Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C787
  Reference Plasmid   NZ_CP062957.1
  Reference Plasmid Size   67237
  Reference Plasmid GC Content   0.53
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0101137 DMOPCJKB_00060 65036 3 Skin 0.18 protein_coding synonymous_variant LOW 831T>C Ser277Ser
M0101138 DMOPCJKB_00060 65109 3 Skin 0.18 protein_coding missense_variant MODERATE 758A>C Asp253Ala
M0101139 DMOPCJKB_00060 65432 3 Skin 0.18 protein_coding synonymous_variant LOW 435T>C Thr145Thr
M0101140 DMOPCJKB_00060 65435 3 Skin 0.18 protein_coding synonymous_variant LOW 432C>A Arg144Arg
M0101141 DMOPCJKB_00060 65480 3 Skin 0.18 protein_coding synonymous_variant LOW 387C>T Ala129Ala
M0101142 DMOPCJKB_00060 65483 3 Skin 0.18 protein_coding missense_variant MODERATE 384C>G Asn128Lys
M0101143 DMOPCJKB_00060 65540 3 Skin 0.18 protein_coding synonymous_variant LOW 327T>A Thr109Thr
M0101144 DMOPCJKB_00060 65561 3 Skin 0.18 protein_coding synonymous_variant LOW 306T>C Gly102Gly
M0101145 DMOPCJKB_00060 65597 3 Skin 0.18 protein_coding synonymous_variant LOW 270A>T Ala90Ala
M0101146 DMOPCJKB_00060 65671 3 Skin 0.18 protein_coding missense_variant MODERATE 196G>A Gly66Ser
M0101147 DMOPCJKB_00060 65672 3 Skin 0.18 protein_coding synonymous_variant LOW 195T>C Phe65Phe
M0101148 DMOPCJKB_00060 65678 3 Skin 0.18 protein_coding synonymous_variant LOW 189A>G Glu63Glu
M0101149 DMOPCJKB_00060 65836 3 Skin 0.18 protein_coding missense_variant MODERATE 31C>T Arg11Cys
M0101150 DMOPCJKB_00061 65987 3 Skin 0.18 protein_coding missense_variant MODERATE 194A>C Glu65Ala
M0101151 DMOPCJKB_00061 65994 3 Skin 0.18 protein_coding missense_variant MODERATE 187G>C Val63Leu
M0101152 DMOPCJKB_00061 66008 3 Skin 0.18 protein_coding missense_variant MODERATE 173G>A Ser58Asn
M0101153 DMOPCJKB_00061 66084 5 Skin 0.29 protein_coding missense_variant MODERATE 97A>C Lys33Gln
M0101154 DMOPCJKB_00061 66172 3 Skin 0.18 protein_coding synonymous_variant LOW 9A>G Arg3Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DMOPCJKB_00045 QOW64897.1|GH23 100 7.11e-274 1 365 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term