Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C738
  Reference Plasmid   NZ_CP054001.1
  Reference Plasmid Size   51017
  Reference Plasmid GC Content   0.33
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0173848 OHAGEJDK_00018 12791 3 Gut 0.13 protein_coding synonymous_variant LOW 501T>C Asp167Asp
M0173849 OHAGEJDK_00018 12839 3 Gut 0.13 protein_coding synonymous_variant LOW 549T>C Asn183Asn
M0173850 OHAGEJDK_00018 12854 3 Gut 0.13 protein_coding synonymous_variant LOW 564T>C Asp188Asp
M0173851 OHAGEJDK_00018 12923 3 Gut 0.13 protein_coding synonymous_variant LOW 633G>A Val211Val
M0173852 OHAGEJDK_00018 13151 3 Gut 0.13 protein_coding synonymous_variant LOW 861T>C Phe287Phe
M0173853 OHAGEJDK_00020 13181 3 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -729T>C None
M0173854 OHAGEJDK_00019 13372 3 Gut 0.13 protein_coding synonymous_variant LOW 498C>T Gly166Gly
M0173855 OHAGEJDK_00019 13735 3 Gut 0.13 protein_coding synonymous_variant LOW 135G>A Lys45Lys
M0173856 OHAGEJDK_00019 13838 3 Gut 0.13 protein_coding missense_variant MODERATE 32G>A Cys11Tyr
M0173857 OHAGEJDK_00019 13849 3 Gut 0.13 protein_coding synonymous_variant LOW 21A>G Val7Val
M0173858 OHAGEJDK_00019 13851 3 Gut 0.13 protein_coding missense_variant MODERATE 19G>A Val7Ile
M0173859 OHAGEJDK_00019 13893 3 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -24T>C None
M0173860 OHAGEJDK_00021 16030 3 Gut 0.13 protein_coding missense_variant MODERATE 1400A>G Asn467Ser
M0173861 OHAGEJDK_00021 16136 3 Gut 0.13 protein_coding synonymous_variant LOW 1506T>C Leu502Leu
M0173862 OHAGEJDK_00015 11429 3 Gut 0.13 protein_coding synonymous_variant LOW 333A>G Leu111Leu
M0173863 OHAGEJDK_00015 11460 3 Gut 0.13 protein_coding synonymous_variant LOW 364T>C Leu122Leu
M0173864 OHAGEJDK_00016 11707 3 Gut 0.13 protein_coding synonymous_variant LOW 165T>C Val55Val
M0173865 OHAGEJDK_00016 11725 3 Gut 0.13 protein_coding synonymous_variant LOW 183T>C Val61Val
M0173866 OHAGEJDK_00016 11761 3 Gut 0.13 protein_coding synonymous_variant LOW 219C>T Leu73Leu
M0173867 OHAGEJDK_00016 11806 3 Gut 0.13 protein_coding synonymous_variant LOW 264T>C Asn88Asn
M0173868 OHAGEJDK_00016 11812 3 Gut 0.13 protein_coding synonymous_variant LOW 270C>T Arg90Arg
M0173869 OHAGEJDK_00011 6740 3 Gut 0.13 protein_coding synonymous_variant LOW 54C>T Cys18Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
OHAGEJDK_00023 9.B.154.1.1 95.2 3.1e-84 1 167 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.154 The Putative Holin-2 (PH-2) Family