Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C702
  Reference Plasmid   NZ_CP049224.1
  Reference Plasmid Size   94433
  Reference Plasmid GC Content   0.31
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0142633 PDKLAPFP_00063 73035 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -1274A>G None
M0142634 PDKLAPFP_00066 73287 3 Vaginal 0.18 protein_coding synonymous_variant LOW 141T>C Asp47Asp
M0142635 PDKLAPFP_00066 73314 3 Vaginal 0.18 protein_coding synonymous_variant LOW 168A>C Val56Val
M0142636 PDKLAPFP_00066 73407 3 Vaginal 0.18 protein_coding synonymous_variant LOW 261G>T Thr87Thr
M0142637 PDKLAPFP_00066 73620 3 Vaginal 0.18 protein_coding synonymous_variant LOW 474G>A Thr158Thr
M0142638 PDKLAPFP_00067 74405 3 Vaginal 0.18 protein_coding missense_variant MODERATE 272A>C Gln91Pro
M0142639 PDKLAPFP_00074 78652 3 Vaginal 0.18 protein_coding missense_variant MODERATE 55G>A Val19Ile
M0142640 PDKLAPFP_00077 81768 3 Vaginal 0.18 protein_coding synonymous_variant LOW 957T>C Gly319Gly
M0142641 PDKLAPFP_00077 81933 4 Vaginal 0.24 protein_coding synonymous_variant LOW 792C>A Val264Val
M0142642 PDKLAPFP_00077 82505 4 Vaginal 0.24 protein_coding missense_variant MODERATE 220T>G Phe74Val
M0142643 PDKLAPFP_00079 83341 3 Vaginal 0.18 protein_coding missense_variant MODERATE 390T>G Phe130Leu
M0142644 PDKLAPFP_00076 84290 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -3927T>C None
M0142645 PDKLAPFP_00076 84392 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4029C>T None
M0142646 PDKLAPFP_00076 84398 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4035A>C None
M0142647 PDKLAPFP_00076 84488 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4125T>A None
M0142648 PDKLAPFP_00076 84495 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4132C>T None
M0142649 PDKLAPFP_00083 85012 4 Vaginal 0.24 protein_coding synonymous_variant LOW 282A>T Val94Val
M0142650 PDKLAPFP_00083 85117 3 Vaginal 0.18 protein_coding synonymous_variant LOW 387C>T Arg129Arg
M0142651 PDKLAPFP_00083 85181 3 Vaginal 0.18 protein_coding missense_variant MODERATE 451T>C Ser151Pro
M0142652 PDKLAPFP_00077 85379 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2655A>G None
M0142653 PDKLAPFP_00077 85390 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2666T>C None
M0142654 PDKLAPFP_00077 85397 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2673A>G None
M0142655 PDKLAPFP_00077 85405 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2681C>A None
M0142656 PDKLAPFP_00077 85411 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2687T>C None
M0142657 PDKLAPFP_00077 85426 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2702G>A None
M0142658 PDKLAPFP_00077 85470 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2746T>A None
M0142659 PDKLAPFP_00077 85475 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2751C>A None
M0142660 PDKLAPFP_00077 85476 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2752G>T None
M0142661 PDKLAPFP_00077 85484 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2760A>G None
M0142662 PDKLAPFP_00077 85486 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2762T>G None
M0142663 PDKLAPFP_00077 85491 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2767T>G None
M0142664 PDKLAPFP_00077 85510 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2786G>T None
M0142665 PDKLAPFP_00077 85542 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2818T>G None
M0142666 PDKLAPFP_00077 85587 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -2863G>A None
M0142667 PDKLAPFP_00084 85652 3 Vaginal 0.18 protein_coding synonymous_variant LOW 135A>C Pro45Pro
M0142668 PDKLAPFP_00086 86001 3 Vaginal 0.18 protein_coding missense_variant MODERATE 503T>G Leu168Arg
M0142669 PDKLAPFP_00089 88278 3 Vaginal 0.18 protein_coding missense_variant MODERATE 752A>G Lys251Arg
M0142670 PDKLAPFP_00084 89938 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4152T>C None
M0142671 PDKLAPFP_00092 90056 3 Vaginal 0.18 protein_coding synonymous_variant LOW 774G>A Thr258Thr
M0142672 PDKLAPFP_00092 90084 3 Vaginal 0.18 protein_coding missense_variant MODERATE 746T>C Ile249Thr
M0142673 PDKLAPFP_00063 76273 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -4512A>C None
M0142674 PDKLAPFP_00071 76316 3 Vaginal 0.18 protein_coding synonymous_variant LOW 39A>G Ala13Ala
M0142675 PDKLAPFP_00073 77240 3 Vaginal 0.18 protein_coding synonymous_variant LOW 141C>A Thr47Thr
M0142676 PDKLAPFP_00073 77246 3 Vaginal 0.18 protein_coding synonymous_variant LOW 147T>C Tyr49Tyr
M0142677 PDKLAPFP_00023 26870 3 Vaginal 0.18 protein_coding synonymous_variant LOW 3015T>C Val1005Val
M0142678 PDKLAPFP_00023 26881 3 Vaginal 0.18 protein_coding missense_variant MODERATE 3026C>A Thr1009Asn
M0142679 PDKLAPFP_00023 26888 3 Vaginal 0.18 protein_coding synonymous_variant LOW 3033A>C Gly1011Gly
M0142680 PDKLAPFP_00023 26890 3 Vaginal 0.18 protein_coding missense_variant MODERATE 3035A>C Asn1012Thr
M0142681 PDKLAPFP_00023 26935 3 Vaginal 0.18 protein_coding missense_variant MODERATE 3080G>A Arg1027His
M0142682 PDKLAPFP_00023 26941 3 Vaginal 0.18 protein_coding missense_variant MODERATE 3086T>C Val1029Ala
M0142683 PDKLAPFP_00023 26945 3 Vaginal 0.18 protein_coding synonymous_variant LOW 3090C>T Ala1030Ala
M0142684 PDKLAPFP_00026 27857 3 Vaginal 0.18 protein_coding missense_variant MODERATE 58C>T Leu20Phe
M0142685 PDKLAPFP_00026 27946 3 Vaginal 0.18 protein_coding synonymous_variant LOW 147T>G Thr49Thr
M0142686 PDKLAPFP_00027 28063 3 Vaginal 0.18 protein_coding missense_variant MODERATE 16C>T Arg6Cys
M0142687 PDKLAPFP_00027 28064 3 Vaginal 0.18 protein_coding missense_variant MODERATE 17G>T Arg6Leu
M0142688 PDKLAPFP_00027 28182 3 Vaginal 0.18 protein_coding synonymous_variant LOW 135G>A Val45Val
M0142689 PDKLAPFP_00027 28191 3 Vaginal 0.18 protein_coding synonymous_variant LOW 144T>C Phe48Phe
M0142690 PDKLAPFP_00027 28209 3 Vaginal 0.18 protein_coding synonymous_variant LOW 162T>C Ile54Ile
M0142691 PDKLAPFP_00027 28245 3 Vaginal 0.18 protein_coding synonymous_variant LOW 198C>T Ile66Ile
M0142692 PDKLAPFP_00027 28281 3 Vaginal 0.18 protein_coding synonymous_variant LOW 234G>T Leu78Leu
M0142693 PDKLAPFP_00027 28282 3 Vaginal 0.18 protein_coding missense_variant MODERATE 235G>A Val79Ile
M0142694 PDKLAPFP_00027 28284 3 Vaginal 0.18 protein_coding synonymous_variant LOW 237A>T Val79Val
M0142695 PDKLAPFP_00027 28287 3 Vaginal 0.18 protein_coding synonymous_variant LOW 240G>T Gly80Gly
M0142696 PDKLAPFP_00027 28290 3 Vaginal 0.18 protein_coding synonymous_variant LOW 243T>C Ala81Ala
M0142697 PDKLAPFP_00027 28291 3 Vaginal 0.18 protein_coding missense_variant MODERATE 244A>G Ile82Val
M0142698 PDKLAPFP_00027 28293 3 Vaginal 0.18 protein_coding synonymous_variant LOW 246C>T Ile82Ile
M0142699 PDKLAPFP_00027 28297 3 Vaginal 0.18 protein_coding missense_variant MODERATE 250A>G Met84Val
M0142700 PDKLAPFP_00027 28317 3 Vaginal 0.18 protein_coding synonymous_variant LOW 270A>G Leu90Leu
M0142701 PDKLAPFP_00027 28341 3 Vaginal 0.18 protein_coding synonymous_variant LOW 294C>T Ile98Ile
M0142702 PDKLAPFP_00027 28401 3 Vaginal 0.18 protein_coding synonymous_variant LOW 354C>A Ile118Ile
M0142703 PDKLAPFP_00027 28461 3 Vaginal 0.18 protein_coding synonymous_variant LOW 414C>T Ile138Ile
M0142704 PDKLAPFP_00027 28500 3 Vaginal 0.18 protein_coding synonymous_variant LOW 453T>G Thr151Thr
M0142705 PDKLAPFP_00027 28608 3 Vaginal 0.18 protein_coding synonymous_variant LOW 561G>A Leu187Leu
M0142706 PDKLAPFP_00027 28746 3 Vaginal 0.18 protein_coding synonymous_variant LOW 699T>A Gly233Gly
M0142707 PDKLAPFP_00027 28923 3 Vaginal 0.18 protein_coding missense_variant MODERATE 876A>T Glu292Asp
M0142708 PDKLAPFP_00027 28926 3 Vaginal 0.18 protein_coding synonymous_variant LOW 879T>C Pro293Pro
M0142709 PDKLAPFP_00027 29044 3 Vaginal 0.18 protein_coding synonymous_variant LOW 997A>C Arg333Arg
M0142710 PDKLAPFP_00027 29067 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1020T>C Asn340Asn
M0142711 PDKLAPFP_00027 29119 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1072G>A Ala358Thr
M0142712 PDKLAPFP_00027 29217 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1170A>T Ile390Ile
M0142713 PDKLAPFP_00027 29305 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1258A>G Ile420Val
M0142714 PDKLAPFP_00027 29326 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1279C>A Arg427Arg
M0142715 PDKLAPFP_00027 29346 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1299T>C Leu433Leu
M0142716 PDKLAPFP_00027 29370 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1323C>A Asn441Lys
M0142717 PDKLAPFP_00027 29413 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1366G>A Val456Ile
M0142718 PDKLAPFP_00027 29418 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1371C>T Ala457Ala
M0142719 PDKLAPFP_00027 29436 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1389T>C Asp463Asp
M0142720 PDKLAPFP_00027 29478 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1431C>T Ser477Ser
M0142721 PDKLAPFP_00027 29492 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1445T>A Leu482Gln
M0142722 PDKLAPFP_00027 29498 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1451T>A Phe484Tyr
M0142723 PDKLAPFP_00027 29529 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1482G>A Glu494Glu
M0142724 PDKLAPFP_00027 29532 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1485T>G Gly495Gly
M0142725 PDKLAPFP_00027 29558 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1511T>C Val504Ala
M0142726 PDKLAPFP_00027 29559 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1512G>T Val504Val
M0142727 PDKLAPFP_00027 29610 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1563A>G Leu521Leu
M0142728 PDKLAPFP_00027 29625 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1578G>T Gly526Gly
M0142729 PDKLAPFP_00027 29685 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1638T>C Asn546Asn
M0142730 PDKLAPFP_00027 29690 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1643G>A Cys548Tyr
M0142731 PDKLAPFP_00027 29694 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1647T>C Ile549Ile
M0142732 PDKLAPFP_00027 29709 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1662T>G Thr554Thr
M0142733 PDKLAPFP_00027 29910 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1863A>C Ile621Ile
M0142734 PDKLAPFP_00027 30040 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1993T>C Leu665Leu
M0142735 PDKLAPFP_00027 30051 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2004A>G Thr668Thr
M0142736 PDKLAPFP_00027 30063 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2016C>T Ala672Ala
M0142737 PDKLAPFP_00032 35113 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1023A>T Thr341Thr
M0142738 PDKLAPFP_00032 35116 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1020C>T Ile340Ile
M0142739 PDKLAPFP_00032 35685 3 Vaginal 0.18 protein_coding missense_variant MODERATE 451T>C Phe151Leu
M0142740 PDKLAPFP_00032 35848 3 Vaginal 0.18 protein_coding missense_variant MODERATE 288A>C Lys96Asn
M0142741 PDKLAPFP_00032 35850 3 Vaginal 0.18 protein_coding missense_variant MODERATE 286A>C Lys96Gln
M0142742 PDKLAPFP_00032 35921 3 Vaginal 0.18 protein_coding missense_variant MODERATE 215T>A Leu72Gln
M0142743 PDKLAPFP_00032 35995 3 Vaginal 0.18 protein_coding synonymous_variant LOW 141C>T Asn47Asn
M0142744 PDKLAPFP_00035 40534 3 Vaginal 0.18 protein_coding synonymous_variant LOW 325C>A Arg109Arg
M0142745 PDKLAPFP_00035 40541 3 Vaginal 0.18 protein_coding synonymous_variant LOW 318T>C Gly106Gly
M0142746 PDKLAPFP_00035 40568 3 Vaginal 0.18 protein_coding missense_variant MODERATE 291T>G Asp97Glu
M0142747 PDKLAPFP_00035 40579 3 Vaginal 0.18 protein_coding missense_variant MODERATE 280C>A Gln94Lys
M0142748 PDKLAPFP_00035 40592 3 Vaginal 0.18 protein_coding synonymous_variant LOW 267A>G Leu89Leu
M0142749 PDKLAPFP_00035 40603 3 Vaginal 0.18 protein_coding missense_variant MODERATE 256G>A Asp86Asn
M0142750 PDKLAPFP_00035 40605 3 Vaginal 0.18 protein_coding missense_variant MODERATE 254A>C Asn85Thr
M0142751 PDKLAPFP_00035 40608 3 Vaginal 0.18 protein_coding missense_variant MODERATE 251A>G Asn84Ser
M0142752 PDKLAPFP_00035 40618 3 Vaginal 0.18 protein_coding missense_variant MODERATE 241G>A Val81Ile
M0142753 PDKLAPFP_00035 40633 3 Vaginal 0.18 protein_coding missense_variant MODERATE 226A>G Lys76Glu
M0142754 PDKLAPFP_00035 40636 3 Vaginal 0.18 protein_coding missense_variant MODERATE 223A>G Thr75Ala
M0142755 PDKLAPFP_00035 40647 3 Vaginal 0.18 protein_coding missense_variant MODERATE 212G>A Ser71Asn
M0142756 PDKLAPFP_00036 41104 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1086G>A Glu362Glu
M0142757 PDKLAPFP_00036 41671 3 Vaginal 0.18 protein_coding synonymous_variant LOW 519A>G Leu173Leu
M0142758 PDKLAPFP_00036 42007 3 Vaginal 0.18 protein_coding synonymous_variant LOW 183A>C Ile61Ile
M0142759 PDKLAPFP_00036 42028 3 Vaginal 0.18 protein_coding synonymous_variant LOW 162T>C Ile54Ile
M0142760 PDKLAPFP_00036 42040 3 Vaginal 0.18 protein_coding synonymous_variant LOW 150A>G Gly50Gly
M0142761 PDKLAPFP_00036 42123 3 Vaginal 0.18 protein_coding missense_variant MODERATE 67G>A Glu23Lys
M0142762 PDKLAPFP_00036 42124 3 Vaginal 0.18 protein_coding synonymous_variant LOW 66A>T Ile22Ile
M0142763 PDKLAPFP_00036 42145 3 Vaginal 0.18 protein_coding missense_variant MODERATE 45A>C Glu15Asp
M0142764 PDKLAPFP_00036 42157 3 Vaginal 0.18 protein_coding missense_variant MODERATE 33T>A Asn11Lys
M0142765 PDKLAPFP_00035 42221 3 Vaginal 0.18 protein_coding upstream_gene_variant MODIFIER -1363A>T None
M0142766 PDKLAPFP_00037 42356 3 Vaginal 0.18 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0142767 PDKLAPFP_00037 42496 3 Vaginal 0.18 protein_coding synonymous_variant LOW 165G>T Ser55Ser
M0142768 PDKLAPFP_00037 42499 3 Vaginal 0.18 protein_coding synonymous_variant LOW 168G>A Leu56Leu
M0142769 PDKLAPFP_00037 42673 3 Vaginal 0.18 protein_coding synonymous_variant LOW 342T>C Pro114Pro
M0142770 PDKLAPFP_00037 42687 3 Vaginal 0.18 protein_coding missense_variant MODERATE 356A>C Asn119Thr
M0142771 PDKLAPFP_00037 43071 3 Vaginal 0.18 protein_coding missense_variant MODERATE 740A>T Tyr247Phe
M0142772 PDKLAPFP_00037 43072 3 Vaginal 0.18 protein_coding synonymous_variant LOW 741T>C Tyr247Tyr
M0142773 PDKLAPFP_00037 43099 3 Vaginal 0.18 protein_coding synonymous_variant LOW 768T>C Arg256Arg
M0142774 PDKLAPFP_00037 43189 3 Vaginal 0.18 protein_coding synonymous_variant LOW 858G>A Gly286Gly
M0142775 PDKLAPFP_00037 43219 3 Vaginal 0.18 protein_coding synonymous_variant LOW 888A>G Leu296Leu
M0142776 PDKLAPFP_00037 43228 3 Vaginal 0.18 protein_coding synonymous_variant LOW 897A>G Thr299Thr
M0142777 PDKLAPFP_00037 43318 3 Vaginal 0.18 protein_coding synonymous_variant LOW 987G>A Lys329Lys
M0142778 PDKLAPFP_00037 43726 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1395T>C Thr465Thr
M0142779 PDKLAPFP_00037 43761 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1430T>C Ile477Thr
M0142780 PDKLAPFP_00037 43762 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1431T>C Ile477Ile
M0142781 PDKLAPFP_00037 43865 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1534A>C Ile512Leu
M0142782 PDKLAPFP_00037 44410 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2079T>C Ser693Ser
M0142783 PDKLAPFP_00037 44815 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2484G>A Pro828Pro
M0142784 PDKLAPFP_00037 45143 3 Vaginal 0.18 protein_coding stop_gained HIGH 2812G>T Glu938*
M0142785 PDKLAPFP_00037 45144 3 Vaginal 0.18 protein_coding missense_variant MODERATE 2813A>T Glu938Val
M0142786 PDKLAPFP_00037 45223 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2892G>A Ala964Ala
M0142787 PDKLAPFP_00037 45265 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2934A>G Thr978Thr
M0142788 PDKLAPFP_00037 45298 3 Vaginal 0.18 protein_coding synonymous_variant LOW 2967C>T Gly989Gly
M0142789 PDKLAPFP_00039 47920 3 Vaginal 0.18 protein_coding synonymous_variant LOW 798C>T Ile266Ile
M0142790 PDKLAPFP_00039 48148 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1026C>A Ala342Ala
M0142791 PDKLAPFP_00040 48246 3 Vaginal 0.18 protein_coding missense_variant MODERATE 91T>A Ser31Thr
M0142792 PDKLAPFP_00040 48314 3 Vaginal 0.18 protein_coding synonymous_variant LOW 159G>A Arg53Arg
M0142793 PDKLAPFP_00040 48482 3 Vaginal 0.18 protein_coding synonymous_variant LOW 327C>T Phe109Phe
M0142794 PDKLAPFP_00040 48533 3 Vaginal 0.18 protein_coding synonymous_variant LOW 378C>A Thr126Thr
M0142795 PDKLAPFP_00040 48563 3 Vaginal 0.18 protein_coding synonymous_variant LOW 408G>A Lys136Lys
M0142796 PDKLAPFP_00040 48827 3 Vaginal 0.18 protein_coding synonymous_variant LOW 672C>T Val224Val
M0142797 PDKLAPFP_00040 48926 3 Vaginal 0.18 protein_coding synonymous_variant LOW 771T>C Asn257Asn
M0142798 PDKLAPFP_00040 49012 3 Vaginal 0.18 protein_coding missense_variant MODERATE 857C>T Ser286Leu
M0142799 PDKLAPFP_00040 49026 3 Vaginal 0.18 protein_coding missense_variant MODERATE 871G>A Ala291Thr
M0142800 PDKLAPFP_00040 49028 3 Vaginal 0.18 protein_coding synonymous_variant LOW 873T>A Ala291Ala
M0142801 PDKLAPFP_00040 49037 3 Vaginal 0.18 protein_coding missense_variant MODERATE 882T>G Asn294Lys
M0142802 PDKLAPFP_00040 49061 3 Vaginal 0.18 protein_coding synonymous_variant LOW 906T>C Ala302Ala
M0142803 PDKLAPFP_00040 49070 3 Vaginal 0.18 protein_coding synonymous_variant LOW 915T>G Pro305Pro
M0142804 PDKLAPFP_00040 49079 3 Vaginal 0.18 protein_coding synonymous_variant LOW 924C>A Thr308Thr
M0142805 PDKLAPFP_00040 49091 3 Vaginal 0.18 protein_coding synonymous_variant LOW 936A>C Ser312Ser
M0142806 PDKLAPFP_00040 49094 3 Vaginal 0.18 protein_coding synonymous_variant LOW 939T>C Asn313Asn
M0142807 PDKLAPFP_00040 49097 3 Vaginal 0.18 protein_coding synonymous_variant LOW 942A>T Gly314Gly
M0142808 PDKLAPFP_00040 49100 3 Vaginal 0.18 protein_coding synonymous_variant LOW 945A>G Lys315Lys
M0142809 PDKLAPFP_00040 49113 3 Vaginal 0.18 protein_coding synonymous_variant LOW 958C>T Leu320Leu
M0142810 PDKLAPFP_00040 49121 3 Vaginal 0.18 protein_coding synonymous_variant LOW 966G>C Ser322Ser
M0142811 PDKLAPFP_00040 49127 3 Vaginal 0.18 protein_coding synonymous_variant LOW 972G>A Thr324Thr
M0142812 PDKLAPFP_00040 49142 3 Vaginal 0.18 protein_coding synonymous_variant LOW 987G>A Lys329Lys
M0142813 PDKLAPFP_00040 49145 3 Vaginal 0.18 protein_coding synonymous_variant LOW 990A>G Lys330Lys
M0142814 PDKLAPFP_00040 49163 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1008T>C Ser336Ser
M0142815 PDKLAPFP_00040 49266 3 Vaginal 0.18 protein_coding missense_variant MODERATE 1111G>T Val371Phe
M0142816 PDKLAPFP_00040 49268 3 Vaginal 0.18 protein_coding synonymous_variant LOW 1113C>A Val371Val
M0142817 PDKLAPFP_00016 16515 3 Vaginal 0.18 protein_coding synonymous_variant LOW 102G>A Leu34Leu
M0142818 PDKLAPFP_00018 18649 3 Vaginal 0.18 protein_coding missense_variant MODERATE 5C>T Ser2Leu
M0142819 PDKLAPFP_00018 18827 3 Vaginal 0.18 protein_coding synonymous_variant LOW 183A>T Pro61Pro
M0142820 PDKLAPFP_00018 18929 3 Vaginal 0.18 protein_coding synonymous_variant LOW 285C>A Ala95Ala
M0142821 PDKLAPFP_00018 19079 3 Vaginal 0.18 protein_coding synonymous_variant LOW 435A>G Lys145Lys
M0142822 PDKLAPFP_00018 19190 3 Vaginal 0.18 protein_coding synonymous_variant LOW 546C>T His182His
M0142823 PDKLAPFP_00018 19205 3 Vaginal 0.18 protein_coding synonymous_variant LOW 561C>T Ser187Ser
M0142824 PDKLAPFP_00018 19211 3 Vaginal 0.18 protein_coding synonymous_variant LOW 567C>T Ala189Ala
M0142825 PDKLAPFP_00020 20627 3 Vaginal 0.18 protein_coding synonymous_variant LOW 54A>T Ile18Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PDKLAPFP_00063 QIH28326.1|CBM50 100 8.16e-137 1 202 1 1
PDKLAPFP_00083 QIH24483.1|CBM50 98.6 1.14e-149 1 213 1 0.7007
CKLEHGHO_00063 QIH28326.1|CBM50 100 8.16e-137 1 202 1 1
CKLEHGHO_00083 QIH24483.1|CBM50 98.6 1.14e-149 1 213 1 0.7007





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term