Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C803
  Reference Plasmid   NZ_CP065714.1
  Reference Plasmid Size   426536
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0101779 BCMHBGAK_00379 346562 7 Skin 0.07 protein_coding synonymous_variant LOW 1035C>T Asp345Asp
M0101780 BCMHBGAK_00394 361736 3 Skin 0.03 protein_coding missense_variant MODERATE 1774G>A Asp592Asn
M0101781 BCMHBGAK_00394 361776 3 Skin 0.03 protein_coding synonymous_variant LOW 1734C>T Thr578Thr
M0101782 BCMHBGAK_00394 361782 3 Skin 0.03 protein_coding synonymous_variant LOW 1728C>T Ala576Ala
M0101783 BCMHBGAK_00398 366807 3 Skin 0.03 protein_coding synonymous_variant LOW 1560T>C Val520Val
M0101784 BCMHBGAK_00398 366819 3 Skin 0.03 protein_coding synonymous_variant LOW 1548C>T Val516Val
M0101785 BCMHBGAK_00398 366822 3 Skin 0.03 protein_coding synonymous_variant LOW 1545C>A Val515Val
M0101786 BCMHBGAK_00398 366825 3 Skin 0.03 protein_coding synonymous_variant LOW 1542G>C Val514Val
M0101787 BCMHBGAK_00398 366831 3 Skin 0.03 protein_coding synonymous_variant LOW 1536C>G Ala512Ala
M0101788 BCMHBGAK_00398 366834 3 Skin 0.03 protein_coding synonymous_variant LOW 1533C>G Leu511Leu
M0101789 BCMHBGAK_00398 366837 3 Skin 0.03 protein_coding synonymous_variant LOW 1530A>G Gly510Gly
M0101790 BCMHBGAK_00398 366959 3 Skin 0.03 protein_coding missense_variant MODERATE 1408T>G Phe470Val
M0101791 BCMHBGAK_00398 366978 3 Skin 0.03 protein_coding synonymous_variant LOW 1389C>T Phe463Phe
M0101792 BCMHBGAK_00398 366987 3 Skin 0.03 protein_coding synonymous_variant LOW 1380C>G Thr460Thr
M0101793 BCMHBGAK_00398 367005 3 Skin 0.03 protein_coding synonymous_variant LOW 1362C>T Gly454Gly
M0101794 BCMHBGAK_00398 367020 3 Skin 0.03 protein_coding synonymous_variant LOW 1347A>G Ala449Ala
M0101795 BCMHBGAK_00398 367047 4 Skin 0.04 protein_coding synonymous_variant LOW 1320A>G Gly440Gly
M0101796 BCMHBGAK_00398 367083 4 Skin 0.04 protein_coding synonymous_variant LOW 1284T>G Val428Val
M0101797 BCMHBGAK_00398 367089 4 Skin 0.04 protein_coding synonymous_variant LOW 1278C>G Arg426Arg
M0101798 BCMHBGAK_00398 367107 4 Skin 0.04 protein_coding missense_variant MODERATE 1260C>G Asp420Glu
M0101799 BCMHBGAK_00398 367125 4 Skin 0.04 protein_coding synonymous_variant LOW 1242A>G Ala414Ala
M0101800 BCMHBGAK_00398 367140 3 Skin 0.03 protein_coding synonymous_variant LOW 1227C>T Val409Val
M0101801 BCMHBGAK_00398 367206 3 Skin 0.03 protein_coding synonymous_variant LOW 1161G>A Glu387Glu
M0101802 BCMHBGAK_00398 367221 3 Skin 0.03 protein_coding synonymous_variant LOW 1146C>T Pro382Pro
M0101803 BCMHBGAK_00398 367239 3 Skin 0.03 protein_coding synonymous_variant LOW 1128A>G Ala376Ala
M0101804 BCMHBGAK_00398 367245 3 Skin 0.03 protein_coding synonymous_variant LOW 1122T>C Asp374Asp
M0101805 BCMHBGAK_00398 367253 3 Skin 0.03 protein_coding missense_variant MODERATE 1114T>C Phe372Leu
M0101806 BCMHBGAK_00398 367263 3 Skin 0.03 protein_coding synonymous_variant LOW 1104G>A Val368Val
M0101807 BCMHBGAK_00398 367266 3 Skin 0.03 protein_coding synonymous_variant LOW 1101G>A Thr367Thr
M0101808 BCMHBGAK_00398 367268 3 Skin 0.03 protein_coding missense_variant MODERATE 1099A>G Thr367Ala
M0101809 BCMHBGAK_00398 367296 3 Skin 0.03 protein_coding synonymous_variant LOW 1071A>G Ala357Ala
M0101810 BCMHBGAK_00398 367313 3 Skin 0.03 protein_coding missense_variant MODERATE 1054G>T Ala352Ser
M0101811 BCMHBGAK_00398 367332 3 Skin 0.03 protein_coding synonymous_variant LOW 1035C>G Ala345Ala
M0101812 BCMHBGAK_00398 367347 3 Skin 0.03 protein_coding synonymous_variant LOW 1020C>T Gly340Gly
M0101813 BCMHBGAK_00398 367377 3 Skin 0.03 protein_coding synonymous_variant LOW 990G>A Thr330Thr
M0101814 BCMHBGAK_00398 367383 3 Skin 0.03 protein_coding synonymous_variant LOW 984A>G Glu328Glu
M0101815 BCMHBGAK_00398 367413 3 Skin 0.03 protein_coding synonymous_variant LOW 954A>G Ser318Ser
M0101816 BCMHBGAK_00398 367431 3 Skin 0.03 protein_coding synonymous_variant LOW 936A>G Ala312Ala
M0101817 BCMHBGAK_00398 367437 3 Skin 0.03 protein_coding synonymous_variant LOW 930G>C Arg310Arg
M0101818 BCMHBGAK_00398 367449 3 Skin 0.03 protein_coding synonymous_variant LOW 918T>C Arg306Arg
M0101819 BCMHBGAK_00398 367455 3 Skin 0.03 protein_coding synonymous_variant LOW 912C>G Ala304Ala
M0101820 BCMHBGAK_00398 367461 3 Skin 0.03 protein_coding synonymous_variant LOW 906C>G Ala302Ala
M0101821 BCMHBGAK_00398 367518 3 Skin 0.03 protein_coding missense_variant MODERATE 849G>A Met283Ile
M0101822 BCMHBGAK_00398 367530 3 Skin 0.03 protein_coding synonymous_variant LOW 837T>C Pro279Pro
M0101823 BCMHBGAK_00398 367533 3 Skin 0.03 protein_coding synonymous_variant LOW 834C>T His278His
M0101824 BCMHBGAK_00398 367536 3 Skin 0.03 protein_coding synonymous_variant LOW 831C>T Arg277Arg
M0101825 BCMHBGAK_00398 367608 3 Skin 0.03 protein_coding synonymous_variant LOW 759A>G Ala253Ala
M0101826 BCMHBGAK_00398 368217 6 Skin 0.06 protein_coding synonymous_variant LOW 150C>A Gly50Gly
M0101827 BCMHBGAK_00399 368370 6 Skin 0.06 protein_coding missense_variant MODERATE 623A>G Gln208Arg
M0101828 BCMHBGAK_00395 369055 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4364A>T None
M0101829 BCMHBGAK_00400 369109 3 Skin 0.03 protein_coding synonymous_variant LOW 39G>C Thr13Thr
M0101830 BCMHBGAK_00400 369115 3 Skin 0.03 protein_coding synonymous_variant LOW 45A>G Thr15Thr
M0101831 BCMHBGAK_00400 369118 3 Skin 0.03 protein_coding synonymous_variant LOW 48A>G Lys16Lys
M0101832 BCMHBGAK_00400 369133 3 Skin 0.03 protein_coding synonymous_variant LOW 63G>C Arg21Arg
M0101833 BCMHBGAK_00400 369157 3 Skin 0.03 protein_coding synonymous_variant LOW 87G>C Leu29Leu
M0101834 BCMHBGAK_00400 369160 3 Skin 0.03 protein_coding synonymous_variant LOW 90C>A Arg30Arg
M0101835 BCMHBGAK_00400 369169 3 Skin 0.03 protein_coding synonymous_variant LOW 99G>T Pro33Pro
M0101836 BCMHBGAK_00400 369184 3 Skin 0.03 protein_coding synonymous_variant LOW 114C>T Gly38Gly
M0101837 BCMHBGAK_00400 369187 3 Skin 0.03 protein_coding synonymous_variant LOW 117T>C Arg39Arg
M0101838 BCMHBGAK_00400 369196 3 Skin 0.03 protein_coding synonymous_variant LOW 126T>C Tyr42Tyr
M0101839 BCMHBGAK_00400 369205 3 Skin 0.03 protein_coding synonymous_variant LOW 135C>T Ser45Ser
M0101840 BCMHBGAK_00400 369211 3 Skin 0.03 protein_coding synonymous_variant LOW 141C>T Ile47Ile
M0101841 BCMHBGAK_00400 369247 3 Skin 0.03 protein_coding synonymous_variant LOW 177C>T Leu59Leu
M0101842 BCMHBGAK_00400 369253 3 Skin 0.03 protein_coding synonymous_variant LOW 183T>C Phe61Phe
M0101843 BCMHBGAK_00400 369256 3 Skin 0.03 protein_coding synonymous_variant LOW 186G>C Ser62Ser
M0101844 BCMHBGAK_00400 369265 3 Skin 0.03 protein_coding synonymous_variant LOW 195A>G Glu65Glu
M0101845 BCMHBGAK_00400 369268 3 Skin 0.03 protein_coding synonymous_variant LOW 198A>C Ile66Ile
M0101846 BCMHBGAK_00400 369271 3 Skin 0.03 protein_coding synonymous_variant LOW 201A>T Arg67Arg
M0101847 BCMHBGAK_00400 369352 3 Skin 0.03 protein_coding synonymous_variant LOW 282T>G Val94Val
M0101848 BCMHBGAK_00400 369361 3 Skin 0.03 protein_coding synonymous_variant LOW 291G>A Arg97Arg
M0101849 BCMHBGAK_00400 369484 3 Skin 0.03 protein_coding synonymous_variant LOW 414G>A Gln138Gln
M0101850 BCMHBGAK_00401 369490 3 Skin 0.03 protein_coding synonymous_variant LOW 1221C>T Asp407Asp
M0101851 BCMHBGAK_00401 369496 3 Skin 0.03 protein_coding synonymous_variant LOW 1215A>G Leu405Leu
M0101852 BCMHBGAK_00401 369505 3 Skin 0.03 protein_coding missense_variant MODERATE 1206C>G Asp402Glu
M0101853 BCMHBGAK_00401 369685 4 Skin 0.04 protein_coding synonymous_variant LOW 1026C>T Val342Val
M0101854 BCMHBGAK_00401 369910 3 Skin 0.03 protein_coding synonymous_variant LOW 801T>C Ile267Ile
M0101855 BCMHBGAK_00401 369926 3 Skin 0.03 protein_coding missense_variant MODERATE 785C>T Thr262Ile
M0101856 BCMHBGAK_00401 369928 3 Skin 0.03 protein_coding synonymous_variant LOW 783A>G Thr261Thr
M0101857 BCMHBGAK_00401 369945 3 Skin 0.03 protein_coding missense_variant MODERATE 766G>A Val256Ile
M0101858 BCMHBGAK_00401 369946 5 Skin 0.05 protein_coding synonymous_variant LOW 765A>T Arg255Arg
M0101859 BCMHBGAK_00401 369952 3 Skin 0.03 protein_coding synonymous_variant LOW 759C>T Gly253Gly
M0101860 BCMHBGAK_00403 371209 7 Skin 0.07 protein_coding synonymous_variant LOW 375T>C Ala125Ala
M0101861 BCMHBGAK_00439 404336 6 Skin 0.06 protein_coding missense_variant MODERATE 135A>C Glu45Asp
M0101862 BCMHBGAK_00456 418463 6 Skin 0.06 protein_coding synonymous_variant LOW 1203T>C Ile401Ile
M0101863 BCMHBGAK_00456 418466 6 Skin 0.06 protein_coding synonymous_variant LOW 1206C>T Thr402Thr
M0101864 BCMHBGAK_00456 418470 6 Skin 0.06 protein_coding synonymous_variant LOW 1210T>C Leu404Leu
M0101865 BCMHBGAK_00456 418484 6 Skin 0.06 protein_coding synonymous_variant LOW 1224A>C Ala408Ala
M0101866 BCMHBGAK_00456 418487 6 Skin 0.06 protein_coding synonymous_variant LOW 1227A>C Gly409Gly
M0101867 BCMHBGAK_00456 418505 6 Skin 0.06 protein_coding synonymous_variant LOW 1245G>A Val415Val
M0101868 BCMHBGAK_00456 418514 6 Skin 0.06 protein_coding synonymous_variant LOW 1254T>C Asn418Asn
M0101869 BCMHBGAK_00456 418930 5 Skin 0.05 protein_coding missense_variant MODERATE 1670C>G Ala557Gly
M0101870 BCMHBGAK_00456 419156 7 Skin 0.07 protein_coding synonymous_variant LOW 1896C>T Ser632Ser
M0101871 BCMHBGAK_00456 419315 7 Skin 0.07 protein_coding synonymous_variant LOW 2055T>C Asn685Asn
M0101872 BCMHBGAK_00463 422856 7 Skin 0.07 protein_coding synonymous_variant LOW 459T>C Ala153Ala
M0101873 BCMHBGAK_00464 423585 7 Skin 0.07 protein_coding missense_variant MODERATE 182A>G Asp61Gly
M0101874 BCMHBGAK_00467 425589 7 Skin 0.07 protein_coding missense_variant MODERATE 777G>C Leu259Phe
M0101875 BCMHBGAK_00467 425591 7 Skin 0.07 protein_coding synonymous_variant LOW 775T>C Leu259Leu
M0101876 BCMHBGAK_00467 425595 7 Skin 0.07 protein_coding synonymous_variant LOW 771C>A Gly257Gly
M0101877 BCMHBGAK_00452 414045 9 Skin 0.09 protein_coding synonymous_variant LOW 1068T>C Ile356Ile
M0101878 BCMHBGAK_00449 414657 8 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3707A>T None
M0101879 BCMHBGAK_00454 414928 8 Skin 0.08 protein_coding synonymous_variant LOW 75A>G Ala25Ala
M0101880 BCMHBGAK_00454 415516 7 Skin 0.07 protein_coding synonymous_variant LOW 663C>T Gly221Gly
M0101881 BCMHBGAK_00455 416352 6 Skin 0.06 protein_coding synonymous_variant LOW 243C>T Ala81Ala
M0101882 BCMHBGAK_00093 77703 3 Skin 0.03 protein_coding missense_variant MODERATE 287C>T Ala96Val
M0101883 BCMHBGAK_00088 78022 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4184C>G None
M0101884 BCMHBGAK_00094 78454 3 Skin 0.03 protein_coding missense_variant MODERATE 167C>T Ala56Val
M0101885 BCMHBGAK_00437 403427 6 Skin 0.06 protein_coding missense_variant MODERATE 500T>G Phe167Cys
M0101886 BCMHBGAK_00438 403912 6 Skin 0.06 protein_coding missense_variant MODERATE 256A>G Ile86Val
M0101887 BCMHBGAK_00443 407050 8 Skin 0.08 protein_coding missense_variant MODERATE 31G>C Ala11Pro
M0101888 BCMHBGAK_00401 370431 3 Skin 0.03 protein_coding missense_variant MODERATE 280G>A Ala94Thr
M0101889 BCMHBGAK_00403 371239 3 Skin 0.03 protein_coding synonymous_variant LOW 345T>C Ile115Ile
M0101890 BCMHBGAK_00254 232436 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4448G>A None
M0101891 BCMHBGAK_00255 233782 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4517C>T None
M0101892 BCMHBGAK_00255 233795 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4530T>C None
M0101893 BCMHBGAK_00255 233897 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4632G>A None
M0101894 BCMHBGAK_00258 234281 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2017C>G None
M0101895 BCMHBGAK_00261 234753 3 Skin 0.03 protein_coding synonymous_variant LOW 471G>C Ala157Ala
M0101896 BCMHBGAK_00180 157636 4 Skin 0.04 protein_coding synonymous_variant LOW 225A>G Gly75Gly
M0101897 BCMHBGAK_00014 12597 3 Skin 0.03 protein_coding missense_variant MODERATE 623A>G Gln208Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
BCMHBGAK_00344 Arsenic (As), Antimony (Sb) 74.4 7.5e-176 1 426 0.9953 0.9930 experiment
BCMHBGAK_00344 Arsenic (As), Antimony (Sb) 75.1 2.6e-177 1 426 0.9953 0.9930 prediction
BCMHBGAK_00351 Mercury (Hg) 100 2.7e-75 1 140 1.0000 1.0000 prediction
BCMHBGAK_00413 Copper (Cu) 76.9 1.3e-127 1 308 1.0000 1.0000 prediction
BCMHBGAK_00414 Copper (Cu) 82 2.1e-47 1 122 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BCMHBGAK_00066 BAV66556.1|GT4 99.2 0 1 769 1 1
BCMHBGAK_00067 BAV66555.1|GH130 97.8 0 1 447 1 1
BCMHBGAK_00142 BAV66493.1|GH23 94.4 8.63e-206 1 323 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BCMHBGAK_00344 3.A.4.1.1 73.9 2.8e-174 1 426 0.9953 0.9930 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.4 The Arsenite-Antimonite (ArsAB) Efflux Family