 4.6e-289 20 663 0.9713 1.0575 experiment
KGNCHGBM_00168 Copper (Cu) 84 9.6e-106 1 225 1.0000 0.9740 experiment
KGNCHGBM_00177 Copper (Cu), Silver (Ag) 73.2 4.2e-254 1 585 1.0000 0.9606 experiment
KGNCHGBM_00209 Zinc (Zn), Cadmium (Cd) 77.8 0 1 1043 0.9905 0.9924 experiment
KGNCHGBM_00222 Copper (Cu), Silver (Ag) 75 9.9e-289 1 639 1.0000 1.0493 experiment
KGNCHGBM_00232 Copper (Cu) 85.5 9.5e-144 1 311 0.9968 0.9968 experiment
KGNCHGBM_00233 Copper (Cu) 89 2e-60 1 127 1.0000 1.0000 experiment
KGNCHGBM_00234 Copper (Cu) 82 1.8e-215 1 455 0.9848 0.9848 experiment
KGNCHGBM_00235 Copper (Cu) 94.7 7e-120 1 226 0.9869 0.9784 experiment
KGNCHGBM_00273 Cobalt (Co), Nickel (Ni) 71 9.1e-161 1 433 1.0000 1.0046 experiment
KGNCHGBM_00278 Nickel (Ni), Zinc (Zn) 73.9 4.3e-37 10 101 0.9109 0.9684 experiment
KGNCHGBM_00295 Copper (Cu) 85.3 9.3e-109 1 225 1.0000 0.9740 experiment
LPAKNJBK_00148 Nickel (Ni), Zinc (Zn) 100 8.8e-55 1 105 1.0000 1.0000 prediction
LPAKNJBK_00154 Nickel (Ni), Cobalt (Co) 97.9 3.8e-227 20 453 0.9581 1.0000 prediction
LPAKNJBK_00155 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 96.3 2e-163 20 313 0.9393 1.0000 prediction
LPAKNJBK_00156 Chromium (Cr) 96.7 3.2e-258 1 456 1.0000 1.0000 prediction
LPAKNJBK_00157 Chromium (Cr) 81.3 6e-73 1 150 1.0000 1.0000 prediction
LPAKNJBK_00164 Copper (Cu) 95.4 2.4e-206 11 381 0.9738 1.0000 prediction
LPAKNJBK_00166 Copper (Cu), Silver (Ag) 98.1 0 20 663 0.9713 1.0126 prediction
LPAKNJBK_00168 Copper (Cu) 99.6 4.7e-122 1 225 1.0000 1.0000 prediction
LPAKNJBK_00169 Copper (Cu) 95.7 3.6e-249 1 468 1.0000 1.0000 prediction
LPAKNJBK_00175 Copper (Cu) 97 5.6e-202 1 354 1.0226 1.0000 prediction
LPAKNJBK_00177 Copper (Cu), Silver (Ag) 94.4 0 1 585 1.0000 0.9155 prediction
LPAKNJBK_00209 Zinc (Zn), Cadmium (Cd) 78.2 0 1 1043 0.9905 0.9924 prediction
LPAKNJBK_00220 Copper (Cu) 79.6 3.1e-168 6 351 1.0313 1.0000 prediction
LPAKNJBK_00222 Copper (Cu), Silver (Ag) 89.6 0 1 639 1.0125 1.0125 prediction
LPAKNJBK_00232 Copper (Cu) 99.7 6.5e-162 1 312 1.0000 1.0000 prediction
LPAKNJBK_00233 Copper (Cu) 99.2 1.6e-63 1 127 1.0000 1.0000 prediction
LPAKNJBK_00234 Copper (Cu) 99.8 3.8e-259 1 462 1.0000 1.0000 prediction
LPAKNJBK_00235 Copper (Cu) 100 3.2e-126 1 229 1.0000 1.0000 prediction
LPAKNJBK_00271 Chromium (Cr) 100 2.8e-262 1 455 1.0000 1.0000 prediction
LPAKNJBK_00272 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 100 7.9e-168 20 313 0.9393 1.0000 prediction
LPAKNJBK_00273 Nickel (Ni), Cobalt (Co) 100 3.8e-229 1 434 1.0000 1.0000 prediction
LPAKNJBK_00278 Nickel (Ni), Zinc (Zn) 100 4.7e-53 1 101 1.0000 1.0000 prediction
LPAKNJBK_00286 Mercury (Hg) 96.7 9.7e-42 1 91 1.0000 1.0000 prediction
LPAKNJBK_00294 Copper (Cu) 100 2.1e-257 1 458 1.0000 1.0000 prediction
LPAKNJBK_00295 Copper (Cu) 99.1 5.6e-123 1 225 1.0000 1.0000 prediction
KGNCHGBM_00148 Nickel (Ni), Zinc (Zn) 100 8.8e-55 1 105 1.0000 1.0000 prediction
KGNCHGBM_00154 Nickel (Ni), Cobalt (Co) 97.9 3.8e-227 20 453 0.9581 1.0000 prediction
KGNCHGBM_00155 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 96.3 2e-163 20 313 0.9393 1.0000 prediction
KGNCHGBM_00156 Chromium (Cr) 96.7 3.2e-258 1 456 1.0000 1.0000 prediction
KGNCHGBM_00157 Chromium (Cr) 81.3 6e-73 1 150 1.0000 1.0000 prediction
KGNCHGBM_00164 Copper (Cu) 95.4 2.4e-206 11 381 0.9738 1.0000 prediction
KGNCHGBM_00166 Copper (Cu), Silver (Ag) 98.1 0 20 663 0.9713 1.0126 prediction
KGNCHGBM_00168 Copper (Cu) 99.6 4.7e-122 1 225 1.0000 1.0000 prediction
KGNCHGBM_00169 Copper (Cu) 95.7 3.6e-249 1 468 1.0000 1.0000 prediction
KGNCHGBM_00175 Copper (Cu) 97 5.6e-202 1 354 1.0226 1.0000 prediction
KGNCHGBM_00177 Copper (Cu), Silver (Ag) 94.4 0 1 585 1.0000 0.9155 prediction
KGNCHGBM_00209 Zinc (Zn), Cadmium (Cd) 78.2 0 1 1043 0.9905 0.9924 prediction
KGNCHGBM_00220 Copper (Cu) 79.6 3.1e-168 6 351 1.0313 1.0000 prediction
KGNCHGBM_00222 Copper (Cu), Silver (Ag) 89.6 0 1 639 1.0125 1.0125 prediction
KGNCHGBM_00232 Copper (Cu) 99.7 6.5e-162 1 312 1.0000 1.0000 prediction
KGNCHGBM_00233 Copper (Cu) 99.2 1.6e-63 1 127 1.0000 1.0000 prediction
KGNCHGBM_00234 Copper (Cu) 99.8 3.8e-259 1 462 1.0000 1.0000 prediction
KGNCHGBM_00235 Copper (Cu) 100 3.2e-126 1 229 1.0000 1.0000 prediction
KGNCHGBM_00271 Chromium (Cr) 100 2.8e-262 1 455 1.0000 1.0000 prediction
KGNCHGBM_00272 Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone] 100 7.9e-168 20 313 0.9393 1.0000 prediction
KGNCHGBM_00273 Nickel (Ni), Cobalt (Co) 100 3.8e-229 1 434 1.0000 1.0000 prediction
KGNCHGBM_00278 Nickel (Ni), Zinc (Zn) 100 4.7e-53 1 101 1.0000 1.0000 prediction
KGNCHGBM_00286 Mercury (Hg) 96.7 9.7e-42 1 91 1.0000 1.0000 prediction
KGNCHGBM_00294 Copper (Cu) 100 2.1e-257 1 458 1.0000 1.0000 prediction
KGNCHGBM_00295 Copper (Cu) 99.1 5.6e-123 1 225 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
LPAKNJBK_00188 PHI:10397 cusR (ABUW_3323) 70.8 2.1e-35 3 98 0.9412 0.9912 moths nosocomial infection DNA-binding response regulator reduced virulence
LPAKNJBK_00192 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
KGNCHGBM_00188 PHI:10397 cusR (ABUW_3323) 70.8 2.1e-35 3 98 0.9412 0.9912 moths nosocomial infection DNA-binding response regulator reduced virulence
KGNCHGBM_00192 PHI:3165 hopA1 80.9 8.2e-141 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LPAKNJBK_00202 UWH26065.1|GT83 100 0 1 484 1 1
LPAKNJBK_00203 QUG93221.1|GT2 100 1.16e-237 1 327 1 1
LPAKNJBK_00249 QUG93249.1|GH23 100 4.84e-132 1 185 1 1
KGNCHGBM_00202 UWH26065.1|GT83 100 0 1 484 1 1
KGNCHGBM_00203 QUG93221.1|GT2 100 1.16e-237 1 327 1 1
KGNCHGBM_00249 QUG93249.1|GH23 100 4.84e-132 1 185 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LPAKNJBK_00100 2.A.53.3.1 74.7 8e-205 1 494 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
LPAKNJBK_00156 2.A.51.1.4 73.7 5.1e-198 1 456 1.0000 0.9978 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
LPAKNJBK_00207 3.A.3.6.11 98.3 0 1 663 0.9970 0.9970 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
LPAKNJBK_00209 2.A.6.1.5 100 0 1 1053 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
LPAKNJBK_00271 2.A.51.1.4 73.9 3.4e-194 1 452 0.9934 0.9912 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
KGNCHGBM_00100 2.A.53.3.1 74.7 8e-205 1 494 0.9980 0.9939 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
KGNCHGBM_00156 2.A.51.1.4 73.7 5.1e-198 1 456 1.0000 0.9978 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
KGNCHGBM_00207 3.A.3.6.11 98.3 0 1 663 0.9970 0.9970 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
KGNCHGBM_00209 2.A.6.1.5 100 0 1 1053 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
KGNCHGBM_00271 2.A.51.1.4 73.9 3.4e-194 1 452 0.9934 0.9912 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family