Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C772
  Reference Plasmid   NZ_CP059857.1
  Reference Plasmid Size   76094
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0177302 LPAAHBMH_00057 46774 4 Gut 0.04 protein_coding synonymous_variant LOW 333C>T Gly111Gly
M0177303 LPAAHBMH_00057 46783 4 Gut 0.04 protein_coding synonymous_variant LOW 324T>C Ser108Ser
M0177304 LPAAHBMH_00057 46786 4 Gut 0.04 protein_coding synonymous_variant LOW 321C>T Leu107Leu
M0177305 LPAAHBMH_00057 46789 4 Gut 0.04 protein_coding synonymous_variant LOW 318G>A Lys106Lys
M0177306 LPAAHBMH_00057 46798 6 Gut 0.05 protein_coding synonymous_variant LOW 309T>C Pro103Pro
M0177307 LPAAHBMH_00057 46801 4 Gut 0.04 protein_coding synonymous_variant LOW 306G>A Leu102Leu
M0177308 LPAAHBMH_00057 46810 4 Gut 0.04 protein_coding synonymous_variant LOW 297G>A Thr99Thr
M0177309 LPAAHBMH_00057 46825 6 Gut 0.05 protein_coding synonymous_variant LOW 282T>C Asn94Asn
M0177310 LPAAHBMH_00057 46830 4 Gut 0.04 protein_coding missense_variant MODERATE 277G>A Asp93Asn
M0177311 LPAAHBMH_00057 46840 4 Gut 0.04 protein_coding synonymous_variant LOW 267A>G Gln89Gln
M0177312 LPAAHBMH_00057 46912 5 Gut 0.04 protein_coding synonymous_variant LOW 195A>G Lys65Lys
M0177313 LPAAHBMH_00057 46930 5 Gut 0.04 protein_coding synonymous_variant LOW 177C>T Phe59Phe
M0177314 LPAAHBMH_00057 46948 5 Gut 0.04 protein_coding synonymous_variant LOW 159C>T Thr53Thr
M0177315 LPAAHBMH_00057 46959 5 Gut 0.04 protein_coding missense_variant MODERATE 148C>T Pro50Ser
M0177316 LPAAHBMH_00057 46960 6 Gut 0.05 protein_coding synonymous_variant LOW 147C>T His49His
M0177317 LPAAHBMH_00057 46963 5 Gut 0.04 protein_coding synonymous_variant LOW 144A>T Thr48Thr
M0177318 LPAAHBMH_00057 47014 5 Gut 0.04 protein_coding synonymous_variant LOW 93C>T Phe31Phe
M0177319 LPAAHBMH_00057 47102 5 Gut 0.04 protein_coding missense_variant MODERATE 5A>G Lys2Arg
M0177320 LPAAHBMH_00058 47133 5 Gut 0.04 protein_coding missense_variant MODERATE 309A>C Gln103His
M0177321 LPAAHBMH_00058 47220 5 Gut 0.04 protein_coding synonymous_variant LOW 222T>C Ser74Ser
M0177322 LPAAHBMH_00058 47223 5 Gut 0.04 protein_coding missense_variant MODERATE 219A>G Ile73Met
M0177323 LPAAHBMH_00058 47232 5 Gut 0.04 protein_coding synonymous_variant LOW 210T>C Ile70Ile
M0177324 LPAAHBMH_00058 47271 5 Gut 0.04 protein_coding synonymous_variant LOW 171T>C Cys57Cys
M0177325 LPAAHBMH_00058 47286 5 Gut 0.04 protein_coding synonymous_variant LOW 156G>A Lys52Lys
M0177326 LPAAHBMH_00058 47292 5 Gut 0.04 protein_coding synonymous_variant LOW 150T>G Thr50Thr
M0177327 LPAAHBMH_00058 47297 5 Gut 0.04 protein_coding missense_variant MODERATE 145G>A Val49Ile
M0177328 LPAAHBMH_00058 47301 5 Gut 0.04 protein_coding synonymous_variant LOW 141T>C Ser47Ser
M0177329 LPAAHBMH_00058 47310 5 Gut 0.04 protein_coding synonymous_variant LOW 132A>G Ala44Ala
M0177330 LPAAHBMH_00058 47316 5 Gut 0.04 protein_coding synonymous_variant LOW 126T>C Asp42Asp
M0177331 LPAAHBMH_00058 47319 5 Gut 0.04 protein_coding synonymous_variant LOW 123G>A Ala41Ala
M0177332 LPAAHBMH_00058 47334 5 Gut 0.04 protein_coding synonymous_variant LOW 108C>T Ser36Ser
M0177333 LPAAHBMH_00058 47373 5 Gut 0.04 protein_coding synonymous_variant LOW 69C>T Cys23Cys
M0177334 LPAAHBMH_00058 47385 5 Gut 0.04 protein_coding synonymous_variant LOW 57A>T Val19Val
M0177335 LPAAHBMH_00058 47433 5 Gut 0.04 protein_coding synonymous_variant LOW 9A>G Arg3Arg
M0177336 LPAAHBMH_00052 47491 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4482A>C None
M0177337 LPAAHBMH_00052 47538 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4529T>C None
M0177338 LPAAHBMH_00052 47548 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4539C>T None
M0177339 LPAAHBMH_00052 47558 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4549T>C None
M0177340 LPAAHBMH_00052 47595 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4586A>G None
M0177341 LPAAHBMH_00052 47604 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4595C>T None
M0177342 LPAAHBMH_00052 47607 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4598C>A None
M0177343 LPAAHBMH_00059 47613 5 Gut 0.04 protein_coding stop_lost&splice_region_variant HIGH 334T>G Ter112Gluext*?
M0177344 LPAAHBMH_00059 47641 5 Gut 0.04 protein_coding synonymous_variant LOW 306T>C Ala102Ala
M0177345 LPAAHBMH_00059 47686 5 Gut 0.04 protein_coding synonymous_variant LOW 261G>A Thr87Thr
M0177346 LPAAHBMH_00059 47840 5 Gut 0.04 protein_coding missense_variant MODERATE 107G>A Ser36Asn
M0177347 LPAAHBMH_00059 47845 5 Gut 0.04 protein_coding synonymous_variant LOW 102G>A Val34Val
M0177348 LPAAHBMH_00059 47904 5 Gut 0.04 protein_coding missense_variant MODERATE 43T>C Cys15Arg
M0177349 LPAAHBMH_00059 47911 5 Gut 0.04 protein_coding synonymous_variant LOW 36C>T Gly12Gly
M0177350 LPAAHBMH_00057 46132 3 Gut 0.03 protein_coding synonymous_variant LOW 975A>G Val325Val
M0177351 LPAAHBMH_00057 46133 3 Gut 0.03 protein_coding missense_variant MODERATE 974T>G Val325Gly
M0177352 LPAAHBMH_00057 46134 3 Gut 0.03 protein_coding missense_variant MODERATE 973G>A Val325Ile
M0177353 LPAAHBMH_00057 46140 3 Gut 0.03 protein_coding missense_variant MODERATE 967G>A Ala323Thr
M0177354 LPAAHBMH_00057 46173 3 Gut 0.03 protein_coding missense_variant MODERATE 934C>T His312Tyr
M0177355 LPAAHBMH_00057 46174 3 Gut 0.03 protein_coding synonymous_variant LOW 933T>C Asp311Asp
M0177356 LPAAHBMH_00057 46180 3 Gut 0.03 protein_coding synonymous_variant LOW 927C>T Ser309Ser
M0177357 LPAAHBMH_00005 9308 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4634T>G None
M0177358 LPAAHBMH_00005 9309 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4635C>A None
M0177359 LPAAHBMH_00013 11014 7 Gut 0.06 protein_coding missense_variant MODERATE 1024A>G Arg342Gly
M0177360 LPAAHBMH_00013 11091 3 Gut 0.03 protein_coding synonymous_variant LOW 1101G>A Gln367Gln
M0177361 LPAAHBMH_00013 11160 4 Gut 0.04 protein_coding synonymous_variant LOW 1170T>C Gly390Gly
M0177362 LPAAHBMH_00013 11167 5 Gut 0.04 protein_coding missense_variant MODERATE 1177A>G Lys393Glu
M0177363 LPAAHBMH_00013 11188 5 Gut 0.04 protein_coding missense_variant MODERATE 1198G>A Glu400Lys
M0177364 LPAAHBMH_00013 11191 5 Gut 0.04 protein_coding missense_variant MODERATE 1201A>G Ile401Val
M0177365 LPAAHBMH_00013 11209 4 Gut 0.04 protein_coding missense_variant MODERATE 1219C>T His407Tyr
M0177366 LPAAHBMH_00009 11640 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4762T>G None
M0177367 LPAAHBMH_00017 16320 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1881A>C None
M0177368 LPAAHBMH_00052 45327 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -2318G>A None
M0177369 LPAAHBMH_00052 45352 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -2343A>G None
M0177370 LPAAHBMH_00069 54699 7 Gut 0.06 protein_coding missense_variant MODERATE 269G>A Gly90Glu
M0177371 LPAAHBMH_00065 56104 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -3948C>T None
M0177372 LPAAHBMH_00065 56115 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3959C>T None
M0177373 LPAAHBMH_00065 56127 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3971G>T None
M0177374 LPAAHBMH_00065 56136 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3980T>C None
M0177375 LPAAHBMH_00065 56151 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3995A>T None
M0177376 LPAAHBMH_00065 56197 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4041G>A None
M0177377 LPAAHBMH_00065 56233 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4077C>T None
M0177378 LPAAHBMH_00065 56283 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4127G>T None
M0177379 LPAAHBMH_00065 56287 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4131C>T None
M0177380 LPAAHBMH_00086 64743 25 Gut 0.22 protein_coding synonymous_variant LOW 1041G>A Lys347Lys
M0177381 LPAAHBMH_00087 66526 3 Gut 0.03 protein_coding missense_variant MODERATE 286T>C Ser96Pro
M0177382 LPAAHBMH_00087 66527 3 Gut 0.03 protein_coding missense_variant MODERATE 287C>T Ser96Phe
M0177383 LPAAHBMH_00087 66557 3 Gut 0.03 protein_coding missense_variant MODERATE 317G>A Gly106Asp
M0177384 LPAAHBMH_00087 66558 3 Gut 0.03 protein_coding synonymous_variant LOW 318T>C Gly106Gly
M0177385 LPAAHBMH_00083 66675 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4544T>G None
M0177386 LPAAHBMH_00083 66679 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4548G>C None
M0177387 LPAAHBMH_00083 66711 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4580C>T None
M0177388 LPAAHBMH_00083 66729 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4598T>C None
M0177389 LPAAHBMH_00083 66736 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4605T>C None
M0177390 LPAAHBMH_00083 66738 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4607C>T None
M0177391 LPAAHBMH_00083 66741 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4610G>A None
M0177392 LPAAHBMH_00083 66744 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4613A>T None
M0177393 LPAAHBMH_00083 66768 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4637G>A None
M0177394 LPAAHBMH_00083 66811 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4680A>T None
M0177395 LPAAHBMH_00083 66816 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4685C>T None
M0177396 LPAAHBMH_00083 66832 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4701T>C None
M0177397 LPAAHBMH_00083 66834 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4703A>T None
M0177398 LPAAHBMH_00083 66864 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4733T>G None
M0177399 LPAAHBMH_00083 66873 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4742G>A None
M0177400 LPAAHBMH_00083 66912 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4781A>G None
M0177401 LPAAHBMH_00083 66927 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4796G>A None
M0177402 LPAAHBMH_00088 66990 5 Gut 0.04 protein_coding synonymous_variant LOW 6T>C Asp2Asp
M0177403 LPAAHBMH_00088 66998 5 Gut 0.04 protein_coding missense_variant MODERATE 14A>T Gln5Leu
M0177404 LPAAHBMH_00088 67060 4 Gut 0.04 protein_coding missense_variant MODERATE 76G>A Val26Ile
M0177405 LPAAHBMH_00088 67061 4 Gut 0.04 protein_coding missense_variant MODERATE 77T>C Val26Ala
M0177406 LPAAHBMH_00088 67113 4 Gut 0.04 protein_coding synonymous_variant LOW 129T>C Phe43Phe
M0177407 LPAAHBMH_00088 67167 4 Gut 0.04 protein_coding synonymous_variant LOW 183C>A Ala61Ala
M0177408 LPAAHBMH_00088 67194 4 Gut 0.04 protein_coding synonymous_variant LOW 210A>G Thr70Thr
M0177409 LPAAHBMH_00088 67209 4 Gut 0.04 protein_coding synonymous_variant LOW 225C>T Asn75Asn
M0177410 LPAAHBMH_00088 67230 4 Gut 0.04 protein_coding missense_variant MODERATE 246A>C Gln82His
M0177411 LPAAHBMH_00088 67297 5 Gut 0.04 protein_coding missense_variant MODERATE 313A>G Ile105Val
M0177412 LPAAHBMH_00088 67323 5 Gut 0.04 protein_coding synonymous_variant LOW 339G>A Arg113Arg
M0177413 LPAAHBMH_00088 67362 5 Gut 0.04 protein_coding synonymous_variant LOW 378C>T Asn126Asn
M0177414 LPAAHBMH_00053 48098 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4677T>C None
M0177415 LPAAHBMH_00053 48100 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4679C>T None
M0177416 LPAAHBMH_00053 48127 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4706C>T None
M0177417 LPAAHBMH_00032 25435 10 Gut 0.09 protein_coding synonymous_variant LOW 106T>C Leu36Leu
M0177418 LPAAHBMH_00041 32745 11 Gut 0.10 protein_coding synonymous_variant LOW 1005C>T Ile335Ile
M0177419 LPAAHBMH_00027 20696 3 Gut 0.03 protein_coding synonymous_variant LOW 120G>T Gly40Gly
M0177420 LPAAHBMH_00036 26837 3 Gut 0.03 protein_coding missense_variant MODERATE 271C>A Leu91Met
M0177421 LPAAHBMH_00046 36166 6 Gut 0.05 protein_coding synonymous_variant LOW 159C>T Ser53Ser
M0177422 LPAAHBMH_00065 56198 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4042A>T None
M0177423 LPAAHBMH_00065 56207 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4051C>T None
M0177424 LPAAHBMH_00065 56210 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4054A>G None
M0177425 LPAAHBMH_00078 59092 5 Gut 0.04 protein_coding missense_variant MODERATE 17G>A Gly6Glu
M0177426 LPAAHBMH_00073 56960 3 Gut 0.03 protein_coding missense_variant MODERATE 70A>G Ser24Gly
M0177427 LPAAHBMH_00073 57043 3 Gut 0.03 protein_coding synonymous_variant LOW 153G>A Arg51Arg
M0177428 LPAAHBMH_00073 57086 3 Gut 0.03 protein_coding missense_variant MODERATE 196C>T Arg66Cys
M0177429 LPAAHBMH_00073 57134 3 Gut 0.03 protein_coding missense_variant MODERATE 244A>G Lys82Glu
M0177430 LPAAHBMH_00066 57226 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4502T>C None
M0177431 LPAAHBMH_00074 57264 3 Gut 0.03 protein_coding synonymous_variant LOW 33A>G Ala11Ala
M0177432 LPAAHBMH_00074 57351 3 Gut 0.03 protein_coding synonymous_variant LOW 120C>T Tyr40Tyr
M0177433 LPAAHBMH_00074 57416 3 Gut 0.03 protein_coding missense_variant MODERATE 185G>A Gly62Asp
M0177434 LPAAHBMH_00074 57429 3 Gut 0.03 protein_coding synonymous_variant LOW 198C>T Asn66Asn
M0177435 LPAAHBMH_00074 57453 3 Gut 0.03 protein_coding synonymous_variant LOW 222T>C Leu74Leu
M0177436 LPAAHBMH_00074 57553 3 Gut 0.03 protein_coding missense_variant MODERATE 322A>G Ser108Gly
M0177437 LPAAHBMH_00075 57713 3 Gut 0.03 protein_coding synonymous_variant LOW 231G>A Pro77Pro
M0177438 LPAAHBMH_00075 57845 3 Gut 0.03 protein_coding synonymous_variant LOW 99A>G Glu33Glu
M0177439 LPAAHBMH_00075 57851 3 Gut 0.03 protein_coding synonymous_variant LOW 93T>C Ile31Ile
M0177440 LPAAHBMH_00076 58061 3 Gut 0.03 protein_coding synonymous_variant LOW 180T>C Ala60Ala
M0177441 LPAAHBMH_00076 58130 3 Gut 0.03 protein_coding synonymous_variant LOW 111T>C Gly37Gly
M0177442 LPAAHBMH_00076 58168 3 Gut 0.03 protein_coding missense_variant MODERATE 73T>G Leu25Val
M0177443 LPAAHBMH_00079 59294 3 Gut 0.03 protein_coding synonymous_variant LOW 57G>A Glu19Glu
M0177444 LPAAHBMH_00085 63201 3 Gut 0.03 protein_coding missense_variant MODERATE 493A>G Ser165Gly
M0177445 LPAAHBMH_00085 63217 3 Gut 0.03 protein_coding synonymous_variant LOW 477A>G Gly159Gly
M0177446 LPAAHBMH_00085 63223 3 Gut 0.03 protein_coding synonymous_variant LOW 471A>G Pro157Pro
M0177447 LPAAHBMH_00085 63226 3 Gut 0.03 protein_coding synonymous_variant LOW 468C>T His156His
M0177448 LPAAHBMH_00085 63235 3 Gut 0.03 protein_coding synonymous_variant LOW 459A>G Val153Val
M0177449 LPAAHBMH_00085 63316 3 Gut 0.03 protein_coding synonymous_variant LOW 378C>T Gly126Gly
M0177450 LPAAHBMH_00085 63390 3 Gut 0.03 protein_coding missense_variant MODERATE 304G>A Ala102Thr
M0177451 LPAAHBMH_00085 63398 3 Gut 0.03 protein_coding missense_variant MODERATE 296G>C Cys99Ser
M0177452 LPAAHBMH_00085 63526 4 Gut 0.04 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0177453 LPAAHBMH_00085 63556 4 Gut 0.04 protein_coding synonymous_variant LOW 138A>G Gly46Gly
M0177454 LPAAHBMH_00085 63562 4 Gut 0.04 protein_coding missense_variant MODERATE 132A>G Ile44Met
M0177455 LPAAHBMH_00078 63991 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4883A>G None
M0177456 LPAAHBMH_00078 64026 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4918A>G None
M0177457 LPAAHBMH_00078 64050 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4942A>G None
M0177458 LPAAHBMH_00013 10920 3 Gut 0.03 protein_coding missense_variant MODERATE 930G>T Glu310Asp
M0177459 LPAAHBMH_00076 63018 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4778T>C None
M0177460 LPAAHBMH_00065 56386 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4230C>T None
M0177461 LPAAHBMH_00065 56428 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4272T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term