Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C714
  Reference Plasmid   NZ_CP050501.1
  Reference Plasmid Size   74628
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0173183 JHPKDHPL_00048 41322 5 Gut 0.63 protein_coding synonymous_variant LOW 111G>A Arg37Arg
M0173184 JHPKDHPL_00048 41326 5 Gut 0.63 protein_coding missense_variant MODERATE 115A>G Lys39Glu
M0173185 JHPKDHPL_00049 41371 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -208A>G None
M0173186 JHPKDHPL_00049 41377 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -202C>T None
M0173187 JHPKDHPL_00049 41382 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -197C>A None
M0173188 JHPKDHPL_00049 41425 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -154T>C None
M0173189 JHPKDHPL_00049 41427 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -152G>A None
M0173190 JHPKDHPL_00049 41447 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -132G>A None
M0173191 JHPKDHPL_00049 41449 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -130T>G None
M0173192 JHPKDHPL_00049 41453 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -126A>C None
M0173193 JHPKDHPL_00049 41461 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -118A>G None
M0173194 JHPKDHPL_00049 41475 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -104A>T None
M0173195 JHPKDHPL_00049 41494 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -85A>G None
M0173196 JHPKDHPL_00049 41508 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -71C>A None
M0173197 JHPKDHPL_00049 41509 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -70C>T None
M0173198 JHPKDHPL_00049 41559 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -20C>T None
M0173199 JHPKDHPL_00049 41588 5 Gut 0.63 protein_coding missense_variant MODERATE 10T>C Ser4Pro
M0173200 JHPKDHPL_00049 41784 6 Gut 0.75 protein_coding missense_variant MODERATE 206T>C Val69Ala
M0173201 JHPKDHPL_00051 42347 6 Gut 0.75 protein_coding synonymous_variant LOW 189G>A Lys63Lys
M0173202 JHPKDHPL_00051 42363 6 Gut 0.75 protein_coding missense_variant MODERATE 205G>C Ala69Pro
M0173203 JHPKDHPL_00051 42476 6 Gut 0.75 protein_coding missense_variant MODERATE 318T>G Asp106Glu
M0173204 JHPKDHPL_00051 42629 6 Gut 0.75 protein_coding missense_variant MODERATE 471A>C Glu157Asp
M0173205 JHPKDHPL_00051 42733 6 Gut 0.75 protein_coding missense_variant MODERATE 575T>C Leu192Pro
M0173206 JHPKDHPL_00051 42770 6 Gut 0.75 protein_coding synonymous_variant LOW 612C>T Thr204Thr
M0173207 JHPKDHPL_00051 42776 6 Gut 0.75 protein_coding synonymous_variant LOW 618T>C Ser206Ser
M0173208 JHPKDHPL_00051 42806 6 Gut 0.75 protein_coding synonymous_variant LOW 648C>T Gly216Gly
M0173209 JHPKDHPL_00051 42809 6 Gut 0.75 protein_coding synonymous_variant LOW 651G>A Gln217Gln
M0173210 JHPKDHPL_00051 42824 6 Gut 0.75 protein_coding synonymous_variant LOW 666G>A Leu222Leu
M0173211 JHPKDHPL_00051 42830 6 Gut 0.75 protein_coding missense_variant MODERATE 672A>C Glu224Asp
M0173212 JHPKDHPL_00051 42852 6 Gut 0.75 protein_coding missense_variant MODERATE 694A>G Lys232Glu
M0173213 JHPKDHPL_00051 43104 6 Gut 0.75 protein_coding missense_variant MODERATE 946A>G Lys316Glu
M0173214 JHPKDHPL_00051 43425 6 Gut 0.75 protein_coding missense_variant MODERATE 1267A>G Lys423Glu
M0173215 JHPKDHPL_00051 43547 6 Gut 0.75 protein_coding synonymous_variant LOW 1389T>C Gly463Gly
M0173216 JHPKDHPL_00051 43552 6 Gut 0.75 protein_coding missense_variant MODERATE 1394C>T Ala465Val
M0173217 JHPKDHPL_00052 44145 6 Gut 0.75 protein_coding missense_variant MODERATE 445T>C Ser149Pro
M0173218 JHPKDHPL_00053 44249 6 Gut 0.75 protein_coding missense_variant MODERATE 73G>A Val25Ile
M0173219 JHPKDHPL_00053 44263 6 Gut 0.75 protein_coding synonymous_variant LOW 87C>T Gly29Gly
M0173220 JHPKDHPL_00053 44384 6 Gut 0.75 protein_coding missense_variant MODERATE 208C>T Pro70Ser
M0173221 JHPKDHPL_00053 44490 6 Gut 0.75 protein_coding missense_variant MODERATE 314A>G Lys105Arg
M0173222 JHPKDHPL_00053 44501 6 Gut 0.75 protein_coding missense_variant MODERATE 325T>C Tyr109His
M0173223 JHPKDHPL_00053 44515 6 Gut 0.75 protein_coding synonymous_variant LOW 339C>T Leu113Leu
M0173224 JHPKDHPL_00053 44610 6 Gut 0.75 protein_coding missense_variant MODERATE 434A>G Lys145Arg
M0173225 JHPKDHPL_00053 45157 6 Gut 0.75 protein_coding synonymous_variant LOW 981G>A Lys327Lys
M0173226 JHPKDHPL_00053 45163 6 Gut 0.75 protein_coding synonymous_variant LOW 987G>A Ala329Ala
M0173227 JHPKDHPL_00053 45247 3 Gut 0.38 protein_coding synonymous_variant LOW 1071C>T Thr357Thr
M0173228 JHPKDHPL_00053 45399 6 Gut 0.75 protein_coding missense_variant MODERATE 1223C>T Ala408Val
M0173229 JHPKDHPL_00053 45409 6 Gut 0.75 protein_coding synonymous_variant LOW 1233G>A Arg411Arg
M0173230 JHPKDHPL_00053 45466 3 Gut 0.38 protein_coding synonymous_variant LOW 1290A>G Pro430Pro
M0173231 JHPKDHPL_00053 45505 3 Gut 0.38 protein_coding synonymous_variant LOW 1329C>T Gly443Gly
M0173232 JHPKDHPL_00053 45514 3 Gut 0.38 protein_coding synonymous_variant LOW 1338T>C Cys446Cys
M0173233 JHPKDHPL_00053 45518 3 Gut 0.38 protein_coding missense_variant MODERATE 1342C>G Pro448Ala
M0173234 JHPKDHPL_00053 45523 3 Gut 0.38 protein_coding synonymous_variant LOW 1347T>C Ile449Ile
M0173235 JHPKDHPL_00053 45547 6 Gut 0.75 protein_coding synonymous_variant LOW 1371G>A Lys457Lys
M0173236 JHPKDHPL_00053 45553 3 Gut 0.38 protein_coding synonymous_variant LOW 1377T>C Arg459Arg
M0173237 JHPKDHPL_00053 45568 6 Gut 0.75 protein_coding synonymous_variant LOW 1392T>C Tyr464Tyr
M0173238 JHPKDHPL_00053 45580 3 Gut 0.38 protein_coding synonymous_variant LOW 1404C>T Leu468Leu
M0173239 JHPKDHPL_00053 45586 3 Gut 0.38 protein_coding synonymous_variant LOW 1410C>T Ala470Ala
M0173240 JHPKDHPL_00053 45589 6 Gut 0.75 protein_coding synonymous_variant LOW 1413C>G Ser471Ser
M0173241 JHPKDHPL_00053 45599 6 Gut 0.75 protein_coding synonymous_variant LOW 1423T>C Leu475Leu
M0173242 JHPKDHPL_00053 45644 3 Gut 0.38 protein_coding missense_variant MODERATE 1468A>C Lys490Gln
M0173243 JHPKDHPL_00053 45676 3 Gut 0.38 protein_coding synonymous_variant LOW 1500G>A Gln500Gln
M0173244 JHPKDHPL_00053 45772 3 Gut 0.38 protein_coding synonymous_variant LOW 1596T>C Ile532Ile
M0173245 JHPKDHPL_00053 45800 3 Gut 0.38 protein_coding missense_variant MODERATE 1624C>A Arg542Ser
M0173246 JHPKDHPL_00053 45802 3 Gut 0.38 protein_coding synonymous_variant LOW 1626C>A Arg542Arg
M0173247 JHPKDHPL_00053 45805 3 Gut 0.38 protein_coding synonymous_variant LOW 1629G>T Gly543Gly
M0173248 JHPKDHPL_00053 45832 3 Gut 0.38 protein_coding synonymous_variant LOW 1656T>C Tyr552Tyr
M0173249 JHPKDHPL_00053 45833 3 Gut 0.38 protein_coding missense_variant MODERATE 1657T>C Ser553Pro
M0173250 JHPKDHPL_00053 45834 3 Gut 0.38 protein_coding stop_gained HIGH 1658C>A Ser553*
M0173251 JHPKDHPL_00053 45844 6 Gut 0.75 protein_coding synonymous_variant LOW 1668G>A Lys556Lys
M0173252 JHPKDHPL_00053 45847 3 Gut 0.38 protein_coding synonymous_variant LOW 1671T>C His557His
M0173253 JHPKDHPL_00053 45856 3 Gut 0.38 protein_coding synonymous_variant LOW 1680C>T Tyr560Tyr
M0173254 JHPKDHPL_00053 45862 3 Gut 0.38 protein_coding synonymous_variant LOW 1686G>A Glu562Glu
M0173255 JHPKDHPL_00053 45904 3 Gut 0.38 protein_coding synonymous_variant LOW 1728C>T Leu576Leu
M0173256 JHPKDHPL_00053 45909 3 Gut 0.38 protein_coding missense_variant MODERATE 1733G>T Ser578Ile
M0173257 JHPKDHPL_00053 45947 6 Gut 0.75 protein_coding missense_variant MODERATE 1771G>T Ala591Ser
M0173258 JHPKDHPL_00053 46018 5 Gut 0.63 protein_coding missense_variant MODERATE 1842C>G Asn614Lys
M0173259 JHPKDHPL_00055 46330 5 Gut 0.63 protein_coding synonymous_variant LOW 9C>T Asn3Asn
M0173260 JHPKDHPL_00055 46351 5 Gut 0.63 protein_coding synonymous_variant LOW 30A>G Lys10Lys
M0173261 JHPKDHPL_00055 46596 5 Gut 0.63 protein_coding missense_variant MODERATE 275C>T Ala92Val
M0173262 JHPKDHPL_00055 46672 3 Gut 0.38 protein_coding synonymous_variant LOW 351G>A Ser117Ser
M0173263 JHPKDHPL_00055 46677 3 Gut 0.38 protein_coding missense_variant MODERATE 356G>A Gly119Asp
M0173264 JHPKDHPL_00055 46710 5 Gut 0.63 protein_coding missense_variant MODERATE 389C>G Ala130Gly
M0173265 JHPKDHPL_00055 46724 5 Gut 0.63 protein_coding missense_variant MODERATE 403A>G Ile135Val
M0173266 JHPKDHPL_00055 46742 5 Gut 0.63 protein_coding missense_variant MODERATE 421T>C Ser141Pro
M0173267 JHPKDHPL_00055 46819 3 Gut 0.38 protein_coding synonymous_variant LOW 498C>T Leu166Leu
M0173268 JHPKDHPL_00055 46870 3 Gut 0.38 protein_coding synonymous_variant LOW 549C>T Tyr183Tyr
M0173269 JHPKDHPL_00055 47011 5 Gut 0.63 protein_coding synonymous_variant LOW 690G>A Pro230Pro
M0173270 JHPKDHPL_00055 47056 5 Gut 0.63 protein_coding synonymous_variant LOW 735A>C Val245Val
M0173271 JHPKDHPL_00055 47065 3 Gut 0.38 protein_coding synonymous_variant LOW 744G>A Leu248Leu
M0173272 JHPKDHPL_00056 47169 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -4G>A None
M0173273 JHPKDHPL_00056 47376 5 Gut 0.63 protein_coding synonymous_variant LOW 204G>A Ala68Ala
M0173274 JHPKDHPL_00056 47451 5 Gut 0.63 protein_coding missense_variant MODERATE 279G>C Lys93Asn
M0173275 JHPKDHPL_00056 47477 3 Gut 0.38 protein_coding missense_variant MODERATE 305A>G Lys102Arg
M0173276 JHPKDHPL_00057 47623 5 Gut 0.63 protein_coding synonymous_variant LOW 132C>T Thr44Thr
M0173277 JHPKDHPL_00057 47767 5 Gut 0.63 protein_coding synonymous_variant LOW 276C>T Tyr92Tyr
M0173278 JHPKDHPL_00057 47770 5 Gut 0.63 protein_coding synonymous_variant LOW 279C>A Ala93Ala
M0173279 JHPKDHPL_00057 47773 5 Gut 0.63 protein_coding synonymous_variant LOW 282A>G Glu94Glu
M0173280 JHPKDHPL_00057 47779 5 Gut 0.63 protein_coding synonymous_variant LOW 288C>T Leu96Leu
M0173281 JHPKDHPL_00057 47782 5 Gut 0.63 protein_coding synonymous_variant LOW 291C>T Asn97Asn
M0173282 JHPKDHPL_00057 47815 5 Gut 0.63 protein_coding synonymous_variant LOW 324T>C Asn108Asn
M0173283 JHPKDHPL_00057 47860 5 Gut 0.63 protein_coding synonymous_variant LOW 369A>G Thr123Thr
M0173284 JHPKDHPL_00057 47887 5 Gut 0.63 protein_coding synonymous_variant LOW 396T>C Leu132Leu
M0173285 JHPKDHPL_00057 47892 5 Gut 0.63 protein_coding missense_variant MODERATE 401G>C Gly134Ala
M0173286 JHPKDHPL_00057 47896 5 Gut 0.63 protein_coding synonymous_variant LOW 405T>C Leu135Leu
M0173287 JHPKDHPL_00057 47953 5 Gut 0.63 protein_coding synonymous_variant LOW 462T>C Leu154Leu
M0173288 JHPKDHPL_00057 47971 5 Gut 0.63 protein_coding synonymous_variant LOW 480G>A Val160Val
M0173289 JHPKDHPL_00057 48031 3 Gut 0.38 protein_coding synonymous_variant LOW 540G>A Gln180Gln
M0173290 JHPKDHPL_00057 48124 3 Gut 0.38 protein_coding synonymous_variant LOW 633G>A Arg211Arg
M0173291 JHPKDHPL_00057 48166 3 Gut 0.38 protein_coding synonymous_variant LOW 675T>C Tyr225Tyr
M0173292 JHPKDHPL_00057 48229 5 Gut 0.63 protein_coding synonymous_variant LOW 738C>T Asn246Asn
M0173293 JHPKDHPL_00057 48631 3 Gut 0.38 protein_coding synonymous_variant LOW 1140C>T Ala380Ala
M0173294 JHPKDHPL_00057 48677 5 Gut 0.63 protein_coding missense_variant MODERATE 1186A>G Lys396Glu
M0173295 JHPKDHPL_00057 48803 3 Gut 0.38 protein_coding synonymous_variant LOW 1312C>T Leu438Leu
M0173296 JHPKDHPL_00057 48829 3 Gut 0.38 protein_coding synonymous_variant LOW 1338T>G Thr446Thr
M0173297 JHPKDHPL_00057 48838 3 Gut 0.38 protein_coding synonymous_variant LOW 1347A>G Leu449Leu
M0173298 JHPKDHPL_00057 48883 3 Gut 0.38 protein_coding synonymous_variant LOW 1392T>C Ile464Ile
M0173299 JHPKDHPL_00057 48889 3 Gut 0.38 protein_coding synonymous_variant LOW 1398T>C Gly466Gly
M0173300 JHPKDHPL_00057 48895 3 Gut 0.38 protein_coding synonymous_variant LOW 1404C>T Pro468Pro
M0173301 JHPKDHPL_00057 48899 5 Gut 0.63 protein_coding missense_variant MODERATE 1408T>G Ser470Ala
M0173302 JHPKDHPL_00057 48937 3 Gut 0.38 protein_coding synonymous_variant LOW 1446T>C Ser482Ser
M0173303 JHPKDHPL_00057 48967 3 Gut 0.38 protein_coding synonymous_variant LOW 1476G>A Val492Val
M0173304 JHPKDHPL_00057 49000 3 Gut 0.38 protein_coding synonymous_variant LOW 1509T>G Ala503Ala
M0173305 JHPKDHPL_00057 49006 3 Gut 0.38 protein_coding synonymous_variant LOW 1515A>G Ala505Ala
M0173306 JHPKDHPL_00057 49015 3 Gut 0.38 protein_coding synonymous_variant LOW 1524G>A Leu508Leu
M0173307 JHPKDHPL_00057 49039 3 Gut 0.38 protein_coding synonymous_variant LOW 1548T>C Ser516Ser
M0173308 JHPKDHPL_00057 49043 3 Gut 0.38 protein_coding missense_variant MODERATE 1552G>C Gly518Arg
M0173309 JHPKDHPL_00057 49087 3 Gut 0.38 protein_coding synonymous_variant LOW 1596T>C Tyr532Tyr
M0173310 JHPKDHPL_00057 49148 3 Gut 0.38 protein_coding synonymous_variant LOW 1657T>C Leu553Leu
M0173311 JHPKDHPL_00057 49159 3 Gut 0.38 protein_coding synonymous_variant LOW 1668T>C Gly556Gly
M0173312 JHPKDHPL_00057 49168 3 Gut 0.38 protein_coding synonymous_variant LOW 1677C>T Gly559Gly
M0173313 JHPKDHPL_00057 49177 3 Gut 0.38 protein_coding synonymous_variant LOW 1686C>T Ala562Ala
M0173314 JHPKDHPL_00057 49180 3 Gut 0.38 protein_coding synonymous_variant LOW 1689A>G Glu563Glu
M0173315 JHPKDHPL_00057 49210 5 Gut 0.63 protein_coding synonymous_variant LOW 1719G>T Arg573Arg
M0173316 JHPKDHPL_00057 49216 5 Gut 0.63 protein_coding synonymous_variant LOW 1725A>G Thr575Thr
M0173317 JHPKDHPL_00057 49252 5 Gut 0.63 protein_coding synonymous_variant LOW 1761A>G Pro587Pro
M0173318 JHPKDHPL_00057 49255 5 Gut 0.63 protein_coding synonymous_variant LOW 1764G>A Thr588Thr
M0173319 JHPKDHPL_00057 49300 3 Gut 0.38 protein_coding synonymous_variant LOW 1809G>A Glu603Glu
M0173320 JHPKDHPL_00057 49315 3 Gut 0.38 protein_coding synonymous_variant LOW 1824G>C Ala608Ala
M0173321 JHPKDHPL_00057 49330 5 Gut 0.63 protein_coding synonymous_variant LOW 1839A>G Pro613Pro
M0173322 JHPKDHPL_00057 49429 3 Gut 0.38 protein_coding synonymous_variant LOW 1938G>A Leu646Leu
M0173323 JHPKDHPL_00057 49462 3 Gut 0.38 protein_coding synonymous_variant LOW 1971A>G Gln657Gln
M0173324 JHPKDHPL_00057 49465 3 Gut 0.38 protein_coding synonymous_variant LOW 1974C>T Ile658Ile
M0173325 JHPKDHPL_00057 49474 3 Gut 0.38 protein_coding synonymous_variant LOW 1983G>A Arg661Arg
M0173326 JHPKDHPL_00057 49480 3 Gut 0.38 protein_coding synonymous_variant LOW 1989A>T Thr663Thr
M0173327 JHPKDHPL_00057 49486 3 Gut 0.38 protein_coding synonymous_variant LOW 1995C>T Asn665Asn
M0173328 JHPKDHPL_00057 49504 3 Gut 0.38 protein_coding synonymous_variant LOW 2013G>A Arg671Arg
M0173329 JHPKDHPL_00057 49522 3 Gut 0.38 protein_coding synonymous_variant LOW 2031T>C Asp677Asp
M0173330 JHPKDHPL_00057 49545 3 Gut 0.38 protein_coding missense_variant MODERATE 2054A>G Asn685Ser
M0173331 JHPKDHPL_00057 49574 3 Gut 0.38 protein_coding synonymous_variant LOW 2083C>T Leu695Leu
M0173332 JHPKDHPL_00057 49717 3 Gut 0.38 protein_coding synonymous_variant LOW 2226T>C Arg742Arg
M0173333 JHPKDHPL_00057 49783 3 Gut 0.38 protein_coding synonymous_variant LOW 2292C>T Ser764Ser
M0173334 JHPKDHPL_00057 49786 3 Gut 0.38 protein_coding synonymous_variant LOW 2295C>T Gly765Gly
M0173335 JHPKDHPL_00057 49813 3 Gut 0.38 protein_coding synonymous_variant LOW 2322C>A Ala774Ala
M0173336 JHPKDHPL_00057 49816 3 Gut 0.38 protein_coding synonymous_variant LOW 2325C>G Val775Val
M0173337 JHPKDHPL_00057 49834 5 Gut 0.63 protein_coding synonymous_variant LOW 2343T>C Asp781Asp
M0173338 JHPKDHPL_00058 49968 3 Gut 0.38 protein_coding missense_variant MODERATE 10A>G Asn4Asp
M0173339 JHPKDHPL_00058 49970 5 Gut 0.63 protein_coding synonymous_variant LOW 12C>T Asn4Asn
M0173340 JHPKDHPL_00058 49991 5 Gut 0.63 protein_coding synonymous_variant LOW 33G>A Lys11Lys
M0173341 JHPKDHPL_00058 50053 5 Gut 0.63 protein_coding missense_variant MODERATE 95A>G His32Arg
M0173342 JHPKDHPL_00058 50131 5 Gut 0.63 protein_coding missense_variant MODERATE 173C>A Pro58Gln
M0173343 JHPKDHPL_00058 50174 5 Gut 0.63 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0173344 JHPKDHPL_00058 50234 3 Gut 0.38 protein_coding synonymous_variant LOW 276T>C Ser92Ser
M0173345 JHPKDHPL_00058 50237 3 Gut 0.38 protein_coding synonymous_variant LOW 279C>T Thr93Thr
M0173346 JHPKDHPL_00058 50262 3 Gut 0.38 protein_coding missense_variant MODERATE 304C>A Gln102Lys
M0173347 JHPKDHPL_00058 50266 3 Gut 0.38 protein_coding missense_variant MODERATE 308A>G Asn103Ser
M0173348 JHPKDHPL_00058 50353 5 Gut 0.63 protein_coding missense_variant MODERATE 395A>G Lys132Arg
M0173349 JHPKDHPL_00058 50423 3 Gut 0.38 protein_coding synonymous_variant LOW 465C>G Ser155Ser
M0173350 JHPKDHPL_00058 50668 5 Gut 0.63 protein_coding missense_variant MODERATE 710A>G Asn237Ser
M0173351 JHPKDHPL_00058 50679 3 Gut 0.38 protein_coding missense_variant MODERATE 721G>A Glu241Lys
M0173352 JHPKDHPL_00058 50966 3 Gut 0.38 protein_coding synonymous_variant LOW 1008T>C Asn336Asn
M0173353 JHPKDHPL_00058 50977 3 Gut 0.38 protein_coding missense_variant MODERATE 1019C>T Ala340Val
M0173354 JHPKDHPL_00058 50999 3 Gut 0.38 protein_coding synonymous_variant LOW 1041C>T Asp347Asp
M0173355 JHPKDHPL_00058 51002 5 Gut 0.63 protein_coding synonymous_variant LOW 1044T>G Arg348Arg
M0173356 JHPKDHPL_00058 51005 5 Gut 0.63 protein_coding synonymous_variant LOW 1047T>A Leu349Leu
M0173357 JHPKDHPL_00058 51017 5 Gut 0.63 protein_coding synonymous_variant LOW 1059A>T Gly353Gly
M0173358 JHPKDHPL_00058 51044 3 Gut 0.38 protein_coding synonymous_variant LOW 1086A>G Glu362Glu
M0173359 JHPKDHPL_00058 51048 3 Gut 0.38 protein_coding synonymous_variant LOW 1090T>C Leu364Leu
M0173360 JHPKDHPL_00058 51053 3 Gut 0.38 protein_coding synonymous_variant LOW 1095G>A Gly365Gly
M0173361 JHPKDHPL_00058 51080 5 Gut 0.63 protein_coding synonymous_variant LOW 1122G>A Thr374Thr
M0173362 JHPKDHPL_00058 51211 3 Gut 0.38 protein_coding missense_variant MODERATE 1253C>T Ser418Leu
M0173363 JHPKDHPL_00058 51302 5 Gut 0.63 protein_coding synonymous_variant LOW 1344A>G Lys448Lys
M0173364 JHPKDHPL_00058 51394 3 Gut 0.38 protein_coding missense_variant MODERATE 1436C>G Thr479Arg
M0173365 JHPKDHPL_00058 51509 5 Gut 0.63 protein_coding synonymous_variant LOW 1551T>C Pro517Pro
M0173366 JHPKDHPL_00058 51637 3 Gut 0.38 protein_coding missense_variant MODERATE 1679C>T Ala560Val
M0173367 JHPKDHPL_00058 51782 3 Gut 0.38 protein_coding synonymous_variant LOW 1824A>G Val608Val
M0173368 JHPKDHPL_00058 52094 5 Gut 0.63 protein_coding synonymous_variant LOW 2136T>G Thr712Thr
M0173369 JHPKDHPL_00058 52204 3 Gut 0.38 protein_coding missense_variant MODERATE 2246A>C Gln749Pro
M0173370 JHPKDHPL_00058 52223 5 Gut 0.63 protein_coding synonymous_variant LOW 2265C>T Phe755Phe
M0173371 JHPKDHPL_00058 52262 3 Gut 0.38 protein_coding synonymous_variant LOW 2304G>T Pro768Pro
M0173372 JHPKDHPL_00059 52482 3 Gut 0.38 protein_coding missense_variant MODERATE 54G>A Met18Ile
M0173373 JHPKDHPL_00059 52487 3 Gut 0.38 protein_coding missense_variant MODERATE 59C>T Ala20Val
M0173374 JHPKDHPL_00059 52551 3 Gut 0.38 protein_coding synonymous_variant LOW 123G>A Thr41Thr
M0173375 JHPKDHPL_00059 52574 5 Gut 0.63 protein_coding missense_variant MODERATE 146T>G Val49Gly
M0173376 JHPKDHPL_00059 52578 5 Gut 0.63 protein_coding synonymous_variant LOW 150G>A Glu50Glu
M0173377 JHPKDHPL_00059 52624 3 Gut 0.38 protein_coding missense_variant MODERATE 196G>T Val66Phe
M0173378 JHPKDHPL_00059 52626 5 Gut 0.63 protein_coding synonymous_variant LOW 198C>T Val66Val
M0173379 JHPKDHPL_00059 52662 3 Gut 0.38 protein_coding synonymous_variant LOW 234A>G Gln78Gln
M0173380 JHPKDHPL_00059 52663 3 Gut 0.38 protein_coding missense_variant MODERATE 235A>C Ile79Leu
M0173381 JHPKDHPL_00059 52668 5 Gut 0.63 protein_coding synonymous_variant LOW 240A>G Glu80Glu
M0173382 JHPKDHPL_00059 52686 3 Gut 0.38 protein_coding synonymous_variant LOW 258A>G Ala86Ala
M0173383 JHPKDHPL_00059 52692 3 Gut 0.38 protein_coding synonymous_variant LOW 264A>T Ala88Ala
M0173384 JHPKDHPL_00059 52725 3 Gut 0.38 protein_coding synonymous_variant LOW 297A>G Lys99Lys
M0173385 JHPKDHPL_00059 52734 3 Gut 0.38 protein_coding synonymous_variant LOW 306T>C Val102Val
M0173386 JHPKDHPL_00059 52800 5 Gut 0.63 protein_coding synonymous_variant LOW 372T>C Ser124Ser
M0173387 JHPKDHPL_00059 52881 5 Gut 0.63 protein_coding synonymous_variant LOW 453A>G Leu151Leu
M0173388 JHPKDHPL_00059 52898 3 Gut 0.38 protein_coding missense_variant MODERATE 470A>G Lys157Arg
M0173389 JHPKDHPL_00059 52922 5 Gut 0.63 protein_coding missense_variant MODERATE 494A>G His165Arg
M0173390 JHPKDHPL_00060 52969 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -2T>C None
M0173391 JHPKDHPL_00060 53005 5 Gut 0.63 protein_coding missense_variant MODERATE 35A>G Asn12Ser
M0173392 JHPKDHPL_00060 53061 3 Gut 0.38 protein_coding synonymous_variant LOW 91C>T Leu31Leu
M0173393 JHPKDHPL_00060 53072 3 Gut 0.38 protein_coding synonymous_variant LOW 102T>A Ala34Ala
M0173394 JHPKDHPL_00060 53114 3 Gut 0.38 protein_coding synonymous_variant LOW 144A>G Ala48Ala
M0173395 JHPKDHPL_00060 53144 3 Gut 0.38 protein_coding missense_variant MODERATE 174C>A Asp58Glu
M0173396 JHPKDHPL_00060 53174 3 Gut 0.38 protein_coding missense_variant MODERATE 204A>C Arg68Ser
M0173397 JHPKDHPL_00060 53190 3 Gut 0.38 protein_coding missense_variant MODERATE 220G>A Gly74Arg
M0173398 JHPKDHPL_00061 53206 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -31G>C None
M0173399 JHPKDHPL_00061 53207 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -30A>G None
M0173400 JHPKDHPL_00061 53209 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -28G>A None
M0173401 JHPKDHPL_00061 53210 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -27T>C None
M0173402 JHPKDHPL_00061 53213 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -24A>G None
M0173403 JHPKDHPL_00061 53216 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -21A>G None
M0173404 JHPKDHPL_00061 53224 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -13A>G None
M0173405 JHPKDHPL_00061 53229 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -8T>G None
M0173406 JHPKDHPL_00061 53319 5 Gut 0.63 protein_coding missense_variant MODERATE 83G>C Arg28Pro
M0173407 JHPKDHPL_00061 53344 5 Gut 0.63 protein_coding synonymous_variant LOW 108G>A Leu36Leu
M0173408 JHPKDHPL_00061 53347 5 Gut 0.63 protein_coding synonymous_variant LOW 111G>A Gln37Gln
M0173409 JHPKDHPL_00061 53467 5 Gut 0.63 protein_coding synonymous_variant LOW 231G>A Glu77Glu
M0173410 JHPKDHPL_00061 54167 3 Gut 0.38 protein_coding missense_variant MODERATE 931C>A Gln311Lys
M0173411 JHPKDHPL_00061 54283 5 Gut 0.63 protein_coding missense_variant MODERATE 1047G>T Met349Ile
M0173412 JHPKDHPL_00061 54293 5 Gut 0.63 protein_coding missense_variant MODERATE 1057T>C Ser353Pro
M0173413 JHPKDHPL_00061 54316 3 Gut 0.38 protein_coding synonymous_variant LOW 1080T>A Arg360Arg
M0173414 JHPKDHPL_00061 54319 3 Gut 0.38 protein_coding synonymous_variant LOW 1083G>A Gln361Gln
M0173415 JHPKDHPL_00061 54334 5 Gut 0.63 protein_coding synonymous_variant LOW 1098C>A Thr366Thr
M0173416 JHPKDHPL_00061 54349 5 Gut 0.63 protein_coding synonymous_variant LOW 1113G>A Glu371Glu
M0173417 JHPKDHPL_00061 54390 5 Gut 0.63 protein_coding missense_variant MODERATE 1154T>C Leu385Ser
M0173418 JHPKDHPL_00062 54402 5 Gut 0.63 protein_coding upstream_gene_variant MODIFIER -10T>C None
M0173419 JHPKDHPL_00062 54525 5 Gut 0.63 protein_coding synonymous_variant LOW 114G>A Leu38Leu
M0173420 JHPKDHPL_00062 54709 3 Gut 0.38 protein_coding missense_variant MODERATE 298G>A Val100Ile
M0173421 JHPKDHPL_00062 54732 5 Gut 0.63 protein_coding synonymous_variant LOW 321T>C Ile107Ile
M0173422 JHPKDHPL_00062 54739 3 Gut 0.38 protein_coding missense_variant MODERATE 328G>A Val110Ile
M0173423 JHPKDHPL_00062 54749 3 Gut 0.38 protein_coding missense_variant MODERATE 338G>C Ser113Thr
M0173424 JHPKDHPL_00062 54752 3 Gut 0.38 protein_coding missense_variant MODERATE 341A>G Lys114Arg
M0173425 JHPKDHPL_00062 54753 3 Gut 0.38 protein_coding synonymous_variant LOW 342A>G Lys114Lys
M0173426 JHPKDHPL_00062 54768 5 Gut 0.63 protein_coding synonymous_variant LOW 357T>G Pro119Pro
M0173427 JHPKDHPL_00062 54771 3 Gut 0.38 protein_coding synonymous_variant LOW 360A>G Ala120Ala
M0173428 JHPKDHPL_00062 54777 5 Gut 0.63 protein_coding synonymous_variant LOW 366G>C Val122Val
M0173429 JHPKDHPL_00062 54798 3 Gut 0.38 protein_coding synonymous_variant LOW 387T>C Ser129Ser
M0173430 JHPKDHPL_00062 54918 3 Gut 0.38 protein_coding synonymous_variant LOW 507G>A Pro169Pro
M0173431 JHPKDHPL_00062 54944 3 Gut 0.38 protein_coding missense_variant MODERATE 533A>G His178Arg
M0173432 JHPKDHPL_00062 55230 5 Gut 0.63 protein_coding synonymous_variant LOW 819G>A Lys273Lys
M0173433 JHPKDHPL_00062 55257 5 Gut 0.63 protein_coding synonymous_variant LOW 846C>T Leu282Leu
M0173434 JHPKDHPL_00064 55973 5 Gut 0.63 protein_coding splice_region_variant&stop_retained_variant LOW 137A>G Ter46Ter
M0173435 JHPKDHPL_00065 56086 5 Gut 0.63 protein_coding missense_variant MODERATE 91G>A Ala31Thr
M0173436 JHPKDHPL_00065 56274 5 Gut 0.63 protein_coding synonymous_variant LOW 279A>G Glu93Glu
M0173437 JHPKDHPL_00066 56725 5 Gut 0.63 protein_coding synonymous_variant LOW 357C>T Thr119Thr
M0173438 JHPKDHPL_00066 56729 5 Gut 0.63 protein_coding missense_variant MODERATE 361A>G Ile121Val
M0173439 JHPKDHPL_00066 57241 5 Gut 0.63 protein_coding synonymous_variant LOW 873T>C Phe291Phe
M0173440 JHPKDHPL_00066 57318 5 Gut 0.63 protein_coding missense_variant MODERATE 950T>C Ile317Thr
M0173441 JHPKDHPL_00066 57323 5 Gut 0.63 protein_coding missense_variant MODERATE 955G>A Val319Met
M0173442 JHPKDHPL_00066 57401 5 Gut 0.63 protein_coding missense_variant MODERATE 1033G>A Ala345Thr
M0173443 JHPKDHPL_00066 57478 5 Gut 0.63 protein_coding synonymous_variant LOW 1110G>A Leu370Leu
M0173444 JHPKDHPL_00066 57493 5 Gut 0.63 protein_coding missense_variant MODERATE 1125T>G Asp375Glu
M0173445 JHPKDHPL_00066 57595 5 Gut 0.63 protein_coding synonymous_variant LOW 1227C>T Gly409Gly
M0173446 JHPKDHPL_00066 57619 5 Gut 0.63 protein_coding synonymous_variant LOW 1251C>G Ala417Ala
M0173447 JHPKDHPL_00066 57694 5 Gut 0.63 protein_coding synonymous_variant LOW 1326A>G Glu442Glu
M0173448 JHPKDHPL_00066 57706 5 Gut 0.63 protein_coding synonymous_variant LOW 1338T>C His446His
M0173449 JHPKDHPL_00066 57826 5 Gut 0.63 protein_coding synonymous_variant LOW 1458T>C Val486Val
M0173450 JHPKDHPL_00066 57839 5 Gut 0.63 protein_coding missense_variant MODERATE 1471A>G Asn491Asp
M0173451 JHPKDHPL_00066 57868 5 Gut 0.63 protein_coding missense_variant MODERATE 1500A>C Gln500His
M0173452 JHPKDHPL_00066 58153 5 Gut 0.63 protein_coding missense_variant MODERATE 1785C>A Asn595Lys
M0173453 JHPKDHPL_00066 58209 5 Gut 0.63 protein_coding missense_variant MODERATE 1841C>G Thr614Ser
M0173454 JHPKDHPL_00066 58330 5 Gut 0.63 protein_coding synonymous_variant LOW 1962T>A Ile654Ile
M0173455 JHPKDHPL_00066 58389 5 Gut 0.63 protein_coding missense_variant MODERATE 2021C>T Thr674Ile
M0173456 JHPKDHPL_00066 58501 5 Gut 0.63 protein_coding missense_variant MODERATE 2133C>A Asp711Glu
M0173457 JHPKDHPL_00066 58508 5 Gut 0.63 protein_coding missense_variant MODERATE 2140G>A Asp714Asn
M0173458 JHPKDHPL_00066 58511 5 Gut 0.63 protein_coding missense_variant MODERATE 2143G>A Asp715Asn
M0173459 JHPKDHPL_00066 58529 5 Gut 0.63 protein_coding missense_variant MODERATE 2161C>T Pro721Ser
M0173460 JHPKDHPL_00066 58531 5 Gut 0.63 protein_coding synonymous_variant LOW 2163T>C Pro721Pro
M0173461 JHPKDHPL_00066 58539 5 Gut 0.63 protein_coding missense_variant MODERATE 2171A>G Glu724Gly
M0173462 JHPKDHPL_00067 58875 5 Gut 0.63 protein_coding synonymous_variant LOW 255G>A Ala85Ala
M0173463 JHPKDHPL_00067 58881 5 Gut 0.63 protein_coding synonymous_variant LOW 261C>G Ala87Ala
M0173464 JHPKDHPL_00067 59022 5 Gut 0.63 protein_coding synonymous_variant LOW 402G>A Gln134Gln
M0173465 JHPKDHPL_00067 59049 6 Gut 0.75 protein_coding synonymous_variant LOW 429T>C Gly143Gly
M0173466 JHPKDHPL_00067 59100 5 Gut 0.63 protein_coding missense_variant MODERATE 480A>T Lys160Asn
M0173467 JHPKDHPL_00067 59130 5 Gut 0.63 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0173468 JHPKDHPL_00067 59238 5 Gut 0.63 protein_coding synonymous_variant LOW 618A>G Arg206Arg
M0173469 JHPKDHPL_00067 59313 5 Gut 0.63 protein_coding synonymous_variant LOW 693A>G Leu231Leu
M0173470 JHPKDHPL_00067 59344 6 Gut 0.75 protein_coding missense_variant MODERATE 724A>G Ile242Val
M0173471 JHPKDHPL_00067 59387 5 Gut 0.63 protein_coding missense_variant MODERATE 767C>G Ala256Gly
M0173472 JHPKDHPL_00067 59452 6 Gut 0.75 protein_coding synonymous_variant LOW 832A>C Arg278Arg
M0173473 JHPKDHPL_00067 59532 6 Gut 0.75 protein_coding synonymous_variant LOW 912C>A Ala304Ala
M0173474 JHPKDHPL_00067 59780 4 Gut 0.50 protein_coding missense_variant MODERATE 1160A>C Asp387Ala
M0173475 JHPKDHPL_00067 59818 5 Gut 0.63 protein_coding synonymous_variant LOW 1198A>C Arg400Arg
M0173476 JHPKDHPL_00067 59877 4 Gut 0.50 protein_coding synonymous_variant LOW 1257C>T Asp419Asp
M0173477 JHPKDHPL_00067 59926 5 Gut 0.63 protein_coding missense_variant MODERATE 1306A>C Lys436Gln
M0173478 JHPKDHPL_00067 59950 4 Gut 0.50 protein_coding synonymous_variant LOW 1330C>A Arg444Arg
M0173479 JHPKDHPL_00067 59989 4 Gut 0.50 protein_coding missense_variant MODERATE 1369C>T His457Tyr
M0173480 JHPKDHPL_00068 60023 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -455C>T None
M0173481 JHPKDHPL_00068 60142 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -336G>A None
M0173482 JHPKDHPL_00068 60162 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -316A>G None
M0173483 JHPKDHPL_00068 60256 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -222A>G None
M0173484 JHPKDHPL_00068 60273 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -205A>G None
M0173485 JHPKDHPL_00068 60298 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -180A>G None
M0173486 JHPKDHPL_00053 45487 3 Gut 0.38 protein_coding synonymous_variant LOW 1311C>T Asn437Asn
M0173487 JHPKDHPL_00053 45559 3 Gut 0.38 protein_coding synonymous_variant LOW 1383G>A Pro461Pro
M0173488 JHPKDHPL_00053 45604 3 Gut 0.38 protein_coding synonymous_variant LOW 1428T>C Tyr476Tyr
M0173489 JHPKDHPL_00053 45646 3 Gut 0.38 protein_coding synonymous_variant LOW 1470A>G Lys490Lys
M0173490 JHPKDHPL_00053 45649 3 Gut 0.38 protein_coding synonymous_variant LOW 1473C>T Ile491Ile
M0173491 JHPKDHPL_00053 45655 3 Gut 0.38 protein_coding synonymous_variant LOW 1479T>C Gly493Gly
M0173492 JHPKDHPL_00053 45661 3 Gut 0.38 protein_coding synonymous_variant LOW 1485G>A Gly495Gly
M0173493 JHPKDHPL_00053 45706 3 Gut 0.38 protein_coding synonymous_variant LOW 1530T>C Gly510Gly
M0173494 JHPKDHPL_00047 41159 3 Gut 0.38 protein_coding stop_gained HIGH 149C>G Ser50*
M0173495 JHPKDHPL_00047 41184 3 Gut 0.38 protein_coding synonymous_variant LOW 174C>A Ser58Ser
M0173496 JHPKDHPL_00047 41189 3 Gut 0.38 protein_coding missense_variant MODERATE 179C>T Thr60Ile
M0173497 JHPKDHPL_00048 41212 3 Gut 0.38 protein_coding start_lost HIGH 1A>G Met1?
M0173498 JHPKDHPL_00048 41227 3 Gut 0.38 protein_coding missense_variant MODERATE 16T>C Phe6Leu
M0173499 JHPKDHPL_00048 41245 3 Gut 0.38 protein_coding missense_variant MODERATE 34G>A Val12Ile
M0173500 JHPKDHPL_00048 41278 3 Gut 0.38 protein_coding missense_variant MODERATE 67G>A Ala23Thr
M0173501 JHPKDHPL_00048 41281 3 Gut 0.38 protein_coding missense_variant MODERATE 70G>A Ala24Thr
M0173502 JHPKDHPL_00048 41290 3 Gut 0.38 protein_coding missense_variant MODERATE 79G>A Val27Ile
M0173503 JHPKDHPL_00048 41298 3 Gut 0.38 protein_coding synonymous_variant LOW 87G>A Gly29Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JHPKDHPL_00030 QPC15517.1|GH15 100 0 1 900 1 1
JHPKDHPL_00058 QOP57123.1|GH73 100 0 1 818 1 0.9915
JHPKDHPL_00069 QOP57133.1|GT2 100 0 1 494 1 1
JHPKDHPL_00076 QOP57139.1|GH170 100 9.45e-257 1 353 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term