Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C804
  Reference Plasmid   NZ_CP065716.1
  Reference Plasmid Size   21798
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0101898 DMODDNCL_00009 10007 3 Skin 0.33 protein_coding synonymous_variant LOW 336G>A Gln112Gln
M0101899 DMODDNCL_00009 10052 3 Skin 0.33 protein_coding synonymous_variant LOW 381G>A Glu127Glu
M0101900 DMODDNCL_00009 10055 3 Skin 0.33 protein_coding synonymous_variant LOW 384T>C Arg128Arg
M0101901 DMODDNCL_00009 10079 3 Skin 0.33 protein_coding synonymous_variant LOW 408T>A Ala136Ala
M0101902 DMODDNCL_00009 10082 3 Skin 0.33 protein_coding synonymous_variant LOW 411C>T Arg137Arg
M0101903 DMODDNCL_00009 10085 3 Skin 0.33 protein_coding synonymous_variant LOW 414A>C Ala138Ala
M0101904 DMODDNCL_00009 10091 3 Skin 0.33 protein_coding synonymous_variant LOW 420A>G Gly140Gly
M0101905 DMODDNCL_00009 10103 3 Skin 0.33 protein_coding synonymous_variant LOW 432G>A Gly144Gly
M0101906 DMODDNCL_00009 10106 3 Skin 0.33 protein_coding synonymous_variant LOW 435T>A Arg145Arg
M0101907 DMODDNCL_00009 10111 3 Skin 0.33 protein_coding missense_variant MODERATE 440C>G Pro147Arg
M0101908 DMODDNCL_00009 10133 3 Skin 0.33 protein_coding synonymous_variant LOW 462C>T Arg154Arg
M0101909 DMODDNCL_00009 10148 3 Skin 0.33 protein_coding synonymous_variant LOW 477G>A Glu159Glu
M0101910 DMODDNCL_00009 10157 3 Skin 0.33 protein_coding synonymous_variant LOW 486G>C Thr162Thr
M0101911 DMODDNCL_00009 10163 3 Skin 0.33 protein_coding synonymous_variant LOW 492C>T Gly164Gly
M0101912 DMODDNCL_00009 10187 3 Skin 0.33 protein_coding synonymous_variant LOW 516G>A Ala172Ala
M0101913 DMODDNCL_00009 10191 3 Skin 0.33 protein_coding missense_variant MODERATE 520C>T Leu174Phe
M0101914 DMODDNCL_00009 10193 3 Skin 0.33 protein_coding synonymous_variant LOW 522C>G Leu174Leu
M0101915 DMODDNCL_00009 10205 3 Skin 0.33 protein_coding synonymous_variant LOW 534T>C Ser178Ser
M0101916 DMODDNCL_00009 10214 3 Skin 0.33 protein_coding synonymous_variant LOW 543C>G Thr181Thr
M0101917 DMODDNCL_00010 10369 3 Skin 0.33 protein_coding synonymous_variant LOW 96G>T Gly32Gly
M0101918 DMODDNCL_00010 10411 3 Skin 0.33 protein_coding synonymous_variant LOW 138G>A Ala46Ala
M0101919 DMODDNCL_00010 10471 3 Skin 0.33 protein_coding synonymous_variant LOW 198G>C Leu66Leu
M0101920 DMODDNCL_00010 10484 3 Skin 0.33 protein_coding missense_variant MODERATE 211C>G Gln71Glu
M0101921 DMODDNCL_00010 10501 3 Skin 0.33 protein_coding synonymous_variant LOW 228C>T Ile76Ile
M0101922 DMODDNCL_00010 10504 3 Skin 0.33 protein_coding synonymous_variant LOW 231C>T Val77Val
M0101923 DMODDNCL_00010 10528 3 Skin 0.33 protein_coding synonymous_variant LOW 255C>T Gly85Gly
M0101924 DMODDNCL_00010 10534 4 Skin 0.44 protein_coding synonymous_variant LOW 261T>C Asn87Asn
M0101925 DMODDNCL_00010 10544 3 Skin 0.33 protein_coding missense_variant MODERATE 271C>T Pro91Ser
M0101926 DMODDNCL_00010 10579 3 Skin 0.33 protein_coding synonymous_variant LOW 306A>G Ser102Ser
M0101927 DMODDNCL_00010 10592 3 Skin 0.33 protein_coding missense_variant MODERATE 319C>T His107Tyr
M0101928 DMODDNCL_00010 10597 3 Skin 0.33 protein_coding synonymous_variant LOW 324G>A Glu108Glu
M0101929 DMODDNCL_00010 10618 3 Skin 0.33 protein_coding synonymous_variant LOW 345C>G Gly115Gly
M0101930 DMODDNCL_00010 10630 3 Skin 0.33 protein_coding synonymous_variant LOW 357C>T Leu119Leu
M0101931 DMODDNCL_00010 10647 3 Skin 0.33 protein_coding missense_variant MODERATE 374G>A Arg125Gln
M0101932 DMODDNCL_00010 10653 3 Skin 0.33 protein_coding missense_variant MODERATE 380G>A Gly127Asp
M0101933 DMODDNCL_00010 10660 3 Skin 0.33 protein_coding synonymous_variant LOW 387G>A Pro129Pro
M0101934 DMODDNCL_00010 10810 3 Skin 0.33 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0101935 DMODDNCL_00010 10870 3 Skin 0.33 protein_coding synonymous_variant LOW 597G>T Leu199Leu
M0101936 DMODDNCL_00010 10876 3 Skin 0.33 protein_coding synonymous_variant LOW 603A>G Ala201Ala
M0101937 DMODDNCL_00010 10882 3 Skin 0.33 protein_coding synonymous_variant LOW 609G>A Pro203Pro
M0101938 DMODDNCL_00010 10940 3 Skin 0.33 protein_coding missense_variant MODERATE 667C>T Pro223Ser
M0101939 DMODDNCL_00010 10942 3 Skin 0.33 protein_coding synonymous_variant LOW 669C>G Pro223Pro
M0101940 DMODDNCL_00010 10948 3 Skin 0.33 protein_coding synonymous_variant LOW 675C>T Pro225Pro
M0101941 DMODDNCL_00010 10962 3 Skin 0.33 protein_coding missense_variant MODERATE 689T>G Ile230Ser
M0101942 DMODDNCL_00010 10975 3 Skin 0.33 protein_coding synonymous_variant LOW 702G>A Glu234Glu
M0101943 DMODDNCL_00010 10979 3 Skin 0.33 protein_coding missense_variant MODERATE 706A>G Met236Val
M0101944 DMODDNCL_00010 11035 3 Skin 0.33 protein_coding synonymous_variant LOW 762C>T Gly254Gly
M0101945 DMODDNCL_00010 11044 3 Skin 0.33 protein_coding synonymous_variant LOW 771T>C Leu257Leu
M0101946 DMODDNCL_00010 11051 3 Skin 0.33 protein_coding missense_variant MODERATE 778G>A Val260Ile
M0101947 DMODDNCL_00010 11083 3 Skin 0.33 protein_coding synonymous_variant LOW 810T>C Phe270Phe
M0101948 DMODDNCL_00010 11102 3 Skin 0.33 protein_coding missense_variant MODERATE 829A>G Lys277Glu
M0101949 DMODDNCL_00010 11115 3 Skin 0.33 protein_coding missense_variant MODERATE 842A>T Lys281Ile
M0101950 DMODDNCL_00010 11122 3 Skin 0.33 protein_coding synonymous_variant LOW 849A>G Lys283Lys
M0101951 DMODDNCL_00010 11134 3 Skin 0.33 protein_coding synonymous_variant LOW 861C>T Arg287Arg
M0101952 DMODDNCL_00010 11209 3 Skin 0.33 protein_coding missense_variant MODERATE 936G>T Met312Ile
M0101953 DMODDNCL_00010 11233 3 Skin 0.33 protein_coding synonymous_variant LOW 960A>G Arg320Arg
M0101954 DMODDNCL_00010 11254 3 Skin 0.33 protein_coding synonymous_variant LOW 981T>C Leu327Leu
M0101955 DMODDNCL_00010 11257 3 Skin 0.33 protein_coding missense_variant MODERATE 984C>G Ile328Met
M0101956 DMODDNCL_00010 11259 3 Skin 0.33 protein_coding missense_variant MODERATE 986A>C Asn329Thr
M0101957 DMODDNCL_00010 11269 3 Skin 0.33 protein_coding synonymous_variant LOW 996C>A Leu332Leu
M0101958 DMODDNCL_00010 11302 3 Skin 0.33 protein_coding synonymous_variant LOW 1029T>C Ile343Ile
M0101959 DMODDNCL_00010 11341 3 Skin 0.33 protein_coding synonymous_variant LOW 1068G>A Gly356Gly
M0101960 DMODDNCL_00010 11348 3 Skin 0.33 protein_coding missense_variant MODERATE 1075T>A Ser359Thr
M0101961 DMODDNCL_00010 11349 3 Skin 0.33 protein_coding missense_variant MODERATE 1076C>T Ser359Leu
M0101962 DMODDNCL_00010 11350 3 Skin 0.33 protein_coding synonymous_variant LOW 1077A>G Ser359Ser
M0101963 DMODDNCL_00010 11383 3 Skin 0.33 protein_coding synonymous_variant LOW 1110T>G Val370Val
M0101964 DMODDNCL_00010 11444 3 Skin 0.33 protein_coding missense_variant MODERATE 1171G>A Val391Ile
M0101965 DMODDNCL_00010 11452 3 Skin 0.33 protein_coding missense_variant MODERATE 1179G>A Met393Ile
M0101966 DMODDNCL_00010 11488 3 Skin 0.33 protein_coding synonymous_variant LOW 1215T>G Thr405Thr
M0101967 DMODDNCL_00010 11590 3 Skin 0.33 protein_coding synonymous_variant LOW 1317T>C Thr439Thr
M0101968 DMODDNCL_00010 11596 3 Skin 0.33 protein_coding missense_variant MODERATE 1323A>G Ile441Met
M0101969 DMODDNCL_00008 11635 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2093G>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term