Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C770
  Reference Plasmid   NZ_CP059412.1
  Reference Plasmid Size   20435
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0176923 JMECIOGM_00005 67 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4775G>A None
M0176924 JMECIOGM_00005 91 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4751A>G None
M0176925 JMECIOGM_00005 133 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4709C>T None
M0176926 JMECIOGM_00005 382 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4460G>A None
M0176927 JMECIOGM_00005 437 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4405G>A None
M0176928 JMECIOGM_00001 717 12 Gut 0.36 protein_coding synonymous_variant LOW 720C>T Gly240Gly
M0176929 JMECIOGM_00001 795 17 Gut 0.52 protein_coding synonymous_variant LOW 642T>C Ser214Ser
M0176930 JMECIOGM_00001 810 12 Gut 0.36 protein_coding synonymous_variant LOW 627G>A Gln209Gln
M0176931 JMECIOGM_00001 861 17 Gut 0.52 protein_coding synonymous_variant LOW 576G>T Val192Val
M0176932 JMECIOGM_00001 873 12 Gut 0.36 protein_coding synonymous_variant LOW 564G>A Thr188Thr
M0176933 JMECIOGM_00001 1466 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -30A>G None
M0176934 JMECIOGM_00001 1934 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -498C>T None
M0176935 JMECIOGM_00001 2072 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -636A>G None
M0176936 JMECIOGM_00002 2396 10 Gut 0.30 protein_coding synonymous_variant LOW 36G>A Leu12Leu
M0176937 JMECIOGM_00002 2423 10 Gut 0.30 protein_coding synonymous_variant LOW 9G>A Leu3Leu
M0176938 JMECIOGM_00003 2857 17 Gut 0.52 protein_coding synonymous_variant LOW 978A>G Pro326Pro
M0176939 JMECIOGM_00003 2989 17 Gut 0.52 protein_coding synonymous_variant LOW 846T>C Asn282Asn
M0176940 JMECIOGM_00003 3046 12 Gut 0.36 protein_coding synonymous_variant LOW 789G>A Glu263Glu
M0176941 JMECIOGM_00003 3253 12 Gut 0.36 protein_coding synonymous_variant LOW 582G>A Glu194Glu
M0176942 JMECIOGM_00003 3295 12 Gut 0.36 protein_coding synonymous_variant LOW 540A>T Pro180Pro
M0176943 JMECIOGM_00003 3424 18 Gut 0.55 protein_coding synonymous_variant LOW 411A>G Thr137Thr
M0176944 JMECIOGM_00003 3438 12 Gut 0.36 protein_coding missense_variant MODERATE 397G>A Ala133Thr
M0176945 JMECIOGM_00003 3616 12 Gut 0.36 protein_coding synonymous_variant LOW 219C>T Gly73Gly
M0176946 JMECIOGM_00003 3709 12 Gut 0.36 protein_coding synonymous_variant LOW 126T>C Ser42Ser
M0176947 JMECIOGM_00003 3801 12 Gut 0.36 protein_coding missense_variant MODERATE 34A>G Asn12Asp
M0176948 JMECIOGM_00001 3847 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -2411C>T None
M0176949 JMECIOGM_00001 3886 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -2450T>C None
M0176950 JMECIOGM_00001 3924 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -2488C>T None
M0176951 JMECIOGM_00004 4005 12 Gut 0.36 protein_coding synonymous_variant LOW 369G>A Gly123Gly
M0176952 JMECIOGM_00004 4173 13 Gut 0.39 protein_coding synonymous_variant LOW 201T>G Ser67Ser
M0176953 JMECIOGM_00001 4381 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -2945A>T None
M0176954 JMECIOGM_00001 4389 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -2953A>G None
M0176955 JMECIOGM_00001 4391 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -2955C>G None
M0176956 JMECIOGM_00001 4817 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3381G>A None
M0176957 JMECIOGM_00005 4862 10 Gut 0.30 protein_coding synonymous_variant LOW 21T>C Arg7Arg
M0176958 JMECIOGM_00005 4876 10 Gut 0.30 protein_coding missense_variant MODERATE 35A>G Lys12Arg
M0176959 JMECIOGM_00005 4958 12 Gut 0.36 protein_coding synonymous_variant LOW 117A>G Leu39Leu
M0176960 JMECIOGM_00005 5480 22 Gut 0.67 protein_coding synonymous_variant LOW 639A>G Leu213Leu
M0176961 JMECIOGM_00005 6014 22 Gut 0.67 protein_coding synonymous_variant LOW 1173A>G Gln391Gln
M0176962 JMECIOGM_00001 6389 20 Gut 0.61 protein_coding upstream_gene_variant MODIFIER -4953C>T None
M0176963 JMECIOGM_00006 7079 20 Gut 0.61 protein_coding stop_gained HIGH 599T>A Leu200*
M0176964 JMECIOGM_00007 7572 21 Gut 0.64 protein_coding synonymous_variant LOW 1416G>A Thr472Thr
M0176965 JMECIOGM_00007 8312 21 Gut 0.64 protein_coding missense_variant MODERATE 676G>T Ala226Ser
M0176966 JMECIOGM_00007 8496 22 Gut 0.67 protein_coding synonymous_variant LOW 492C>T His164His
M0176967 JMECIOGM_00007 8640 21 Gut 0.64 protein_coding synonymous_variant LOW 348C>T Asn116Asn
M0176968 JMECIOGM_00007 8778 21 Gut 0.64 protein_coding synonymous_variant LOW 210A>G Thr70Thr
M0176969 JMECIOGM_00008 9300 12 Gut 0.36 protein_coding synonymous_variant LOW 2979T>C Asp993Asp
M0176970 JMECIOGM_00008 9597 14 Gut 0.42 protein_coding synonymous_variant LOW 2682A>G Lys894Lys
M0176971 JMECIOGM_00008 9606 19 Gut 0.58 protein_coding synonymous_variant LOW 2673G>A Gln891Gln
M0176972 JMECIOGM_00008 9714 23 Gut 0.70 protein_coding synonymous_variant LOW 2565G>A Glu855Glu
M0176973 JMECIOGM_00008 10011 19 Gut 0.58 protein_coding synonymous_variant LOW 2268T>C Tyr756Tyr
M0176974 JMECIOGM_00008 10140 19 Gut 0.58 protein_coding synonymous_variant LOW 2139A>G Leu713Leu
M0176975 JMECIOGM_00008 10335 19 Gut 0.58 protein_coding synonymous_variant LOW 1944A>G Gly648Gly
M0176976 JMECIOGM_00008 10791 19 Gut 0.58 protein_coding synonymous_variant LOW 1488C>A Gly496Gly
M0176977 JMECIOGM_00008 10809 19 Gut 0.58 protein_coding synonymous_variant LOW 1470A>G Gln490Gln
M0176978 JMECIOGM_00008 11082 14 Gut 0.42 protein_coding synonymous_variant LOW 1197T>C Thr399Thr
M0176979 JMECIOGM_00008 11130 19 Gut 0.58 protein_coding synonymous_variant LOW 1149T>G Ser383Ser
M0176980 JMECIOGM_00008 11196 19 Gut 0.58 protein_coding synonymous_variant LOW 1083C>T Gly361Gly
M0176981 JMECIOGM_00008 11565 17 Gut 0.52 protein_coding synonymous_variant LOW 714A>G Glu238Glu
M0176982 JMECIOGM_00008 11571 17 Gut 0.52 protein_coding synonymous_variant LOW 708A>G Gln236Gln
M0176983 JMECIOGM_00008 12128 18 Gut 0.55 protein_coding missense_variant MODERATE 151G>A Val51Ile
M0176984 JMECIOGM_00007 12402 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3415C>T None
M0176985 JMECIOGM_00007 12407 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3420G>A None
M0176986 JMECIOGM_00007 12414 17 Gut 0.52 protein_coding upstream_gene_variant MODIFIER -3427G>A None
M0176987 JMECIOGM_00007 12417 13 Gut 0.39 protein_coding upstream_gene_variant MODIFIER -3430A>G None
M0176988 JMECIOGM_00009 12445 17 Gut 0.52 protein_coding missense_variant MODERATE 23T>C Ile8Thr
M0176989 JMECIOGM_00009 12463 17 Gut 0.52 protein_coding missense_variant MODERATE 41C>T Pro14Leu
M0176990 JMECIOGM_00009 12498 17 Gut 0.52 protein_coding stop_gained HIGH 76C>T Gln26*
M0176991 JMECIOGM_00009 12500 17 Gut 0.52 protein_coding synonymous_variant LOW 78A>G Gln26Gln
M0176992 JMECIOGM_00009 12502 17 Gut 0.52 protein_coding missense_variant MODERATE 80G>A Gly27Asp
M0176993 JMECIOGM_00009 12551 17 Gut 0.52 protein_coding synonymous_variant LOW 129C>T Asn43Asn
M0176994 JMECIOGM_00009 12556 17 Gut 0.52 protein_coding missense_variant MODERATE 134T>C Leu45Pro
M0176995 JMECIOGM_00009 12566 17 Gut 0.52 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0176996 JMECIOGM_00009 12568 17 Gut 0.52 protein_coding missense_variant MODERATE 146A>G Lys49Arg
M0176997 JMECIOGM_00009 12572 13 Gut 0.39 protein_coding synonymous_variant LOW 150A>G Thr50Thr
M0176998 JMECIOGM_00009 12573 17 Gut 0.52 protein_coding missense_variant MODERATE 151T>G Tyr51Asp
M0176999 JMECIOGM_00009 12592 17 Gut 0.52 protein_coding missense_variant MODERATE 170A>T Asn57Ile
M0177000 JMECIOGM_00009 12598 17 Gut 0.52 protein_coding missense_variant MODERATE 176A>G Asn59Ser
M0177001 JMECIOGM_00009 12601 17 Gut 0.52 protein_coding missense_variant MODERATE 179T>C Phe60Ser
M0177002 JMECIOGM_00009 12608 17 Gut 0.52 protein_coding synonymous_variant LOW 186A>G Arg62Arg
M0177003 JMECIOGM_00009 12609 17 Gut 0.52 protein_coding synonymous_variant LOW 187T>C Leu63Leu
M0177004 JMECIOGM_00007 12672 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3685A>T None
M0177005 JMECIOGM_00007 12675 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3688A>G None
M0177006 JMECIOGM_00007 12678 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3691G>A None
M0177007 JMECIOGM_00007 12709 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3722T>C None
M0177008 JMECIOGM_00007 12728 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -3741G>A None
M0177009 JMECIOGM_00010 12740 15 Gut 0.45 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0177010 JMECIOGM_00010 12797 19 Gut 0.58 protein_coding synonymous_variant LOW 66G>A Ala22Ala
M0177011 JMECIOGM_00010 12800 15 Gut 0.45 protein_coding synonymous_variant LOW 69A>G Leu23Leu
M0177012 JMECIOGM_00010 12803 15 Gut 0.45 protein_coding synonymous_variant LOW 72G>A Val24Val
M0177013 JMECIOGM_00010 12842 19 Gut 0.58 protein_coding synonymous_variant LOW 111C>T Phe37Phe
M0177014 JMECIOGM_00010 12845 19 Gut 0.58 protein_coding synonymous_variant LOW 114C>A Ser38Ser
M0177015 JMECIOGM_00010 12858 19 Gut 0.58 protein_coding synonymous_variant LOW 127C>T Leu43Leu
M0177016 JMECIOGM_00010 12872 19 Gut 0.58 protein_coding synonymous_variant LOW 141A>G Gln47Gln
M0177017 JMECIOGM_00010 12893 19 Gut 0.58 protein_coding synonymous_variant LOW 162C>T Ile54Ile
M0177018 JMECIOGM_00010 12914 19 Gut 0.58 protein_coding synonymous_variant LOW 183G>A Ala61Ala
M0177019 JMECIOGM_00010 12920 19 Gut 0.58 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0177020 JMECIOGM_00010 12941 19 Gut 0.58 protein_coding synonymous_variant LOW 210A>G Glu70Glu
M0177021 JMECIOGM_00010 12944 19 Gut 0.58 protein_coding synonymous_variant LOW 213T>C Phe71Phe
M0177022 JMECIOGM_00010 13019 19 Gut 0.58 protein_coding missense_variant MODERATE 288G>T Glu96Asp
M0177023 JMECIOGM_00010 13033 19 Gut 0.58 protein_coding missense_variant MODERATE 302A>G Asn101Ser
M0177024 JMECIOGM_00010 13056 19 Gut 0.58 protein_coding missense_variant MODERATE 325T>C Ser109Pro
M0177025 JMECIOGM_00010 13063 19 Gut 0.58 protein_coding missense_variant MODERATE 332G>T Cys111Phe
M0177026 JMECIOGM_00010 13067 19 Gut 0.58 protein_coding synonymous_variant LOW 336A>G Arg112Arg
M0177027 JMECIOGM_00010 13115 19 Gut 0.58 protein_coding synonymous_variant LOW 384C>T His128His
M0177028 JMECIOGM_00010 13220 19 Gut 0.58 protein_coding synonymous_variant LOW 489C>T Gly163Gly
M0177029 JMECIOGM_00010 13298 19 Gut 0.58 protein_coding missense_variant MODERATE 567A>G Ile189Met
M0177030 JMECIOGM_00010 13377 19 Gut 0.58 protein_coding synonymous_variant LOW 646C>T Leu216Leu
M0177031 JMECIOGM_00010 13427 19 Gut 0.58 protein_coding synonymous_variant LOW 696G>A Gln232Gln
M0177032 JMECIOGM_00010 13517 19 Gut 0.58 protein_coding synonymous_variant LOW 786C>T Ile262Ile
M0177033 JMECIOGM_00010 13679 19 Gut 0.58 protein_coding synonymous_variant LOW 948A>G Lys316Lys
M0177034 JMECIOGM_00010 13680 19 Gut 0.58 protein_coding missense_variant MODERATE 949A>G Asn317Asp
M0177035 JMECIOGM_00010 13706 19 Gut 0.58 protein_coding synonymous_variant LOW 975C>T Ala325Ala
M0177036 JMECIOGM_00010 13721 19 Gut 0.58 protein_coding synonymous_variant LOW 990G>A Lys330Lys
M0177037 JMECIOGM_00010 13736 19 Gut 0.58 protein_coding synonymous_variant LOW 1005C>T Thr335Thr
M0177038 JMECIOGM_00010 13790 19 Gut 0.58 protein_coding synonymous_variant LOW 1059A>G Thr353Thr
M0177039 JMECIOGM_00010 13841 19 Gut 0.58 protein_coding synonymous_variant LOW 1110G>A Thr370Thr
M0177040 JMECIOGM_00010 13865 19 Gut 0.58 protein_coding synonymous_variant LOW 1134A>G Val378Val
M0177041 JMECIOGM_00007 13928 15 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4941A>G None
M0177042 JMECIOGM_00007 13936 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -4949C>T None
M0177043 JMECIOGM_00007 13949 15 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4962T>C None
M0177044 JMECIOGM_00007 13983 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4996G>A None
M0177045 JMECIOGM_00008 13993 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -1715A>T None
M0177046 JMECIOGM_00008 14000 19 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -1722T>C None
M0177047 JMECIOGM_00008 14001 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -1723G>A None
M0177048 JMECIOGM_00008 14002 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -1724G>A None
M0177049 JMECIOGM_00008 14018 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -1740G>A None
M0177050 JMECIOGM_00008 14033 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1755C>T None
M0177051 JMECIOGM_00008 14052 18 Gut 0.55 protein_coding upstream_gene_variant MODIFIER -1774G>A None
M0177052 JMECIOGM_00008 14061 18 Gut 0.55 protein_coding upstream_gene_variant MODIFIER -1783G>A None
M0177053 JMECIOGM_00008 14085 14 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -1807T>C None
M0177054 JMECIOGM_00008 14130 14 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -1852T>C None
M0177055 JMECIOGM_00008 14792 13 Gut 0.39 protein_coding upstream_gene_variant MODIFIER -2514T>C None
M0177056 JMECIOGM_00011 14906 14 Gut 0.42 protein_coding synonymous_variant LOW 57C>T Arg19Arg
M0177057 JMECIOGM_00011 14924 14 Gut 0.42 protein_coding synonymous_variant LOW 75C>T Gly25Gly
M0177058 JMECIOGM_00011 15005 14 Gut 0.42 protein_coding synonymous_variant LOW 156C>T Ala52Ala
M0177059 JMECIOGM_00011 15014 14 Gut 0.42 protein_coding synonymous_variant LOW 165G>A Gln55Gln
M0177060 JMECIOGM_00011 15023 14 Gut 0.42 protein_coding synonymous_variant LOW 174C>T Ser58Ser
M0177061 JMECIOGM_00011 15062 14 Gut 0.42 protein_coding synonymous_variant LOW 213G>A Leu71Leu
M0177062 JMECIOGM_00011 15083 14 Gut 0.42 protein_coding synonymous_variant LOW 234A>G Ser78Ser
M0177063 JMECIOGM_00011 15098 13 Gut 0.39 protein_coding synonymous_variant LOW 249G>A Ala83Ala
M0177064 JMECIOGM_00011 15131 13 Gut 0.39 protein_coding synonymous_variant LOW 282T>C Gly94Gly
M0177065 JMECIOGM_00011 15155 14 Gut 0.42 protein_coding synonymous_variant LOW 306G>A Thr102Thr
M0177066 JMECIOGM_00011 15215 14 Gut 0.42 protein_coding synonymous_variant LOW 366C>T Arg122Arg
M0177067 JMECIOGM_00011 15221 14 Gut 0.42 protein_coding synonymous_variant LOW 372T>A Ala124Ala
M0177068 JMECIOGM_00011 15287 3 Gut 0.09 protein_coding synonymous_variant LOW 438T>C Gly146Gly
M0177069 JMECIOGM_00011 15288 10 Gut 0.30 protein_coding missense_variant MODERATE 439A>T Thr147Ser
M0177070 JMECIOGM_00011 15317 10 Gut 0.30 protein_coding synonymous_variant LOW 468A>G Lys156Lys
M0177071 JMECIOGM_00011 15320 10 Gut 0.30 protein_coding synonymous_variant LOW 471T>C Asp157Asp
M0177072 JMECIOGM_00011 15343 10 Gut 0.30 protein_coding missense_variant MODERATE 494A>G Glu165Gly
M0177073 JMECIOGM_00011 15353 10 Gut 0.30 protein_coding synonymous_variant LOW 504T>C Tyr168Tyr
M0177074 JMECIOGM_00011 15380 10 Gut 0.30 protein_coding synonymous_variant LOW 531T>C Asn177Asn
M0177075 JMECIOGM_00011 15440 10 Gut 0.30 protein_coding synonymous_variant LOW 591A>G Leu197Leu
M0177076 JMECIOGM_00011 15467 10 Gut 0.30 protein_coding synonymous_variant LOW 618A>T Ala206Ala
M0177077 JMECIOGM_00011 15488 10 Gut 0.30 protein_coding synonymous_variant LOW 639A>G Glu213Glu
M0177078 JMECIOGM_00011 15492 10 Gut 0.30 protein_coding synonymous_variant LOW 643T>C Leu215Leu
M0177079 JMECIOGM_00011 15494 10 Gut 0.30 protein_coding synonymous_variant LOW 645A>G Leu215Leu
M0177080 JMECIOGM_00011 15503 10 Gut 0.30 protein_coding synonymous_variant LOW 654T>A Pro218Pro
M0177081 JMECIOGM_00011 15531 10 Gut 0.30 protein_coding synonymous_variant LOW 682T>C Leu228Leu
M0177082 JMECIOGM_00011 15581 14 Gut 0.42 protein_coding synonymous_variant LOW 732C>T Arg244Arg
M0177083 JMECIOGM_00011 15587 14 Gut 0.42 protein_coding synonymous_variant LOW 738A>G Glu246Glu
M0177084 JMECIOGM_00011 15590 10 Gut 0.30 protein_coding synonymous_variant LOW 741C>T Tyr247Tyr
M0177085 JMECIOGM_00011 15594 14 Gut 0.42 protein_coding missense_variant MODERATE 745A>G Ile249Val
M0177086 JMECIOGM_00011 15620 14 Gut 0.42 protein_coding synonymous_variant LOW 771T>C Arg257Arg
M0177087 JMECIOGM_00011 15628 14 Gut 0.42 protein_coding missense_variant MODERATE 779T>A Phe260Tyr
M0177088 JMECIOGM_00011 15629 14 Gut 0.42 protein_coding synonymous_variant LOW 780T>C Phe260Phe
M0177089 JMECIOGM_00011 15653 14 Gut 0.42 protein_coding synonymous_variant LOW 804T>C Asp268Asp
M0177090 JMECIOGM_00011 15669 14 Gut 0.42 protein_coding synonymous_variant LOW 820T>C Leu274Leu
M0177091 JMECIOGM_00011 15689 14 Gut 0.42 protein_coding synonymous_variant LOW 840T>C Arg280Arg
M0177092 JMECIOGM_00011 15695 14 Gut 0.42 protein_coding synonymous_variant LOW 846A>G Thr282Thr
M0177093 JMECIOGM_00011 15716 15 Gut 0.45 protein_coding synonymous_variant LOW 867C>T Ser289Ser
M0177094 JMECIOGM_00011 15755 15 Gut 0.45 protein_coding synonymous_variant LOW 906A>C Gly302Gly
M0177095 JMECIOGM_00011 15815 15 Gut 0.45 protein_coding synonymous_variant LOW 966C>T Phe322Phe
M0177096 JMECIOGM_00011 15818 15 Gut 0.45 protein_coding synonymous_variant LOW 969A>G Glu323Glu
M0177097 JMECIOGM_00011 15821 15 Gut 0.45 protein_coding synonymous_variant LOW 972A>G Val324Val
M0177098 JMECIOGM_00011 15839 8 Gut 0.24 protein_coding synonymous_variant LOW 990T>C Pro330Pro
M0177099 JMECIOGM_00011 15845 15 Gut 0.45 protein_coding synonymous_variant LOW 996T>C Phe332Phe
M0177100 JMECIOGM_00011 15875 15 Gut 0.45 protein_coding synonymous_variant LOW 1026C>T Asn342Asn
M0177101 JMECIOGM_00011 15893 15 Gut 0.45 protein_coding synonymous_variant LOW 1044T>C Asp348Asp
M0177102 JMECIOGM_00011 15899 15 Gut 0.45 protein_coding synonymous_variant LOW 1050C>T Ser350Ser
M0177103 JMECIOGM_00011 15902 15 Gut 0.45 protein_coding synonymous_variant LOW 1053C>T Pro351Pro
M0177104 JMECIOGM_00011 15920 15 Gut 0.45 protein_coding synonymous_variant LOW 1071T>C Asn357Asn
M0177105 JMECIOGM_00011 15926 15 Gut 0.45 protein_coding synonymous_variant LOW 1077A>G Glu359Glu
M0177106 JMECIOGM_00011 16079 14 Gut 0.42 protein_coding synonymous_variant LOW 1230T>C Tyr410Tyr
M0177107 JMECIOGM_00011 16211 14 Gut 0.42 protein_coding synonymous_variant LOW 1362T>C Ala454Ala
M0177108 JMECIOGM_00011 16223 7 Gut 0.21 protein_coding synonymous_variant LOW 1374A>T Val458Val
M0177109 JMECIOGM_00011 16242 14 Gut 0.42 protein_coding synonymous_variant LOW 1393C>T Leu465Leu
M0177110 JMECIOGM_00011 16271 14 Gut 0.42 protein_coding synonymous_variant LOW 1422C>T Tyr474Tyr
M0177111 JMECIOGM_00011 16292 14 Gut 0.42 protein_coding synonymous_variant LOW 1443G>A Leu481Leu
M0177112 JMECIOGM_00011 16310 7 Gut 0.21 protein_coding synonymous_variant LOW 1461C>T Asn487Asn
M0177113 JMECIOGM_00011 16364 14 Gut 0.42 protein_coding synonymous_variant LOW 1515C>T Ile505Ile
M0177114 JMECIOGM_00011 16367 14 Gut 0.42 protein_coding synonymous_variant LOW 1518T>C Asn506Asn
M0177115 JMECIOGM_00011 16397 14 Gut 0.42 protein_coding synonymous_variant LOW 1548T>G Gly516Gly
M0177116 JMECIOGM_00011 16430 14 Gut 0.42 protein_coding synonymous_variant LOW 1581T>C Asn527Asn
M0177117 JMECIOGM_00011 16439 14 Gut 0.42 protein_coding synonymous_variant LOW 1590C>T Tyr530Tyr
M0177118 JMECIOGM_00011 16440 14 Gut 0.42 protein_coding missense_variant MODERATE 1591G>C Val531Leu
M0177119 JMECIOGM_00011 16448 14 Gut 0.42 protein_coding synonymous_variant LOW 1599C>A Ala533Ala
M0177120 JMECIOGM_00011 16451 14 Gut 0.42 protein_coding synonymous_variant LOW 1602T>C Ala534Ala
M0177121 JMECIOGM_00011 16478 14 Gut 0.42 protein_coding synonymous_variant LOW 1629T>C Phe543Phe
M0177122 JMECIOGM_00011 16487 14 Gut 0.42 protein_coding synonymous_variant LOW 1638T>C Arg546Arg
M0177123 JMECIOGM_00011 16514 14 Gut 0.42 protein_coding synonymous_variant LOW 1665T>C Ala555Ala
M0177124 JMECIOGM_00011 16547 14 Gut 0.42 protein_coding synonymous_variant LOW 1698A>G Glu566Glu
M0177125 JMECIOGM_00011 16556 14 Gut 0.42 protein_coding synonymous_variant LOW 1707T>C Asn569Asn
M0177126 JMECIOGM_00011 16586 14 Gut 0.42 protein_coding synonymous_variant LOW 1737A>G Ala579Ala
M0177127 JMECIOGM_00011 16601 14 Gut 0.42 protein_coding synonymous_variant LOW 1752G>A Gln584Gln
M0177128 JMECIOGM_00011 16625 14 Gut 0.42 protein_coding synonymous_variant LOW 1776A>G Glu592Glu
M0177129 JMECIOGM_00011 16692 14 Gut 0.42 protein_coding synonymous_variant LOW 1843C>T Leu615Leu
M0177130 JMECIOGM_00011 16733 14 Gut 0.42 protein_coding synonymous_variant LOW 1884C>T Thr628Thr
M0177131 JMECIOGM_00011 16778 14 Gut 0.42 protein_coding synonymous_variant LOW 1929C>A Leu643Leu
M0177132 JMECIOGM_00011 16784 14 Gut 0.42 protein_coding synonymous_variant LOW 1935T>C Asp645Asp
M0177133 JMECIOGM_00011 16823 14 Gut 0.42 protein_coding synonymous_variant LOW 1974G>A Thr658Thr
M0177134 JMECIOGM_00011 16835 14 Gut 0.42 protein_coding synonymous_variant LOW 1986T>C Leu662Leu
M0177135 JMECIOGM_00011 16844 14 Gut 0.42 protein_coding synonymous_variant LOW 1995T>C Arg665Arg
M0177136 JMECIOGM_00011 16847 14 Gut 0.42 protein_coding synonymous_variant LOW 1998C>T Pro666Pro
M0177137 JMECIOGM_00011 16855 14 Gut 0.42 protein_coding missense_variant MODERATE 2006T>A Phe669Tyr
M0177138 JMECIOGM_00011 16871 14 Gut 0.42 protein_coding synonymous_variant LOW 2022G>T Arg674Arg
M0177139 JMECIOGM_00011 16880 7 Gut 0.21 protein_coding synonymous_variant LOW 2031C>T Asn677Asn
M0177140 JMECIOGM_00011 16889 14 Gut 0.42 protein_coding synonymous_variant LOW 2040T>C Asn680Asn
M0177141 JMECIOGM_00011 16904 14 Gut 0.42 protein_coding synonymous_variant LOW 2055G>A Lys685Lys
M0177142 JMECIOGM_00011 16940 13 Gut 0.39 protein_coding synonymous_variant LOW 2091C>T Ile697Ile
M0177143 JMECIOGM_00011 16950 13 Gut 0.39 protein_coding missense_variant MODERATE 2101T>C Ser701Pro
M0177144 JMECIOGM_00011 16952 13 Gut 0.39 protein_coding synonymous_variant LOW 2103T>C Ser701Ser
M0177145 JMECIOGM_00011 16958 10 Gut 0.30 protein_coding synonymous_variant LOW 2109G>A Leu703Leu
M0177146 JMECIOGM_00011 16979 13 Gut 0.39 protein_coding synonymous_variant LOW 2130A>G Val710Val
M0177147 JMECIOGM_00011 16982 13 Gut 0.39 protein_coding synonymous_variant LOW 2133C>A Gly711Gly
M0177148 JMECIOGM_00011 16985 13 Gut 0.39 protein_coding synonymous_variant LOW 2136C>T Ser712Ser
M0177149 JMECIOGM_00011 17000 13 Gut 0.39 protein_coding synonymous_variant LOW 2151T>C Arg717Arg
M0177150 JMECIOGM_00011 17003 13 Gut 0.39 protein_coding synonymous_variant LOW 2154T>C Ile718Ile
M0177151 JMECIOGM_00011 17010 13 Gut 0.39 protein_coding synonymous_variant LOW 2161T>C Leu721Leu
M0177152 JMECIOGM_00011 17012 13 Gut 0.39 protein_coding synonymous_variant LOW 2163A>G Leu721Leu
M0177153 JMECIOGM_00012 17232 13 Gut 0.39 protein_coding synonymous_variant LOW 102G>A Ala34Ala
M0177154 JMECIOGM_00012 17310 13 Gut 0.39 protein_coding synonymous_variant LOW 180G>A Gln60Gln
M0177155 JMECIOGM_00012 17334 13 Gut 0.39 protein_coding synonymous_variant LOW 204C>T Tyr68Tyr
M0177156 JMECIOGM_00012 17442 13 Gut 0.39 protein_coding synonymous_variant LOW 312C>T Ala104Ala
M0177157 JMECIOGM_00012 17488 13 Gut 0.39 protein_coding missense_variant MODERATE 358G>A Val120Ile
M0177158 JMECIOGM_00012 17548 13 Gut 0.39 protein_coding synonymous_variant LOW 418T>C Leu140Leu
M0177159 JMECIOGM_00012 17662 13 Gut 0.39 protein_coding missense_variant MODERATE 532A>G Asn178Asp
M0177160 JMECIOGM_00013 17782 9 Gut 0.27 protein_coding missense_variant MODERATE 38T>C Val13Ala
M0177161 JMECIOGM_00013 17783 13 Gut 0.39 protein_coding synonymous_variant LOW 39C>T Val13Val
M0177162 JMECIOGM_00013 18026 13 Gut 0.39 protein_coding synonymous_variant LOW 282T>C Ala94Ala
M0177163 JMECIOGM_00013 18107 13 Gut 0.39 protein_coding synonymous_variant LOW 363T>C Arg121Arg
M0177164 JMECIOGM_00008 12237 16 Gut 0.48 protein_coding synonymous_variant LOW 42T>C Val14Val
M0177165 JMECIOGM_00001 852 5 Gut 0.15 protein_coding synonymous_variant LOW 585G>A Gln195Gln
M0177166 JMECIOGM_00001 945 5 Gut 0.15 protein_coding synonymous_variant LOW 492A>G Val164Val
M0177167 JMECIOGM_00001 1386 6 Gut 0.18 protein_coding synonymous_variant LOW 51G>A Leu17Leu
M0177168 JMECIOGM_00002 2285 7 Gut 0.21 protein_coding synonymous_variant LOW 147C>T Arg49Arg
M0177169 JMECIOGM_00002 2426 7 Gut 0.21 protein_coding synonymous_variant LOW 6G>A Gly2Gly
M0177170 JMECIOGM_00003 2530 7 Gut 0.21 protein_coding synonymous_variant LOW 1305C>T Ala435Ala
M0177171 JMECIOGM_00003 2536 7 Gut 0.21 protein_coding synonymous_variant LOW 1299T>C Tyr433Tyr
M0177172 JMECIOGM_00003 2590 7 Gut 0.21 protein_coding synonymous_variant LOW 1245G>A Leu415Leu
M0177173 JMECIOGM_00003 2607 7 Gut 0.21 protein_coding missense_variant MODERATE 1228C>A Leu410Ile
M0177174 JMECIOGM_00003 2611 7 Gut 0.21 protein_coding synonymous_variant LOW 1224T>C Thr408Thr
M0177175 JMECIOGM_00003 2619 7 Gut 0.21 protein_coding missense_variant MODERATE 1216G>T Asp406Tyr
M0177176 JMECIOGM_00003 2643 7 Gut 0.21 protein_coding missense_variant MODERATE 1192A>G Ile398Val
M0177177 JMECIOGM_00003 2644 7 Gut 0.21 protein_coding synonymous_variant LOW 1191T>C Arg397Arg
M0177178 JMECIOGM_00003 2719 7 Gut 0.21 protein_coding synonymous_variant LOW 1116C>T Ile372Ile
M0177179 JMECIOGM_00003 3079 6 Gut 0.18 protein_coding synonymous_variant LOW 756C>T Ile252Ile
M0177180 JMECIOGM_00003 3343 6 Gut 0.18 protein_coding synonymous_variant LOW 492C>T Gly164Gly
M0177181 JMECIOGM_00004 4167 5 Gut 0.15 protein_coding synonymous_variant LOW 207A>G Gly69Gly
M0177182 JMECIOGM_00004 4194 5 Gut 0.15 protein_coding synonymous_variant LOW 180G>A Glu60Glu
M0177183 JMECIOGM_00007 12415 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3428C>T None
M0177184 JMECIOGM_00007 12418 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3431T>C None
M0177185 JMECIOGM_00007 12651 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3664C>T None
M0177186 JMECIOGM_00010 13086 15 Gut 0.45 protein_coding missense_variant MODERATE 355G>A Ala119Thr
M0177187 JMECIOGM_00010 13091 15 Gut 0.45 protein_coding synonymous_variant LOW 360G>A Leu120Leu
M0177188 JMECIOGM_00010 13331 4 Gut 0.12 protein_coding synonymous_variant LOW 600G>A Lys200Lys
M0177189 JMECIOGM_00010 13399 4 Gut 0.12 protein_coding missense_variant MODERATE 668G>A Ser223Asn
M0177190 JMECIOGM_00010 13512 4 Gut 0.12 protein_coding missense_variant MODERATE 781G>A Glu261Lys
M0177191 JMECIOGM_00010 13757 4 Gut 0.12 protein_coding synonymous_variant LOW 1026T>A Thr342Thr
M0177192 JMECIOGM_00008 14040 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1762G>A None
M0177193 JMECIOGM_00008 14047 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -1769A>T None
M0177194 JMECIOGM_00005 5180 7 Gut 0.21 protein_coding synonymous_variant LOW 339T>C Cys113Cys
M0177195 JMECIOGM_00005 5270 9 Gut 0.27 protein_coding synonymous_variant LOW 429C>T His143His
M0177196 JMECIOGM_00005 5282 10 Gut 0.30 protein_coding synonymous_variant LOW 441T>C Tyr147Tyr
M0177197 JMECIOGM_00005 5307 10 Gut 0.30 protein_coding missense_variant MODERATE 466C>T Arg156Cys
M0177198 JMECIOGM_00005 5309 10 Gut 0.30 protein_coding synonymous_variant LOW 468C>T Arg156Arg
M0177199 JMECIOGM_00005 5315 10 Gut 0.30 protein_coding synonymous_variant LOW 474C>T Asp158Asp
M0177200 JMECIOGM_00005 5328 10 Gut 0.30 protein_coding synonymous_variant LOW 487C>T Leu163Leu
M0177201 JMECIOGM_00005 5414 8 Gut 0.24 protein_coding synonymous_variant LOW 573C>T Asn191Asn
M0177202 JMECIOGM_00005 5420 8 Gut 0.24 protein_coding synonymous_variant LOW 579T>C Tyr193Tyr
M0177203 JMECIOGM_00005 5450 8 Gut 0.24 protein_coding synonymous_variant LOW 609A>C Ala203Ala
M0177204 JMECIOGM_00005 5516 10 Gut 0.30 protein_coding synonymous_variant LOW 675C>T Gly225Gly
M0177205 JMECIOGM_00005 5576 9 Gut 0.27 protein_coding synonymous_variant LOW 735C>T Pro245Pro
M0177206 JMECIOGM_00005 5653 7 Gut 0.21 protein_coding missense_variant MODERATE 812G>A Arg271Gln
M0177207 JMECIOGM_00005 5702 7 Gut 0.21 protein_coding synonymous_variant LOW 861G>A Leu287Leu
M0177208 JMECIOGM_00005 5729 7 Gut 0.21 protein_coding synonymous_variant LOW 888T>C Phe296Phe
M0177209 JMECIOGM_00005 5768 7 Gut 0.21 protein_coding synonymous_variant LOW 927T>A Val309Val
M0177210 JMECIOGM_00005 5783 7 Gut 0.21 protein_coding synonymous_variant LOW 942A>G Leu314Leu
M0177211 JMECIOGM_00010 13901 4 Gut 0.12 protein_coding synonymous_variant LOW 1170G>A Leu390Leu
M0177212 JMECIOGM_00007 13930 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4943T>C None
M0177213 JMECIOGM_00010 13016 3 Gut 0.09 protein_coding synonymous_variant LOW 285G>A Lys95Lys
M0177214 JMECIOGM_00010 13730 3 Gut 0.09 protein_coding synonymous_variant LOW 999T>C Phe333Phe
M0177215 JMECIOGM_00011 14852 4 Gut 0.12 protein_coding start_lost HIGH 3G>T Met1?
M0177216 JMECIOGM_00011 15104 4 Gut 0.12 protein_coding synonymous_variant LOW 255T>C Ile85Ile
M0177217 JMECIOGM_00011 15827 11 Gut 0.33 protein_coding synonymous_variant LOW 978T>C Arg326Arg
M0177218 JMECIOGM_00012 17283 4 Gut 0.12 protein_coding synonymous_variant LOW 153T>C Ile51Ile
M0177219 JMECIOGM_00013 18128 11 Gut 0.33 protein_coding synonymous_variant LOW 384C>T Asn128Asn
M0177220 JMECIOGM_00013 18188 11 Gut 0.33 protein_coding synonymous_variant LOW 444C>T Ile148Ile
M0177221 JMECIOGM_00013 18191 11 Gut 0.33 protein_coding synonymous_variant LOW 447T>C Ala149Ala
M0177222 JMECIOGM_00013 18209 11 Gut 0.33 protein_coding synonymous_variant LOW 465C>T Tyr155Tyr
M0177223 JMECIOGM_00013 18236 11 Gut 0.33 protein_coding synonymous_variant LOW 492C>T Tyr164Tyr
M0177224 JMECIOGM_00013 18307 4 Gut 0.12 protein_coding missense_variant MODERATE 563C>T Ser188Phe
M0177225 JMECIOGM_00013 18338 11 Gut 0.33 protein_coding synonymous_variant LOW 594G>A Thr198Thr
M0177226 JMECIOGM_00013 18422 4 Gut 0.12 protein_coding synonymous_variant LOW 678G>A Lys226Lys
M0177227 JMECIOGM_00013 18423 4 Gut 0.12 protein_coding missense_variant MODERATE 679A>G Asn227Asp
M0177228 JMECIOGM_00014 18543 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -125G>A None
M0177229 JMECIOGM_00014 18594 7 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -74A>G None
M0177230 JMECIOGM_00014 18802 4 Gut 0.12 protein_coding synonymous_variant LOW 135T>C Arg45Arg
M0177231 JMECIOGM_00014 18808 4 Gut 0.12 protein_coding synonymous_variant LOW 141A>T Thr47Thr
M0177232 JMECIOGM_00014 18822 12 Gut 0.36 protein_coding missense_variant MODERATE 155A>C Asp52Ala
M0177233 JMECIOGM_00014 18823 12 Gut 0.36 protein_coding synonymous_variant LOW 156C>T Asp52Asp
M0177234 JMECIOGM_00014 18886 12 Gut 0.36 protein_coding synonymous_variant LOW 219C>T Ala73Ala
M0177235 JMECIOGM_00014 18945 4 Gut 0.12 protein_coding missense_variant MODERATE 278A>G Asn93Ser
M0177236 JMECIOGM_00015 19022 8 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -1095C>T None
M0177237 JMECIOGM_00015 19023 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -1094T>A None
M0177238 JMECIOGM_00015 19059 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -1058C>T None
M0177239 JMECIOGM_00015 19289 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -828G>A None
M0177240 JMECIOGM_00015 19335 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -782C>T None
M0177241 JMECIOGM_00015 19412 7 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -705C>T None
M0177242 JMECIOGM_00015 19512 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -605C>T None
M0177243 JMECIOGM_00015 19541 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -576A>T None
M0177244 JMECIOGM_00015 19592 8 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -525G>A None
M0177245 JMECIOGM_00015 19623 8 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -494T>C None
M0177246 JMECIOGM_00005 5822 4 Gut 0.12 protein_coding synonymous_variant LOW 981C>T Gly327Gly
M0177247 JMECIOGM_00005 5828 4 Gut 0.12 protein_coding synonymous_variant LOW 987G>A Lys329Lys
M0177248 JMECIOGM_00005 5954 4 Gut 0.12 protein_coding synonymous_variant LOW 1113C>T Pro371Pro
M0177249 JMECIOGM_00005 5963 4 Gut 0.12 protein_coding synonymous_variant LOW 1122A>G Val374Val
M0177250 JMECIOGM_00005 5966 4 Gut 0.12 protein_coding synonymous_variant LOW 1125T>A Val375Val
M0177251 JMECIOGM_00001 4427 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -2991G>A None
M0177252 JMECIOGM_00001 4766 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3330A>G None
M0177253 JMECIOGM_00001 4803 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3367T>C None
M0177254 JMECIOGM_00005 5091 9 Gut 0.27 protein_coding missense_variant MODERATE 250C>T His84Tyr
M0177255 JMECIOGM_00011 15143 7 Gut 0.21 protein_coding synonymous_variant LOW 294C>T Asp98Asp
M0177256 JMECIOGM_00011 15521 7 Gut 0.21 protein_coding synonymous_variant LOW 672C>T Pro224Pro
M0177257 JMECIOGM_00011 15898 7 Gut 0.21 protein_coding missense_variant MODERATE 1049G>A Ser350Asn
M0177258 JMECIOGM_00011 16472 7 Gut 0.21 protein_coding synonymous_variant LOW 1623C>T Ser541Ser
M0177259 JMECIOGM_00011 16481 7 Gut 0.21 protein_coding synonymous_variant LOW 1632G>A Leu544Leu
M0177260 JMECIOGM_00011 16563 4 Gut 0.12 protein_coding synonymous_variant LOW 1714T>C Leu572Leu
M0177261 JMECIOGM_00011 16728 7 Gut 0.21 protein_coding synonymous_variant LOW 1879T>C Leu627Leu
M0177262 JMECIOGM_00011 16766 7 Gut 0.21 protein_coding synonymous_variant LOW 1917A>G Val639Val
M0177263 JMECIOGM_00011 17108 7 Gut 0.21 protein_coding synonymous_variant LOW 2259C>T Gly753Gly
M0177264 JMECIOGM_00011 17114 7 Gut 0.21 protein_coding synonymous_variant LOW 2265C>T Asp755Asp
M0177265 JMECIOGM_00012 17349 7 Gut 0.21 protein_coding synonymous_variant LOW 219C>T Gly73Gly
M0177266 JMECIOGM_00012 17555 7 Gut 0.21 protein_coding missense_variant MODERATE 425A>G Gln142Arg
M0177267 JMECIOGM_00012 17643 7 Gut 0.21 protein_coding synonymous_variant LOW 513G>A Val171Val
M0177268 JMECIOGM_00013 17786 7 Gut 0.21 protein_coding synonymous_variant LOW 42G>A Gly14Gly
M0177269 JMECIOGM_00013 18498 7 Gut 0.21 protein_coding missense_variant MODERATE 754G>A Glu252Lys
M0177270 JMECIOGM_00013 18501 7 Gut 0.21 protein_coding missense_variant MODERATE 757C>T His253Tyr
M0177271 JMECIOGM_00015 19351 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -766T>C None
M0177272 JMECIOGM_00015 19371 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -746G>A None
M0177273 JMECIOGM_00015 19378 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -739G>A None
M0177274 JMECIOGM_00015 19439 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -678G>A None
M0177275 JMECIOGM_00015 19443 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -674T>C None
M0177276 JMECIOGM_00015 19558 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -559G>A None
M0177277 JMECIOGM_00008 14106 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -1828G>A None
M0177278 JMECIOGM_00001 4778 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3342T>C None
M0177279 JMECIOGM_00006 6601 4 Gut 0.12 protein_coding missense_variant MODERATE 121G>A Gly41Arg
M0177280 JMECIOGM_00011 17036 3 Gut 0.09 protein_coding synonymous_variant LOW 2187T>C Gly729Gly
M0177281 JMECIOGM_00013 18222 3 Gut 0.09 protein_coding synonymous_variant LOW 478C>T Leu160Leu
M0177282 JMECIOGM_00014 18615 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -53G>A None
M0177283 JMECIOGM_00014 18633 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -35T>A None
M0177284 JMECIOGM_00014 18634 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -34A>T None
M0177285 JMECIOGM_00014 18636 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -32C>T None
M0177286 JMECIOGM_00014 18640 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -28G>A None
M0177287 JMECIOGM_00014 18661 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -7A>G None
M0177288 JMECIOGM_00014 18700 3 Gut 0.09 protein_coding synonymous_variant LOW 33C>T Gly11Gly
M0177289 JMECIOGM_00014 18706 3 Gut 0.09 protein_coding synonymous_variant LOW 39T>G Gly13Gly
M0177290 JMECIOGM_00015 19029 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -1088A>T None
M0177291 JMECIOGM_00015 19063 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -1054C>T None
M0177292 JMECIOGM_00015 19235 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -882T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term