Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C751
  Reference Plasmid   NZ_CP055285.1
  Reference Plasmid Size   85229
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0101072 FFJFBBJO_00031 26687 4 Skin 0.20 protein_coding synonymous_variant LOW 246C>T His82His
M0101073 FFJFBBJO_00031 26690 4 Skin 0.20 protein_coding synonymous_variant LOW 243G>A Leu81Leu
M0101074 FFJFBBJO_00031 26720 4 Skin 0.20 protein_coding synonymous_variant LOW 213C>A Gly71Gly
M0101075 FFJFBBJO_00031 26800 3 Skin 0.15 protein_coding missense_variant MODERATE 133A>C Lys45Gln
M0101076 FFJFBBJO_00031 26807 3 Skin 0.15 protein_coding synonymous_variant LOW 126C>T Ala42Ala
M0101077 FFJFBBJO_00031 26855 3 Skin 0.15 protein_coding synonymous_variant LOW 78T>C Leu26Leu
M0101078 FFJFBBJO_00031 26887 3 Skin 0.15 protein_coding missense_variant MODERATE 46G>A Asp16Asn
M0101079 FFJFBBJO_00031 26900 3 Skin 0.15 protein_coding synonymous_variant LOW 33A>C Gly11Gly
M0101080 FFJFBBJO_00032 26956 3 Skin 0.15 protein_coding missense_variant MODERATE 222G>T Gln74His
M0101081 FFJFBBJO_00032 27001 3 Skin 0.15 protein_coding synonymous_variant LOW 177C>T His59His
M0101082 FFJFBBJO_00032 27039 3 Skin 0.15 protein_coding missense_variant MODERATE 139G>A Glu47Lys
M0101083 FFJFBBJO_00032 27172 3 Skin 0.15 protein_coding synonymous_variant LOW 6T>C Gly2Gly
M0101084 FFJFBBJO_00025 27215 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4942G>A None
M0101085 FFJFBBJO_00025 27236 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4963C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
FFJFBBJO_00038 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 70.4 1.2e-58 7 165 0.9636 0.9695 prediction
KHGKEGMA_00038 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 70.4 1.2e-58 7 165 0.9636 0.9695 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term