Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C769
  Reference Plasmid   NZ_CP059411.1
  Reference Plasmid Size   29300
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0176509 CHLLCBLH_00018 15930 8 Gut 0.30 protein_coding synonymous_variant LOW 825G>A Ala275Ala
M0176510 CHLLCBLH_00018 16257 8 Gut 0.30 protein_coding synonymous_variant LOW 498G>A Lys166Lys
M0176511 CHLLCBLH_00018 16272 8 Gut 0.30 protein_coding synonymous_variant LOW 483T>C Asn161Asn
M0176512 CHLLCBLH_00018 16281 7 Gut 0.26 protein_coding synonymous_variant LOW 474C>T Asn158Asn
M0176513 CHLLCBLH_00018 16290 8 Gut 0.30 protein_coding synonymous_variant LOW 465G>T Arg155Arg
M0176514 CHLLCBLH_00018 16306 8 Gut 0.30 protein_coding missense_variant MODERATE 449T>A Phe150Tyr
M0176515 CHLLCBLH_00018 16314 8 Gut 0.30 protein_coding synonymous_variant LOW 441C>T Pro147Pro
M0176516 CHLLCBLH_00018 16317 8 Gut 0.30 protein_coding synonymous_variant LOW 438T>C Arg146Arg
M0176517 CHLLCBLH_00018 16326 8 Gut 0.30 protein_coding synonymous_variant LOW 429T>C Leu143Leu
M0176518 CHLLCBLH_00018 16338 8 Gut 0.30 protein_coding synonymous_variant LOW 417G>A Thr139Thr
M0176519 CHLLCBLH_00018 16377 8 Gut 0.30 protein_coding synonymous_variant LOW 378T>C Asp126Asp
M0176520 CHLLCBLH_00018 16383 8 Gut 0.30 protein_coding synonymous_variant LOW 372C>A Leu124Leu
M0176521 CHLLCBLH_00018 16428 8 Gut 0.30 protein_coding synonymous_variant LOW 327C>T Thr109Thr
M0176522 CHLLCBLH_00018 16469 8 Gut 0.30 protein_coding synonymous_variant LOW 286C>T Leu96Leu
M0176523 CHLLCBLH_00018 16536 8 Gut 0.30 protein_coding synonymous_variant LOW 219A>G Glu73Glu
M0176524 CHLLCBLH_00018 16560 7 Gut 0.26 protein_coding synonymous_variant LOW 195G>A Gln65Gln
M0176525 CHLLCBLH_00018 16575 7 Gut 0.26 protein_coding synonymous_variant LOW 180A>G Ala60Ala
M0176526 CHLLCBLH_00018 16605 7 Gut 0.26 protein_coding synonymous_variant LOW 150T>C Asn50Asn
M0176527 CHLLCBLH_00018 16614 7 Gut 0.26 protein_coding synonymous_variant LOW 141A>G Glu47Glu
M0176528 CHLLCBLH_00018 16647 7 Gut 0.26 protein_coding synonymous_variant LOW 108T>C Ala36Ala
M0176529 CHLLCBLH_00018 16674 6 Gut 0.22 protein_coding synonymous_variant LOW 81T>C Arg27Arg
M0176530 CHLLCBLH_00018 16683 6 Gut 0.22 protein_coding synonymous_variant LOW 72T>C Phe24Phe
M0176531 CHLLCBLH_00018 16710 6 Gut 0.22 protein_coding synonymous_variant LOW 45T>C Ala15Ala
M0176532 CHLLCBLH_00018 16713 6 Gut 0.22 protein_coding synonymous_variant LOW 42C>A Ala14Ala
M0176533 CHLLCBLH_00018 16721 6 Gut 0.22 protein_coding missense_variant MODERATE 34G>C Val12Leu
M0176534 CHLLCBLH_00018 16722 6 Gut 0.22 protein_coding synonymous_variant LOW 33C>T Tyr11Tyr
M0176535 CHLLCBLH_00018 16731 6 Gut 0.22 protein_coding synonymous_variant LOW 24T>C Asn8Asn
M0176536 CHLLCBLH_00014 16764 7 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -4062T>G None
M0176537 CHLLCBLH_00019 16794 7 Gut 0.26 protein_coding missense_variant MODERATE 19A>G Ile7Val
M0176538 CHLLCBLH_00019 16797 7 Gut 0.26 protein_coding missense_variant MODERATE 22G>A Asp8Asn
M0176539 CHLLCBLH_00019 16851 6 Gut 0.22 protein_coding missense_variant MODERATE 76G>A Val26Ile
M0176540 CHLLCBLH_00019 16869 6 Gut 0.22 protein_coding stop_gained HIGH 94C>T Gln32*
M0176541 CHLLCBLH_00019 16890 7 Gut 0.26 protein_coding missense_variant MODERATE 115G>A Val39Ile
M0176542 CHLLCBLH_00019 16919 7 Gut 0.26 protein_coding synonymous_variant LOW 144G>A Gln48Gln
M0176543 CHLLCBLH_00019 16938 7 Gut 0.26 protein_coding missense_variant MODERATE 163T>A Tyr55Asn
M0176544 CHLLCBLH_00019 16950 7 Gut 0.26 protein_coding missense_variant MODERATE 175A>G Ser59Gly
M0176545 CHLLCBLH_00019 17083 7 Gut 0.26 protein_coding missense_variant MODERATE 308A>G Tyr103Cys
M0176546 CHLLCBLH_00020 17236 6 Gut 0.22 protein_coding synonymous_variant LOW 1077A>G Glu359Glu
M0176547 CHLLCBLH_00020 17242 7 Gut 0.26 protein_coding synonymous_variant LOW 1071T>C Asn357Asn
M0176548 CHLLCBLH_00020 17260 7 Gut 0.26 protein_coding synonymous_variant LOW 1053C>T Pro351Pro
M0176549 CHLLCBLH_00020 17263 7 Gut 0.26 protein_coding synonymous_variant LOW 1050C>T Ser350Ser
M0176550 CHLLCBLH_00020 17269 7 Gut 0.26 protein_coding synonymous_variant LOW 1044T>C Asp348Asp
M0176551 CHLLCBLH_00020 17287 7 Gut 0.26 protein_coding synonymous_variant LOW 1026C>T Asn342Asn
M0176552 CHLLCBLH_00020 17317 7 Gut 0.26 protein_coding synonymous_variant LOW 996T>C Phe332Phe
M0176553 CHLLCBLH_00020 17323 7 Gut 0.26 protein_coding synonymous_variant LOW 990T>C Pro330Pro
M0176554 CHLLCBLH_00020 17341 7 Gut 0.26 protein_coding synonymous_variant LOW 972A>G Val324Val
M0176555 CHLLCBLH_00020 17344 7 Gut 0.26 protein_coding synonymous_variant LOW 969A>G Glu323Glu
M0176556 CHLLCBLH_00020 17347 7 Gut 0.26 protein_coding synonymous_variant LOW 966C>T Phe322Phe
M0176557 CHLLCBLH_00020 17407 7 Gut 0.26 protein_coding synonymous_variant LOW 906A>C Gly302Gly
M0176558 CHLLCBLH_00020 17446 6 Gut 0.22 protein_coding synonymous_variant LOW 867C>T Ser289Ser
M0176559 CHLLCBLH_00020 17467 6 Gut 0.22 protein_coding synonymous_variant LOW 846A>G Thr282Thr
M0176560 CHLLCBLH_00020 17473 6 Gut 0.22 protein_coding synonymous_variant LOW 840T>C Arg280Arg
M0176561 CHLLCBLH_00020 17493 6 Gut 0.22 protein_coding synonymous_variant LOW 820T>C Leu274Leu
M0176562 CHLLCBLH_00020 17509 6 Gut 0.22 protein_coding synonymous_variant LOW 804T>C Asp268Asp
M0176563 CHLLCBLH_00020 17533 6 Gut 0.22 protein_coding synonymous_variant LOW 780T>C Phe260Phe
M0176564 CHLLCBLH_00020 17534 6 Gut 0.22 protein_coding missense_variant MODERATE 779T>A Phe260Tyr
M0176565 CHLLCBLH_00020 17542 6 Gut 0.22 protein_coding synonymous_variant LOW 771T>C Arg257Arg
M0176566 CHLLCBLH_00020 17568 6 Gut 0.22 protein_coding missense_variant MODERATE 745A>G Ile249Val
M0176567 CHLLCBLH_00020 17572 4 Gut 0.15 protein_coding synonymous_variant LOW 741C>T Tyr247Tyr
M0176568 CHLLCBLH_00020 17575 6 Gut 0.22 protein_coding synonymous_variant LOW 738A>G Glu246Glu
M0176569 CHLLCBLH_00020 17581 6 Gut 0.22 protein_coding synonymous_variant LOW 732C>T Arg244Arg
M0176570 CHLLCBLH_00020 17631 3 Gut 0.11 protein_coding synonymous_variant LOW 682T>C Leu228Leu
M0176571 CHLLCBLH_00020 17659 3 Gut 0.11 protein_coding synonymous_variant LOW 654T>A Pro218Pro
M0176572 CHLLCBLH_00020 17668 3 Gut 0.11 protein_coding synonymous_variant LOW 645A>G Leu215Leu
M0176573 CHLLCBLH_00020 17670 3 Gut 0.11 protein_coding synonymous_variant LOW 643T>C Leu215Leu
M0176574 CHLLCBLH_00020 17674 3 Gut 0.11 protein_coding synonymous_variant LOW 639A>G Glu213Glu
M0176575 CHLLCBLH_00020 17695 3 Gut 0.11 protein_coding synonymous_variant LOW 618A>T Ala206Ala
M0176576 CHLLCBLH_00020 17722 3 Gut 0.11 protein_coding synonymous_variant LOW 591A>G Leu197Leu
M0176577 CHLLCBLH_00020 17941 3 Gut 0.11 protein_coding synonymous_variant LOW 372T>A Ala124Ala
M0176578 CHLLCBLH_00020 17947 3 Gut 0.11 protein_coding synonymous_variant LOW 366C>T Arg122Arg
M0176579 CHLLCBLH_00020 18007 3 Gut 0.11 protein_coding synonymous_variant LOW 306G>A Thr102Thr
M0176580 CHLLCBLH_00020 18031 3 Gut 0.11 protein_coding synonymous_variant LOW 282T>C Gly94Gly
M0176581 CHLLCBLH_00020 18064 3 Gut 0.11 protein_coding synonymous_variant LOW 249G>A Ala83Ala
M0176582 CHLLCBLH_00020 18079 3 Gut 0.11 protein_coding synonymous_variant LOW 234A>G Ser78Ser
M0176583 CHLLCBLH_00020 18100 3 Gut 0.11 protein_coding synonymous_variant LOW 213G>A Leu71Leu
M0176584 CHLLCBLH_00020 18139 3 Gut 0.11 protein_coding synonymous_variant LOW 174C>T Ser58Ser
M0176585 CHLLCBLH_00020 18148 3 Gut 0.11 protein_coding synonymous_variant LOW 165G>A Gln55Gln
M0176586 CHLLCBLH_00020 18157 3 Gut 0.11 protein_coding synonymous_variant LOW 156C>T Ala52Ala
M0176587 CHLLCBLH_00020 18238 3 Gut 0.11 protein_coding synonymous_variant LOW 75C>T Gly25Gly
M0176588 CHLLCBLH_00020 18256 3 Gut 0.11 protein_coding synonymous_variant LOW 57C>T Arg19Arg
M0176589 CHLLCBLH_00016 18370 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3640A>G None
M0176590 CHLLCBLH_00017 15135 4 Gut 0.15 protein_coding synonymous_variant LOW 282T>C Ala94Ala
M0176591 CHLLCBLH_00017 15378 6 Gut 0.22 protein_coding synonymous_variant LOW 39C>T Val13Val
M0176592 CHLLCBLH_00017 15379 4 Gut 0.15 protein_coding missense_variant MODERATE 38T>C Val13Ala
M0176593 CHLLCBLH_00014 15499 6 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -2797A>G None
M0176594 CHLLCBLH_00018 15610 5 Gut 0.19 protein_coding missense_variant MODERATE 1145T>C Met382Thr
M0176595 CHLLCBLH_00018 15614 7 Gut 0.26 protein_coding synonymous_variant LOW 1141T>C Leu381Leu
M0176596 CHLLCBLH_00018 15654 3 Gut 0.11 protein_coding synonymous_variant LOW 1101C>T Ser367Ser
M0176597 CHLLCBLH_00018 15674 7 Gut 0.26 protein_coding missense_variant MODERATE 1081G>A Val361Ile
M0176598 CHLLCBLH_00018 15720 7 Gut 0.26 protein_coding synonymous_variant LOW 1035C>T Ala345Ala
M0176599 CHLLCBLH_00018 15804 5 Gut 0.19 protein_coding synonymous_variant LOW 951T>C Ser317Ser
M0176600 CHLLCBLH_00018 15828 7 Gut 0.26 protein_coding synonymous_variant LOW 927C>T Tyr309Tyr
M0176601 CHLLCBLH_00018 15852 6 Gut 0.22 protein_coding synonymous_variant LOW 903G>A Gln301Gln
M0176602 CHLLCBLH_00018 16149 5 Gut 0.19 protein_coding synonymous_variant LOW 606A>G Leu202Leu
M0176603 CHLLCBLH_00018 16151 5 Gut 0.19 protein_coding synonymous_variant LOW 604T>C Leu202Leu
M0176604 CHLLCBLH_00018 16158 4 Gut 0.15 protein_coding synonymous_variant LOW 597T>C Ile199Ile
M0176605 CHLLCBLH_00018 16161 5 Gut 0.19 protein_coding synonymous_variant LOW 594T>C Arg198Arg
M0176606 CHLLCBLH_00018 16176 5 Gut 0.19 protein_coding synonymous_variant LOW 579C>T Ser193Ser
M0176607 CHLLCBLH_00018 16179 5 Gut 0.19 protein_coding synonymous_variant LOW 576C>A Gly192Gly
M0176608 CHLLCBLH_00018 16182 5 Gut 0.19 protein_coding synonymous_variant LOW 573A>G Val191Val
M0176609 CHLLCBLH_00018 16203 5 Gut 0.19 protein_coding synonymous_variant LOW 552G>A Leu184Leu
M0176610 CHLLCBLH_00018 16209 5 Gut 0.19 protein_coding synonymous_variant LOW 546T>C Ser182Ser
M0176611 CHLLCBLH_00018 16211 5 Gut 0.19 protein_coding missense_variant MODERATE 544T>C Ser182Pro
M0176612 CHLLCBLH_00018 16221 5 Gut 0.19 protein_coding synonymous_variant LOW 534C>T Ile178Ile
M0176613 CHLLCBLH_00002 5478 4 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4729G>A None
M0176614 CHLLCBLH_00010 5523 5 Gut 0.19 protein_coding synonymous_variant LOW 21T>C Arg7Arg
M0176615 CHLLCBLH_00010 5537 5 Gut 0.19 protein_coding missense_variant MODERATE 35A>G Lys12Arg
M0176616 CHLLCBLH_00010 5619 5 Gut 0.19 protein_coding synonymous_variant LOW 117A>G Leu39Leu
M0176617 CHLLCBLH_00010 5841 5 Gut 0.19 protein_coding synonymous_variant LOW 339T>C Cys113Cys
M0176618 CHLLCBLH_00010 5931 5 Gut 0.19 protein_coding synonymous_variant LOW 429C>T His143His
M0176619 CHLLCBLH_00010 5943 5 Gut 0.19 protein_coding synonymous_variant LOW 441T>C Tyr147Tyr
M0176620 CHLLCBLH_00010 5968 5 Gut 0.19 protein_coding missense_variant MODERATE 466C>T Arg156Cys
M0176621 CHLLCBLH_00010 5970 5 Gut 0.19 protein_coding synonymous_variant LOW 468C>T Arg156Arg
M0176622 CHLLCBLH_00010 5976 5 Gut 0.19 protein_coding synonymous_variant LOW 474C>T Asp158Asp
M0176623 CHLLCBLH_00010 5989 5 Gut 0.19 protein_coding synonymous_variant LOW 487C>T Leu163Leu
M0176624 CHLLCBLH_00010 6075 3 Gut 0.11 protein_coding synonymous_variant LOW 573C>T Asn191Asn
M0176625 CHLLCBLH_00010 6081 3 Gut 0.11 protein_coding synonymous_variant LOW 579T>C Tyr193Tyr
M0176626 CHLLCBLH_00010 6111 3 Gut 0.11 protein_coding synonymous_variant LOW 609A>C Ala203Ala
M0176627 CHLLCBLH_00010 6141 5 Gut 0.19 protein_coding synonymous_variant LOW 639A>G Leu213Leu
M0176628 CHLLCBLH_00010 6177 4 Gut 0.15 protein_coding synonymous_variant LOW 675C>T Gly225Gly
M0176629 CHLLCBLH_00010 6237 5 Gut 0.19 protein_coding synonymous_variant LOW 735C>T Pro245Pro
M0176630 CHLLCBLH_00010 6313 5 Gut 0.19 protein_coding missense_variant MODERATE 811G>A Glu271Lys
M0176631 CHLLCBLH_00011 6362 4 Gut 0.15 protein_coding synonymous_variant LOW 45G>A Leu15Leu
M0176632 CHLLCBLH_00011 6389 5 Gut 0.19 protein_coding synonymous_variant LOW 72T>C Phe24Phe
M0176633 CHLLCBLH_00011 6428 5 Gut 0.19 protein_coding synonymous_variant LOW 111T>A Val37Val
M0176634 CHLLCBLH_00011 6443 5 Gut 0.19 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0176635 CHLLCBLH_00011 6674 4 Gut 0.15 protein_coding synonymous_variant LOW 357A>G Gln119Gln
M0176636 CHLLCBLH_00023 21240 4 Gut 0.15 protein_coding synonymous_variant LOW 357C>T Thr119Thr
M0176637 CHLLCBLH_00023 21306 10 Gut 0.37 protein_coding synonymous_variant LOW 423G>A Lys141Lys
M0176638 CHLLCBLH_00023 21339 10 Gut 0.37 protein_coding synonymous_variant LOW 456T>C Gly152Gly
M0176639 CHLLCBLH_00023 21357 10 Gut 0.37 protein_coding synonymous_variant LOW 474A>G Pro158Pro
M0176640 CHLLCBLH_00023 21375 10 Gut 0.37 protein_coding synonymous_variant LOW 492T>C Ile164Ile
M0176641 CHLLCBLH_00023 21444 10 Gut 0.37 protein_coding synonymous_variant LOW 561A>C Val187Val
M0176642 CHLLCBLH_00023 21496 9 Gut 0.33 protein_coding synonymous_variant LOW 613C>T Leu205Leu
M0176643 CHLLCBLH_00023 21552 10 Gut 0.37 protein_coding synonymous_variant LOW 669G>T Ala223Ala
M0176644 CHLLCBLH_00023 21624 10 Gut 0.37 protein_coding synonymous_variant LOW 741T>C Gly247Gly
M0176645 CHLLCBLH_00023 21645 9 Gut 0.33 protein_coding synonymous_variant LOW 762C>T Arg254Arg
M0176646 CHLLCBLH_00023 21648 9 Gut 0.33 protein_coding synonymous_variant LOW 765T>C Ser255Ser
M0176647 CHLLCBLH_00023 21660 10 Gut 0.37 protein_coding synonymous_variant LOW 777T>C Phe259Phe
M0176648 CHLLCBLH_00023 21705 10 Gut 0.37 protein_coding synonymous_variant LOW 822A>G Ser274Ser
M0176649 CHLLCBLH_00023 21741 10 Gut 0.37 protein_coding synonymous_variant LOW 858T>C Tyr286Tyr
M0176650 CHLLCBLH_00023 21744 10 Gut 0.37 protein_coding synonymous_variant LOW 861A>G Gly287Gly
M0176651 CHLLCBLH_00023 21752 10 Gut 0.37 protein_coding missense_variant MODERATE 869G>C Ser290Thr
M0176652 CHLLCBLH_00023 21810 10 Gut 0.37 protein_coding synonymous_variant LOW 927C>T Phe309Phe
M0176653 CHLLCBLH_00023 21886 8 Gut 0.30 protein_coding synonymous_variant LOW 1003C>T Leu335Leu
M0176654 CHLLCBLH_00023 21903 8 Gut 0.30 protein_coding synonymous_variant LOW 1020C>T Gly340Gly
M0176655 CHLLCBLH_00023 21918 11 Gut 0.41 protein_coding synonymous_variant LOW 1035A>G Lys345Lys
M0176656 CHLLCBLH_00023 21933 11 Gut 0.41 protein_coding synonymous_variant LOW 1050C>T Ala350Ala
M0176657 CHLLCBLH_00023 21954 11 Gut 0.41 protein_coding synonymous_variant LOW 1071C>T Gly357Gly
M0176658 CHLLCBLH_00023 22047 10 Gut 0.37 protein_coding synonymous_variant LOW 1164T>C Phe388Phe
M0176659 CHLLCBLH_00023 22071 9 Gut 0.33 protein_coding synonymous_variant LOW 1188C>T Thr396Thr
M0176660 CHLLCBLH_00023 22101 10 Gut 0.37 protein_coding synonymous_variant LOW 1218A>G Val406Val
M0176661 CHLLCBLH_00023 22110 10 Gut 0.37 protein_coding synonymous_variant LOW 1227T>C Tyr409Tyr
M0176662 CHLLCBLH_00023 22122 3 Gut 0.11 protein_coding synonymous_variant LOW 1239A>G Gln413Gln
M0176663 CHLLCBLH_00023 22137 10 Gut 0.37 protein_coding synonymous_variant LOW 1254T>C Thr418Thr
M0176664 CHLLCBLH_00023 22140 10 Gut 0.37 protein_coding synonymous_variant LOW 1257C>T Pro419Pro
M0176665 CHLLCBLH_00023 22177 11 Gut 0.41 protein_coding missense_variant MODERATE 1294A>G Ile432Val
M0176666 CHLLCBLH_00023 22194 3 Gut 0.11 protein_coding synonymous_variant LOW 1311T>C Pro437Pro
M0176667 CHLLCBLH_00023 22209 11 Gut 0.41 protein_coding synonymous_variant LOW 1326G>A Glu442Glu
M0176668 CHLLCBLH_00023 22215 3 Gut 0.11 protein_coding synonymous_variant LOW 1332C>T Ser444Ser
M0176669 CHLLCBLH_00023 22221 3 Gut 0.11 protein_coding synonymous_variant LOW 1338C>T Asp446Asp
M0176670 CHLLCBLH_00023 22231 3 Gut 0.11 protein_coding synonymous_variant LOW 1348C>T Leu450Leu
M0176671 CHLLCBLH_00023 22245 11 Gut 0.41 protein_coding synonymous_variant LOW 1362T>C Phe454Phe
M0176672 CHLLCBLH_00023 22266 9 Gut 0.33 protein_coding synonymous_variant LOW 1383T>C Tyr461Tyr
M0176673 CHLLCBLH_00023 22323 10 Gut 0.37 protein_coding synonymous_variant LOW 1440T>A Gly480Gly
M0176674 CHLLCBLH_00023 22332 10 Gut 0.37 protein_coding synonymous_variant LOW 1449T>C Asp483Asp
M0176675 CHLLCBLH_00023 22362 10 Gut 0.37 protein_coding synonymous_variant LOW 1479C>T Gly493Gly
M0176676 CHLLCBLH_00023 22365 10 Gut 0.37 protein_coding synonymous_variant LOW 1482T>C Ala494Ala
M0176677 CHLLCBLH_00023 22368 11 Gut 0.41 protein_coding synonymous_variant LOW 1485A>C Pro495Pro
M0176678 CHLLCBLH_00023 22386 11 Gut 0.41 protein_coding synonymous_variant LOW 1503C>T Arg501Arg
M0176679 CHLLCBLH_00023 22389 10 Gut 0.37 protein_coding synonymous_variant LOW 1506T>C Ile502Ile
M0176680 CHLLCBLH_00023 22449 11 Gut 0.41 protein_coding synonymous_variant LOW 1566C>T Gly522Gly
M0176681 CHLLCBLH_00023 22464 10 Gut 0.37 protein_coding synonymous_variant LOW 1581T>C Asp527Asp
M0176682 CHLLCBLH_00023 22512 11 Gut 0.41 protein_coding synonymous_variant LOW 1629T>C Tyr543Tyr
M0176683 CHLLCBLH_00023 22758 11 Gut 0.41 protein_coding synonymous_variant LOW 1875T>C Phe625Phe
M0176684 CHLLCBLH_00023 22809 11 Gut 0.41 protein_coding synonymous_variant LOW 1926T>C Tyr642Tyr
M0176685 CHLLCBLH_00023 22870 11 Gut 0.41 protein_coding missense_variant MODERATE 1987G>A Val663Ile
M0176686 CHLLCBLH_00023 22966 11 Gut 0.41 protein_coding missense_variant MODERATE 2083T>C Phe695Leu
M0176687 CHLLCBLH_00023 22989 11 Gut 0.41 protein_coding synonymous_variant LOW 2106C>T Ser702Ser
M0176688 CHLLCBLH_00023 23022 10 Gut 0.37 protein_coding synonymous_variant LOW 2139T>C Ser713Ser
M0176689 CHLLCBLH_00023 23055 3 Gut 0.11 protein_coding synonymous_variant LOW 2172C>T Val724Val
M0176690 CHLLCBLH_00023 23058 11 Gut 0.41 protein_coding synonymous_variant LOW 2175A>C Gly725Gly
M0176691 CHLLCBLH_00023 23074 11 Gut 0.41 protein_coding missense_variant MODERATE 2191G>A Asp731Asn
M0176692 CHLLCBLH_00023 23079 11 Gut 0.41 protein_coding synonymous_variant LOW 2196C>T Tyr732Tyr
M0176693 CHLLCBLH_00023 23097 11 Gut 0.41 protein_coding synonymous_variant LOW 2214G>A Gln738Gln
M0176694 CHLLCBLH_00023 23172 11 Gut 0.41 protein_coding synonymous_variant LOW 2289A>G Thr763Thr
M0176695 CHLLCBLH_00023 23199 11 Gut 0.41 protein_coding synonymous_variant LOW 2316T>C His772His
M0176696 CHLLCBLH_00023 23221 11 Gut 0.41 protein_coding synonymous_variant LOW 2338C>T Leu780Leu
M0176697 CHLLCBLH_00023 23256 11 Gut 0.41 protein_coding synonymous_variant LOW 2373A>G Pro791Pro
M0176698 CHLLCBLH_00023 23322 11 Gut 0.41 protein_coding synonymous_variant LOW 2439T>C Ala813Ala
M0176699 CHLLCBLH_00023 23346 11 Gut 0.41 protein_coding synonymous_variant LOW 2463C>T Tyr821Tyr
M0176700 CHLLCBLH_00024 24206 3 Gut 0.11 protein_coding synonymous_variant LOW 270T>G Gly90Gly
M0176701 CHLLCBLH_00024 24254 4 Gut 0.15 protein_coding synonymous_variant LOW 318C>A Ala106Ala
M0176702 CHLLCBLH_00024 24305 4 Gut 0.15 protein_coding synonymous_variant LOW 369A>T Ile123Ile
M0176703 CHLLCBLH_00024 24356 4 Gut 0.15 protein_coding synonymous_variant LOW 420C>T Asp140Asp
M0176704 CHLLCBLH_00024 24461 13 Gut 0.48 protein_coding synonymous_variant LOW 525A>G Thr175Thr
M0176705 CHLLCBLH_00024 24545 3 Gut 0.11 protein_coding synonymous_variant LOW 609C>T Ala203Ala
M0176706 CHLLCBLH_00024 24558 3 Gut 0.11 protein_coding missense_variant MODERATE 622G>A Ala208Thr
M0176707 CHLLCBLH_00024 24559 3 Gut 0.11 protein_coding missense_variant MODERATE 623C>G Ala208Gly
M0176708 CHLLCBLH_00024 24569 3 Gut 0.11 protein_coding synonymous_variant LOW 633G>A Lys211Lys
M0176709 CHLLCBLH_00024 24707 3 Gut 0.11 protein_coding synonymous_variant LOW 771T>A Ala257Ala
M0176710 CHLLCBLH_00024 24744 14 Gut 0.52 protein_coding missense_variant MODERATE 808A>G Lys270Glu
M0176711 CHLLCBLH_00024 24863 4 Gut 0.15 protein_coding synonymous_variant LOW 927C>T Tyr309Tyr
M0176712 CHLLCBLH_00024 24872 5 Gut 0.19 protein_coding synonymous_variant LOW 936A>C Ala312Ala
M0176713 CHLLCBLH_00024 25007 3 Gut 0.11 protein_coding synonymous_variant LOW 1071T>C Arg357Arg
M0176714 CHLLCBLH_00024 25073 4 Gut 0.15 protein_coding synonymous_variant LOW 1137G>A Leu379Leu
M0176715 CHLLCBLH_00024 25154 4 Gut 0.15 protein_coding synonymous_variant LOW 1218C>T Asn406Asn
M0176716 CHLLCBLH_00024 25172 3 Gut 0.11 protein_coding synonymous_variant LOW 1236C>T Arg412Arg
M0176717 CHLLCBLH_00024 25289 12 Gut 0.44 protein_coding synonymous_variant LOW 1353C>A Arg451Arg
M0176718 CHLLCBLH_00024 25344 4 Gut 0.15 protein_coding synonymous_variant LOW 1408T>C Leu470Leu
M0176719 CHLLCBLH_00022 25485 4 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4746A>G None
M0176720 CHLLCBLH_00025 25571 5 Gut 0.19 protein_coding synonymous_variant LOW 537T>G Pro179Pro
M0176721 CHLLCBLH_00025 25628 5 Gut 0.19 protein_coding synonymous_variant LOW 480A>G Leu160Leu
M0176722 CHLLCBLH_00025 25664 6 Gut 0.22 protein_coding synonymous_variant LOW 444T>C Ile148Ile
M0176723 CHLLCBLH_00025 25682 13 Gut 0.48 protein_coding synonymous_variant LOW 426T>C Ser142Ser
M0176724 CHLLCBLH_00025 25760 5 Gut 0.19 protein_coding synonymous_variant LOW 348C>T His116His
M0176725 CHLLCBLH_00025 25802 5 Gut 0.19 protein_coding synonymous_variant LOW 306C>T Pro102Pro
M0176726 CHLLCBLH_00025 25889 4 Gut 0.15 protein_coding synonymous_variant LOW 219T>C Thr73Thr
M0176727 CHLLCBLH_00025 26009 7 Gut 0.26 protein_coding synonymous_variant LOW 99C>T Val33Val
M0176728 CHLLCBLH_00025 26072 4 Gut 0.15 protein_coding synonymous_variant LOW 36G>A Thr12Thr
M0176729 CHLLCBLH_00025 26155 5 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -48C>T None
M0176730 CHLLCBLH_00025 26202 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -95G>A None
M0176731 CHLLCBLH_00025 26217 5 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -110A>G None
M0176732 CHLLCBLH_00026 26237 3 Gut 0.11 protein_coding synonymous_variant LOW 694T>C Leu232Leu
M0176733 CHLLCBLH_00026 26283 6 Gut 0.22 protein_coding synonymous_variant LOW 648T>C Phe216Phe
M0176734 CHLLCBLH_00026 26304 6 Gut 0.22 protein_coding synonymous_variant LOW 627C>G Thr209Thr
M0176735 CHLLCBLH_00026 26350 5 Gut 0.19 protein_coding missense_variant MODERATE 581T>C Ile194Thr
M0176736 CHLLCBLH_00026 26351 5 Gut 0.19 protein_coding missense_variant MODERATE 580A>G Ile194Val
M0176737 CHLLCBLH_00026 26361 5 Gut 0.19 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0176738 CHLLCBLH_00026 26392 5 Gut 0.19 protein_coding missense_variant MODERATE 539A>G His180Arg
M0176739 CHLLCBLH_00026 26502 11 Gut 0.41 protein_coding synonymous_variant LOW 429G>A Ala143Ala
M0176740 CHLLCBLH_00026 26763 9 Gut 0.33 protein_coding synonymous_variant LOW 168G>A Glu56Glu
M0176741 CHLLCBLH_00025 26931 10 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -824A>T None
M0176742 CHLLCBLH_00027 27484 3 Gut 0.11 protein_coding synonymous_variant LOW 414C>T Thr138Thr
M0176743 CHLLCBLH_00029 28299 13 Gut 0.48 protein_coding missense_variant MODERATE 307C>G Arg103Gly
M0176744 CHLLCBLH_00029 28300 13 Gut 0.48 protein_coding missense_variant MODERATE 306A>C Gln102His
M0176745 CHLLCBLH_00029 28302 13 Gut 0.48 protein_coding missense_variant MODERATE 304C>A Gln102Lys
M0176746 CHLLCBLH_00030 28784 10 Gut 0.37 protein_coding synonymous_variant LOW 147G>A Glu49Glu
M0176747 CHLLCBLH_00030 28827 10 Gut 0.37 protein_coding missense_variant MODERATE 104G>A Arg35Lys
M0176748 CHLLCBLH_00004 1269 4 Gut 0.15 protein_coding missense_variant MODERATE 18G>T Leu6Phe
M0176749 CHLLCBLH_00008 3394 4 Gut 0.15 protein_coding synonymous_variant LOW 318T>C Asn106Asn
M0176750 CHLLCBLH_00011 6482 3 Gut 0.11 protein_coding synonymous_variant LOW 165C>T Gly55Gly
M0176751 CHLLCBLH_00011 6512 3 Gut 0.11 protein_coding synonymous_variant LOW 195G>A Lys65Lys
M0176752 CHLLCBLH_00011 6525 3 Gut 0.11 protein_coding missense_variant MODERATE 208G>A Val70Ile
M0176753 CHLLCBLH_00011 6533 3 Gut 0.11 protein_coding synonymous_variant LOW 216C>T Ile72Ile
M0176754 CHLLCBLH_00011 6623 3 Gut 0.11 protein_coding synonymous_variant LOW 306A>G Val102Val
M0176755 CHLLCBLH_00011 6626 3 Gut 0.11 protein_coding synonymous_variant LOW 309T>A Val103Val
M0176756 CHLLCBLH_00016 19110 4 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4380C>T None
M0176757 CHLLCBLH_00021 19372 5 Gut 0.19 protein_coding synonymous_variant LOW 1059A>G Thr353Thr
M0176758 CHLLCBLH_00021 20129 5 Gut 0.19 protein_coding missense_variant MODERATE 302A>G Asn101Ser
M0176759 CHLLCBLH_00021 20143 5 Gut 0.19 protein_coding missense_variant MODERATE 288G>C Glu96Asp
M0176760 CHLLCBLH_00022 20606 4 Gut 0.15 protein_coding missense_variant MODERATE 134T>C Leu45Pro
M0176761 CHLLCBLH_00018 20750 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3996C>T None
M0176762 CHLLCBLH_00018 20755 6 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4001C>T None
M0176763 CHLLCBLH_00023 21201 6 Gut 0.22 protein_coding synonymous_variant LOW 318G>A Val106Val
M0176764 CHLLCBLH_00023 22095 8 Gut 0.30 protein_coding synonymous_variant LOW 1212G>A Gly404Gly
M0176765 CHLLCBLH_00023 22284 9 Gut 0.33 protein_coding synonymous_variant LOW 1401A>G Leu467Leu
M0176766 CHLLCBLH_00023 22767 9 Gut 0.33 protein_coding synonymous_variant LOW 1884C>T Pro628Pro
M0176767 CHLLCBLH_00023 22866 8 Gut 0.30 protein_coding synonymous_variant LOW 1983T>C Tyr661Tyr
M0176768 CHLLCBLH_00023 22899 6 Gut 0.22 protein_coding synonymous_variant LOW 2016A>C Ser672Ser
M0176769 CHLLCBLH_00023 22977 8 Gut 0.30 protein_coding synonymous_variant LOW 2094T>C Ile698Ile
M0176770 CHLLCBLH_00023 23034 7 Gut 0.26 protein_coding synonymous_variant LOW 2151C>T Tyr717Tyr
M0176771 CHLLCBLH_00023 23082 8 Gut 0.30 protein_coding synonymous_variant LOW 2199A>G Gly733Gly
M0176772 CHLLCBLH_00023 23091 8 Gut 0.30 protein_coding synonymous_variant LOW 2208T>C Thr736Thr
M0176773 CHLLCBLH_00023 23382 10 Gut 0.37 protein_coding synonymous_variant LOW 2499A>T Thr833Thr
M0176774 CHLLCBLH_00023 23385 10 Gut 0.37 protein_coding synonymous_variant LOW 2502C>A Thr834Thr
M0176775 CHLLCBLH_00023 23475 10 Gut 0.37 protein_coding synonymous_variant LOW 2592T>C Ile864Ile
M0176776 CHLLCBLH_00023 23557 4 Gut 0.15 protein_coding missense_variant MODERATE 2674C>T His892Tyr
M0176777 CHLLCBLH_00023 23589 5 Gut 0.19 protein_coding synonymous_variant LOW 2706C>T Tyr902Tyr
M0176778 CHLLCBLH_00023 23610 4 Gut 0.15 protein_coding synonymous_variant LOW 2727C>A Thr909Thr
M0176779 CHLLCBLH_00023 23660 4 Gut 0.15 protein_coding missense_variant MODERATE 2777T>C Val926Ala
M0176780 CHLLCBLH_00023 23753 5 Gut 0.19 protein_coding missense_variant MODERATE 2870A>G Asn957Ser
M0176781 CHLLCBLH_00023 23763 4 Gut 0.15 protein_coding synonymous_variant LOW 2880A>G Gly960Gly
M0176782 CHLLCBLH_00023 23766 5 Gut 0.19 protein_coding synonymous_variant LOW 2883T>C Leu961Leu
M0176783 CHLLCBLH_00023 23772 5 Gut 0.19 protein_coding synonymous_variant LOW 2889G>A Lys963Lys
M0176784 CHLLCBLH_00023 23775 5 Gut 0.19 protein_coding synonymous_variant LOW 2892A>C Ala964Ala
M0176785 CHLLCBLH_00023 23781 5 Gut 0.19 protein_coding synonymous_variant LOW 2898T>C Ile966Ile
M0176786 CHLLCBLH_00023 23790 5 Gut 0.19 protein_coding synonymous_variant LOW 2907G>T Ser969Ser
M0176787 CHLLCBLH_00023 23793 5 Gut 0.19 protein_coding synonymous_variant LOW 2910G>T Gly970Gly
M0176788 CHLLCBLH_00023 23814 5 Gut 0.19 protein_coding synonymous_variant LOW 2931A>G Lys977Lys
M0176789 CHLLCBLH_00016 13876 3 Gut 0.11 protein_coding synonymous_variant LOW 855G>A Gln285Gln
M0176790 CHLLCBLH_00016 14341 3 Gut 0.11 protein_coding synonymous_variant LOW 390C>T Asp130Asp
M0176791 CHLLCBLH_00017 15054 3 Gut 0.11 protein_coding synonymous_variant LOW 363T>C Arg121Arg
M0176792 CHLLCBLH_00021 19297 3 Gut 0.11 protein_coding synonymous_variant LOW 1134A>G Val378Val
M0176793 CHLLCBLH_00021 19321 3 Gut 0.11 protein_coding synonymous_variant LOW 1110G>A Thr370Thr
M0176794 CHLLCBLH_00021 19378 3 Gut 0.11 protein_coding synonymous_variant LOW 1053T>C Ile351Ile
M0176795 CHLLCBLH_00021 19405 3 Gut 0.11 protein_coding synonymous_variant LOW 1026T>A Thr342Thr
M0176796 CHLLCBLH_00021 19426 3 Gut 0.11 protein_coding synonymous_variant LOW 1005C>T Thr335Thr
M0176797 CHLLCBLH_00021 19441 3 Gut 0.11 protein_coding synonymous_variant LOW 990G>A Lys330Lys
M0176798 CHLLCBLH_00021 19456 3 Gut 0.11 protein_coding synonymous_variant LOW 975C>T Ala325Ala
M0176799 CHLLCBLH_00021 19482 3 Gut 0.11 protein_coding missense_variant MODERATE 949A>G Asn317Asp
M0176800 CHLLCBLH_00021 19483 3 Gut 0.11 protein_coding synonymous_variant LOW 948A>G Lys316Lys
M0176801 CHLLCBLH_00021 19645 3 Gut 0.11 protein_coding synonymous_variant LOW 786C>T Ile262Ile
M0176802 CHLLCBLH_00021 19735 3 Gut 0.11 protein_coding synonymous_variant LOW 696G>A Gln232Gln
M0176803 CHLLCBLH_00021 19785 3 Gut 0.11 protein_coding synonymous_variant LOW 646C>T Leu216Leu
M0176804 CHLLCBLH_00021 19864 3 Gut 0.11 protein_coding missense_variant MODERATE 567A>G Ile189Met
M0176805 CHLLCBLH_00021 19942 3 Gut 0.11 protein_coding synonymous_variant LOW 489C>T Gly163Gly
M0176806 CHLLCBLH_00021 20047 3 Gut 0.11 protein_coding synonymous_variant LOW 384C>T His128His
M0176807 CHLLCBLH_00021 20062 3 Gut 0.11 protein_coding synonymous_variant LOW 369T>C Ser123Ser
M0176808 CHLLCBLH_00021 20071 3 Gut 0.11 protein_coding synonymous_variant LOW 360G>A Leu120Leu
M0176809 CHLLCBLH_00021 20076 3 Gut 0.11 protein_coding missense_variant MODERATE 355G>A Ala119Thr
M0176810 CHLLCBLH_00021 20095 3 Gut 0.11 protein_coding synonymous_variant LOW 336A>G Arg112Arg
M0176811 CHLLCBLH_00021 20099 3 Gut 0.11 protein_coding missense_variant MODERATE 332G>T Cys111Phe
M0176812 CHLLCBLH_00021 20106 3 Gut 0.11 protein_coding missense_variant MODERATE 325T>C Ser109Pro
M0176813 CHLLCBLH_00021 20218 3 Gut 0.11 protein_coding synonymous_variant LOW 213T>C Phe71Phe
M0176814 CHLLCBLH_00021 20221 3 Gut 0.11 protein_coding synonymous_variant LOW 210A>G Glu70Glu
M0176815 CHLLCBLH_00021 20242 3 Gut 0.11 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0176816 CHLLCBLH_00021 20248 3 Gut 0.11 protein_coding synonymous_variant LOW 183G>A Ala61Ala
M0176817 CHLLCBLH_00021 20269 3 Gut 0.11 protein_coding synonymous_variant LOW 162C>T Ile54Ile
M0176818 CHLLCBLH_00021 20290 3 Gut 0.11 protein_coding synonymous_variant LOW 141A>G Gln47Gln
M0176819 CHLLCBLH_00021 20304 3 Gut 0.11 protein_coding synonymous_variant LOW 127C>T Leu43Leu
M0176820 CHLLCBLH_00021 20317 3 Gut 0.11 protein_coding synonymous_variant LOW 114C>A Ser38Ser
M0176821 CHLLCBLH_00021 20320 3 Gut 0.11 protein_coding synonymous_variant LOW 111C>T Phe37Phe
M0176822 CHLLCBLH_00021 20359 3 Gut 0.11 protein_coding synonymous_variant LOW 72G>A Val24Val
M0176823 CHLLCBLH_00021 20362 3 Gut 0.11 protein_coding synonymous_variant LOW 69A>G Leu23Leu
M0176824 CHLLCBLH_00021 20365 3 Gut 0.11 protein_coding synonymous_variant LOW 66G>A Ala22Ala
M0176825 CHLLCBLH_00021 20422 3 Gut 0.11 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0176826 CHLLCBLH_00018 20434 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3680C>T None
M0176827 CHLLCBLH_00018 20453 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3699A>G None
M0176828 CHLLCBLH_00018 20484 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3730C>T None
M0176829 CHLLCBLH_00018 20487 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3733T>C None
M0176830 CHLLCBLH_00018 20490 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3736T>A None
M0176831 CHLLCBLH_00022 20660 3 Gut 0.11 protein_coding missense_variant MODERATE 80G>A Gly27Asp
M0176832 CHLLCBLH_00022 20662 3 Gut 0.11 protein_coding synonymous_variant LOW 78A>G Gln26Gln
M0176833 CHLLCBLH_00022 20664 3 Gut 0.11 protein_coding stop_gained HIGH 76C>T Gln26*
M0176834 CHLLCBLH_00022 20671 3 Gut 0.11 protein_coding synonymous_variant LOW 69C>T Ser23Ser
M0176835 CHLLCBLH_00022 20699 3 Gut 0.11 protein_coding missense_variant MODERATE 41C>T Pro14Leu
M0176836 CHLLCBLH_00022 20717 3 Gut 0.11 protein_coding missense_variant MODERATE 23T>C Ile8Thr
M0176837 CHLLCBLH_00018 20745 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3991T>C None
M0176838 CHLLCBLH_00018 20746 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3992C>T None
M0176839 CHLLCBLH_00018 20748 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3994C>T None
M0176840 CHLLCBLH_00023 20925 3 Gut 0.11 protein_coding synonymous_variant LOW 42T>C Val14Val
M0176841 CHLLCBLH_00023 21034 3 Gut 0.11 protein_coding missense_variant MODERATE 151G>A Val51Ile
M0176842 CHLLCBLH_00023 21225 5 Gut 0.19 protein_coding synonymous_variant LOW 342A>G Lys114Lys
M0176843 CHLLCBLH_00023 21234 5 Gut 0.19 protein_coding synonymous_variant LOW 351A>G Ser117Ser
M0176844 CHLLCBLH_00023 21807 5 Gut 0.19 protein_coding synonymous_variant LOW 924C>T Asp308Asp
M0176845 CHLLCBLH_00023 21825 5 Gut 0.19 protein_coding synonymous_variant LOW 942A>G Ser314Ser
M0176846 CHLLCBLH_00023 22775 5 Gut 0.19 protein_coding missense_variant MODERATE 1892G>A Ser631Asn
M0176847 CHLLCBLH_00023 23420 5 Gut 0.19 protein_coding missense_variant MODERATE 2537A>G Lys846Arg
M0176848 CHLLCBLH_00023 23442 4 Gut 0.15 protein_coding synonymous_variant LOW 2559C>T Gly853Gly
M0176849 CHLLCBLH_00024 24481 5 Gut 0.19 protein_coding missense_variant MODERATE 545T>C Leu182Pro
M0176850 CHLLCBLH_00026 26760 6 Gut 0.22 protein_coding synonymous_variant LOW 171G>C Leu57Leu
M0176851 CHLLCBLH_00027 27259 7 Gut 0.26 protein_coding synonymous_variant LOW 639G>A Gly213Gly
M0176852 CHLLCBLH_00027 27607 5 Gut 0.19 protein_coding synonymous_variant LOW 291A>G Lys97Lys
M0176853 CHLLCBLH_00027 27625 5 Gut 0.19 protein_coding synonymous_variant LOW 273C>T Asp91Asp
M0176854 CHLLCBLH_00027 27673 7 Gut 0.26 protein_coding synonymous_variant LOW 225C>T Gly75Gly
M0176855 CHLLCBLH_00027 27679 7 Gut 0.26 protein_coding synonymous_variant LOW 219A>G Gln73Gln
M0176856 CHLLCBLH_00027 27700 7 Gut 0.26 protein_coding synonymous_variant LOW 198G>A Ala66Ala
M0176857 CHLLCBLH_00027 27703 7 Gut 0.26 protein_coding synonymous_variant LOW 195G>A Ala65Ala
M0176858 CHLLCBLH_00027 27745 7 Gut 0.26 protein_coding synonymous_variant LOW 153T>C Gly51Gly
M0176859 CHLLCBLH_00027 27760 7 Gut 0.26 protein_coding synonymous_variant LOW 138A>G Leu46Leu
M0176860 CHLLCBLH_00027 27841 7 Gut 0.26 protein_coding synonymous_variant LOW 57T>C Ser19Ser
M0176861 CHLLCBLH_00028 27949 5 Gut 0.19 protein_coding missense_variant MODERATE 337G>A Ala113Thr
M0176862 CHLLCBLH_00028 27998 7 Gut 0.26 protein_coding synonymous_variant LOW 288A>T Ile96Ile
M0176863 CHLLCBLH_00028 28001 7 Gut 0.26 protein_coding synonymous_variant LOW 285A>G Leu95Leu
M0176864 CHLLCBLH_00028 28039 7 Gut 0.26 protein_coding missense_variant MODERATE 247G>A Val83Met
M0176865 CHLLCBLH_00028 28046 7 Gut 0.26 protein_coding synonymous_variant LOW 240T>C Ile80Ile
M0176866 CHLLCBLH_00028 28064 7 Gut 0.26 protein_coding synonymous_variant LOW 222A>T Ala74Ala
M0176867 CHLLCBLH_00028 28074 7 Gut 0.26 protein_coding missense_variant MODERATE 212G>A Gly71Glu
M0176868 CHLLCBLH_00028 28093 6 Gut 0.22 protein_coding missense_variant MODERATE 193A>G Thr65Ala
M0176869 CHLLCBLH_00028 28102 7 Gut 0.26 protein_coding missense_variant MODERATE 184G>A Ala62Thr
M0176870 CHLLCBLH_00028 28153 6 Gut 0.22 protein_coding missense_variant MODERATE 133C>T Arg45Cys
M0176871 CHLLCBLH_00028 28158 7 Gut 0.26 protein_coding missense_variant MODERATE 128G>A Gly43Glu
M0176872 CHLLCBLH_00028 28178 7 Gut 0.26 protein_coding synonymous_variant LOW 108T>C Thr36Thr
M0176873 CHLLCBLH_00028 28205 7 Gut 0.26 protein_coding synonymous_variant LOW 81T>C Phe27Phe
M0176874 CHLLCBLH_00028 28237 7 Gut 0.26 protein_coding synonymous_variant LOW 49T>C Leu17Leu
M0176875 CHLLCBLH_00029 28250 7 Gut 0.26 protein_coding stop_lost&splice_region_variant HIGH 356A>G Ter119Trpext*?
M0176876 CHLLCBLH_00029 28259 7 Gut 0.26 protein_coding missense_variant MODERATE 347G>A Cys116Tyr
M0176877 CHLLCBLH_00028 28281 6 Gut 0.22 protein_coding missense_variant MODERATE 5C>T Pro2Leu
M0176878 CHLLCBLH_00029 28303 7 Gut 0.26 protein_coding synonymous_variant LOW 303C>T Arg101Arg
M0176879 CHLLCBLH_00029 28321 7 Gut 0.26 protein_coding synonymous_variant LOW 285G>A Val95Val
M0176880 CHLLCBLH_00029 28348 6 Gut 0.22 protein_coding synonymous_variant LOW 258G>A Pro86Pro
M0176881 CHLLCBLH_00029 28351 7 Gut 0.26 protein_coding synonymous_variant LOW 255A>G Thr85Thr
M0176882 CHLLCBLH_00029 28454 7 Gut 0.26 protein_coding missense_variant MODERATE 152T>C Val51Ala
M0176883 CHLLCBLH_00029 28492 7 Gut 0.26 protein_coding synonymous_variant LOW 114T>C Thr38Thr
M0176884 CHLLCBLH_00029 28510 7 Gut 0.26 protein_coding missense_variant MODERATE 96G>T Leu32Phe
M0176885 CHLLCBLH_00029 28512 7 Gut 0.26 protein_coding synonymous_variant LOW 94T>C Leu32Leu
M0176886 CHLLCBLH_00029 28513 5 Gut 0.19 protein_coding synonymous_variant LOW 93A>T Ile31Ile
M0176887 CHLLCBLH_00029 28516 7 Gut 0.26 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0176888 CHLLCBLH_00029 28570 7 Gut 0.26 protein_coding synonymous_variant LOW 36G>A Gly12Gly
M0176889 CHLLCBLH_00025 28616 7 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -2509A>G None
M0176890 CHLLCBLH_00030 28658 7 Gut 0.26 protein_coding synonymous_variant LOW 273T>C Ala91Ala
M0176891 CHLLCBLH_00030 28670 7 Gut 0.26 protein_coding synonymous_variant LOW 261G>A Glu87Glu
M0176892 CHLLCBLH_00030 28682 7 Gut 0.26 protein_coding missense_variant MODERATE 249G>C Gln83His
M0176893 CHLLCBLH_00030 28695 7 Gut 0.26 protein_coding missense_variant MODERATE 236T>C Val79Ala
M0176894 CHLLCBLH_00030 28697 7 Gut 0.26 protein_coding synonymous_variant LOW 234C>T Phe78Phe
M0176895 CHLLCBLH_00030 28727 7 Gut 0.26 protein_coding synonymous_variant LOW 204C>T Ala68Ala
M0176896 CHLLCBLH_00023 21932 4 Gut 0.15 protein_coding missense_variant MODERATE 1049C>T Ala350Val
M0176897 CHLLCBLH_00024 24611 3 Gut 0.11 protein_coding synonymous_variant LOW 675C>T Thr225Thr
M0176898 CHLLCBLH_00024 25226 3 Gut 0.11 protein_coding synonymous_variant LOW 1290C>A Ile430Ile
M0176899 CHLLCBLH_00026 26331 3 Gut 0.11 protein_coding synonymous_variant LOW 600T>C Gly200Gly
M0176900 CHLLCBLH_00026 26529 3 Gut 0.11 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0176901 CHLLCBLH_00026 26586 3 Gut 0.11 protein_coding synonymous_variant LOW 345G>A Val115Val
M0176902 CHLLCBLH_00026 26595 3 Gut 0.11 protein_coding synonymous_variant LOW 336T>G Ala112Ala
M0176903 CHLLCBLH_00026 26614 3 Gut 0.11 protein_coding missense_variant MODERATE 317A>G Asn106Ser
M0176904 CHLLCBLH_00026 26658 3 Gut 0.11 protein_coding synonymous_variant LOW 273T>C Ala91Ala
M0176905 CHLLCBLH_00026 26668 3 Gut 0.11 protein_coding missense_variant MODERATE 263T>C Val88Ala
M0176906 CHLLCBLH_00026 26767 3 Gut 0.11 protein_coding missense_variant MODERATE 164C>T Thr55Ile
M0176907 CHLLCBLH_00026 26768 3 Gut 0.11 protein_coding missense_variant MODERATE 163A>G Thr55Ala
M0176908 CHLLCBLH_00026 26787 3 Gut 0.11 protein_coding synonymous_variant LOW 144T>G Thr48Thr
M0176909 CHLLCBLH_00026 26800 3 Gut 0.11 protein_coding missense_variant MODERATE 131T>A Leu44Gln
M0176910 CHLLCBLH_00026 26808 3 Gut 0.11 protein_coding synonymous_variant LOW 123C>T Arg41Arg
M0176911 CHLLCBLH_00026 26820 3 Gut 0.11 protein_coding synonymous_variant LOW 111T>C Gly37Gly
M0176912 CHLLCBLH_00026 26826 3 Gut 0.11 protein_coding synonymous_variant LOW 105C>T Asp35Asp
M0176913 CHLLCBLH_00026 26844 3 Gut 0.11 protein_coding synonymous_variant LOW 87A>G Glu29Glu
M0176914 CHLLCBLH_00026 26859 3 Gut 0.11 protein_coding synonymous_variant LOW 72T>C Arg24Arg
M0176915 CHLLCBLH_00026 26898 3 Gut 0.11 protein_coding synonymous_variant LOW 33T>C Asp11Asp
M0176916 CHLLCBLH_00026 26907 3 Gut 0.11 protein_coding synonymous_variant LOW 24C>G Leu8Leu
M0176917 CHLLCBLH_00026 26913 3 Gut 0.11 protein_coding synonymous_variant LOW 18A>G Lys6Lys
M0176918 CHLLCBLH_00026 26922 3 Gut 0.11 protein_coding synonymous_variant LOW 9T>C Ser3Ser
M0176919 CHLLCBLH_00025 26933 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -826G>A None
M0176920 CHLLCBLH_00025 26946 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -839A>C None
M0176921 CHLLCBLH_00023 21900 3 Gut 0.11 protein_coding synonymous_variant LOW 1017C>T Gly339Gly
M0176922 CHLLCBLH_00023 21906 3 Gut 0.11 protein_coding synonymous_variant LOW 1023C>T Asn341Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term