Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C799
  Reference Plasmid   NZ_CP065396.1
  Reference Plasmid Size   198121
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0183781 ECAKLHPH_00024 34143 3 Gut 0.15 protein_coding missense_variant MODERATE 398T>C Val133Ala
M0183782 ECAKLHPH_00119 118255 3 Gut 0.15 protein_coding synonymous_variant LOW 393T>A Ala131Ala
M0183783 ECAKLHPH_00133 128657 3 Gut 0.15 protein_coding missense_variant MODERATE 743G>A Arg248His
M0183784 ECAKLHPH_00133 128743 3 Gut 0.15 protein_coding synonymous_variant LOW 657C>T Thr219Thr
M0183785 ECAKLHPH_00130 129424 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3051T>C None
M0183786 ECAKLHPH_00130 129425 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3052A>G None
M0183787 ECAKLHPH_00130 129504 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3131C>A None
M0183788 ECAKLHPH_00130 129835 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3462G>A None
M0183789 ECAKLHPH_00130 129847 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3474A>G None
M0183790 ECAKLHPH_00130 129889 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3516G>A None
M0183791 ECAKLHPH_00134 130047 3 Gut 0.15 protein_coding missense_variant MODERATE 92T>G Leu31Arg
M0183792 ECAKLHPH_00134 130218 3 Gut 0.15 protein_coding missense_variant MODERATE 263C>T Ala88Val
M0183793 ECAKLHPH_00130 130827 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4454T>C None
M0183794 ECAKLHPH_00130 130891 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4518T>C None
M0183795 ECAKLHPH_00130 130912 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4539A>C None
M0183796 ECAKLHPH_00130 130921 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4548G>A None
M0183797 ECAKLHPH_00131 131683 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4030C>T None
M0183798 ECAKLHPH_00131 131741 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4088G>A None
M0183799 ECAKLHPH_00131 131915 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4262T>G None
M0183800 ECAKLHPH_00131 131969 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4316T>C None
M0183801 ECAKLHPH_00131 132174 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4521G>A None
M0183802 ECAKLHPH_00131 132224 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4571T>C None
M0183803 ECAKLHPH_00131 132227 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4574G>A None
M0183804 ECAKLHPH_00131 132298 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4645T>G None
M0183805 ECAKLHPH_00131 132302 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4649T>C None
M0183806 ECAKLHPH_00131 132315 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4662T>C None
M0183807 ECAKLHPH_00131 132328 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4675A>T None
M0183808 ECAKLHPH_00131 132520 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4867G>A None
M0183809 ECAKLHPH_00132 132727 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4634T>C None
M0183810 ECAKLHPH_00132 132824 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4731G>A None
M0183811 ECAKLHPH_00132 133004 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4911G>C None
M0183812 ECAKLHPH_00132 133037 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4944G>A None
M0183813 ECAKLHPH_00132 133050 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4957T>C None
M0183814 ECAKLHPH_00132 133079 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4986T>C None
M0183815 ECAKLHPH_00132 133081 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4988A>T None
M0183816 ECAKLHPH_00132 133084 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4991A>G None
M0183817 ECAKLHPH_00133 133095 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3696G>A None
M0183818 ECAKLHPH_00133 133168 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3769G>A None
M0183819 ECAKLHPH_00133 133187 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3788G>A None
M0183820 ECAKLHPH_00133 133208 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3809G>T None
M0183821 ECAKLHPH_00133 133209 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3810G>A None
M0183822 ECAKLHPH_00133 133251 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3852C>A None
M0183823 ECAKLHPH_00133 133262 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3863C>T None
M0183824 ECAKLHPH_00133 133264 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3865G>A None
M0183825 ECAKLHPH_00133 133293 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3894G>A None
M0183826 ECAKLHPH_00133 133351 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3952G>A None
M0183827 ECAKLHPH_00133 133361 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3962G>A None
M0183828 ECAKLHPH_00133 133365 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3966G>A None
M0183829 ECAKLHPH_00133 133390 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3991G>A None
M0183830 ECAKLHPH_00133 133429 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4030G>A None
M0183831 ECAKLHPH_00133 133519 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4120G>A None
M0183832 ECAKLHPH_00133 133568 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4169C>T None
M0183833 ECAKLHPH_00133 133589 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4190A>G None
M0183834 ECAKLHPH_00133 133598 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4199A>G None
M0183835 ECAKLHPH_00133 133601 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4202C>T None
M0183836 ECAKLHPH_00133 133652 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4253A>G None
M0183837 ECAKLHPH_00133 133879 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4480G>A None
M0183838 ECAKLHPH_00133 133880 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4481T>A None
M0183839 ECAKLHPH_00133 133882 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4483T>C None
M0183840 ECAKLHPH_00133 133924 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4525G>C None
M0183841 ECAKLHPH_00133 133957 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4558G>A None
M0183842 ECAKLHPH_00133 133967 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4568C>T None
M0183843 ECAKLHPH_00133 133997 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4598A>G None
M0183844 ECAKLHPH_00133 134049 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4650A>G None
M0183845 ECAKLHPH_00133 134057 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4658T>C None
M0183846 ECAKLHPH_00133 134106 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4707G>A None
M0183847 ECAKLHPH_00133 134124 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4725C>A None
M0183848 ECAKLHPH_00133 134125 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4726G>A None
M0183849 ECAKLHPH_00133 134127 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4728G>A None
M0183850 ECAKLHPH_00133 134128 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4729A>G None
M0183851 ECAKLHPH_00133 134146 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4747T>G None
M0183852 ECAKLHPH_00133 134147 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4748T>C None
M0183853 ECAKLHPH_00133 134166 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4767G>A None
M0183854 ECAKLHPH_00168 141110 3 Gut 0.15 protein_coding missense_variant MODERATE 472G>A Val158Ile
M0183855 ECAKLHPH_00168 141115 3 Gut 0.15 protein_coding synonymous_variant LOW 477G>A Arg159Arg
M0183856 ECAKLHPH_00177 148915 3 Gut 0.15 protein_coding synonymous_variant LOW 540T>G Ala180Ala
M0183857 ECAKLHPH_00180 152438 3 Gut 0.15 protein_coding missense_variant MODERATE 61G>A Glu21Lys
M0183858 ECAKLHPH_00176 152526 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4181A>C None
M0183859 ECAKLHPH_00177 153370 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3916A>G None
M0183860 ECAKLHPH_00183 153412 3 Gut 0.15 protein_coding synonymous_variant LOW 249T>C Cys83Cys
M0183861 ECAKLHPH_00183 153485 3 Gut 0.15 protein_coding missense_variant MODERATE 176A>G His59Arg
M0183862 ECAKLHPH_00183 153502 3 Gut 0.15 protein_coding synonymous_variant LOW 159A>G Pro53Pro
M0183863 ECAKLHPH_00200 163315 3 Gut 0.15 protein_coding missense_variant MODERATE 71G>A Arg24His
M0183864 ECAKLHPH_00207 170817 3 Gut 0.15 protein_coding synonymous_variant LOW 1758A>G Arg586Arg
M0183865 ECAKLHPH_00210 174276 3 Gut 0.15 protein_coding missense_variant MODERATE 1639C>G Gln547Glu
M0183866 ECAKLHPH_00210 175513 3 Gut 0.15 protein_coding missense_variant MODERATE 2876T>C Val959Ala
M0183867 ECAKLHPH_00212 176286 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -161C>T None
M0183868 ECAKLHPH_00214 177516 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -110T>C None
M0183869 ECAKLHPH_00214 177795 3 Gut 0.15 protein_coding missense_variant MODERATE 170G>A Arg57His
M0183870 ECAKLHPH_00214 177871 3 Gut 0.15 protein_coding synonymous_variant LOW 246A>G Gly82Gly
M0183871 ECAKLHPH_00214 177964 3 Gut 0.15 protein_coding synonymous_variant LOW 339A>G Ala113Ala
M0183872 ECAKLHPH_00214 178291 3 Gut 0.15 protein_coding synonymous_variant LOW 666C>T Asp222Asp
M0183873 ECAKLHPH_00214 178408 3 Gut 0.15 protein_coding synonymous_variant LOW 783C>T Ser261Ser
M0183874 ECAKLHPH_00214 178645 3 Gut 0.15 protein_coding synonymous_variant LOW 1020T>C Ser340Ser
M0183875 ECAKLHPH_00215 178946 3 Gut 0.15 protein_coding synonymous_variant LOW 96T>C Gly32Gly
M0183876 ECAKLHPH_00215 178964 3 Gut 0.15 protein_coding synonymous_variant LOW 114T>C Thr38Thr
M0183877 ECAKLHPH_00215 178967 3 Gut 0.15 protein_coding synonymous_variant LOW 117T>C Ile39Ile
M0183878 ECAKLHPH_00216 179072 3 Gut 0.15 protein_coding missense_variant MODERATE 73G>A Ala25Thr
M0183879 ECAKLHPH_00216 179495 3 Gut 0.15 protein_coding synonymous_variant LOW 496T>C Leu166Leu
M0183880 ECAKLHPH_00216 179501 3 Gut 0.15 protein_coding missense_variant MODERATE 502G>A Asp168Asn
M0183881 ECAKLHPH_00216 179506 3 Gut 0.15 protein_coding synonymous_variant LOW 507A>G Pro169Pro
M0183882 ECAKLHPH_00220 181784 3 Gut 0.15 protein_coding synonymous_variant LOW 42T>C Ile14Ile
M0183883 ECAKLHPH_00221 182364 3 Gut 0.15 protein_coding missense_variant MODERATE 239T>C Phe80Ser
M0183884 ECAKLHPH_00222 186859 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3154T>C None
M0183885 ECAKLHPH_00222 186862 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3157C>T None
M0183886 ECAKLHPH_00234 190680 3 Gut 0.15 protein_coding synonymous_variant LOW 420C>T Tyr140Tyr
M0183887 ECAKLHPH_00234 190725 3 Gut 0.15 protein_coding synonymous_variant LOW 375C>A Ala125Ala
M0183888 ECAKLHPH_00232 191606 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -2250C>G None
M0183889 ECAKLHPH_00236 192143 3 Gut 0.15 protein_coding synonymous_variant LOW 78A>G Arg26Arg
M0183890 ECAKLHPH_00240 194503 3 Gut 0.15 protein_coding missense_variant MODERATE 230T>A Val77Asp
M0183891 ECAKLHPH_00240 194701 3 Gut 0.15 protein_coding missense_variant MODERATE 428T>C Val143Ala
M0183892 ECAKLHPH_00234 194738 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3639A>G None
M0183893 ECAKLHPH_00234 194743 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3644A>G None
M0183894 ECAKLHPH_00241 194909 3 Gut 0.15 protein_coding synonymous_variant LOW 54A>C Val18Val
M0183895 ECAKLHPH_00241 194970 3 Gut 0.15 protein_coding missense_variant MODERATE 115G>A Ala39Thr
M0183896 ECAKLHPH_00241 194992 3 Gut 0.15 protein_coding missense_variant MODERATE 137G>C Ser46Thr
M0183897 ECAKLHPH_00241 194995 3 Gut 0.15 protein_coding missense_variant MODERATE 140A>G Asn47Ser
M0183898 ECAKLHPH_00241 194996 3 Gut 0.15 protein_coding synonymous_variant LOW 141T>C Asn47Asn
M0183899 ECAKLHPH_00241 195000 3 Gut 0.15 protein_coding missense_variant MODERATE 145T>G Ser49Ala
M0183900 ECAKLHPH_00241 195002 3 Gut 0.15 protein_coding synonymous_variant LOW 147T>C Ser49Ser
M0183901 ECAKLHPH_00241 195009 3 Gut 0.15 protein_coding missense_variant MODERATE 154G>A Gly52Arg
M0183902 ECAKLHPH_00241 195010 3 Gut 0.15 protein_coding missense_variant MODERATE 155G>C Gly52Ala
M0183903 ECAKLHPH_00241 195048 3 Gut 0.15 protein_coding missense_variant MODERATE 193T>C Ser65Pro
M0183904 ECAKLHPH_00241 195077 3 Gut 0.15 protein_coding synonymous_variant LOW 222T>C Gly74Gly
M0183905 ECAKLHPH_00241 195079 3 Gut 0.15 protein_coding missense_variant MODERATE 224G>A Gly75Asp
M0183906 ECAKLHPH_00241 195111 3 Gut 0.15 protein_coding missense_variant MODERATE 256G>A Glu86Lys
M0183907 ECAKLHPH_00241 195117 3 Gut 0.15 protein_coding missense_variant MODERATE 262A>C Lys88Gln
M0183908 ECAKLHPH_00241 195120 3 Gut 0.15 protein_coding missense_variant MODERATE 265G>A Asp89Asn
M0183909 ECAKLHPH_00241 195168 3 Gut 0.15 protein_coding missense_variant MODERATE 313G>A Ala105Thr
M0183910 ECAKLHPH_00241 195171 3 Gut 0.15 protein_coding missense_variant MODERATE 316G>A Gly106Ser
M0183911 ECAKLHPH_00241 195178 3 Gut 0.15 protein_coding missense_variant MODERATE 323C>A Thr108Lys
M0183912 ECAKLHPH_00168 141820 3 Gut 0.15 protein_coding synonymous_variant LOW 1182C>T Val394Val
M0183913 ECAKLHPH_00171 143048 3 Gut 0.15 protein_coding missense_variant MODERATE 1G>T Val1Leu
M0183914 ECAKLHPH_00171 143054 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -6G>A None
M0183915 ECAKLHPH_00171 143070 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -22G>A None
M0183916 ECAKLHPH_00171 143072 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -24A>G None
M0183917 ECAKLHPH_00171 143073 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -25C>T None
M0183918 ECAKLHPH_00171 143074 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -26G>A None
M0183919 ECAKLHPH_00171 143075 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -27G>A None
M0183920 ECAKLHPH_00171 143083 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -35G>A None
M0183921 ECAKLHPH_00171 143275 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -227A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term