Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C814
  Reference Plasmid   NZ_CP066654.1
  Reference Plasmid Size   134270
  Reference Plasmid GC Content   0.35
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0183984 CKKHAHLG_00076 70400 3 Gut 1.00 protein_coding missense_variant MODERATE 91A>G Asn31Asp
M0183985 CKKHAHLG_00076 70450 3 Gut 1.00 protein_coding missense_variant MODERATE 41C>A Thr14Lys
M0183986 CKKHAHLG_00077 70692 3 Gut 1.00 protein_coding synonymous_variant LOW 657C>T Asp219Asp
M0183987 CKKHAHLG_00077 70713 3 Gut 1.00 protein_coding synonymous_variant LOW 636T>C Ala212Ala
M0183988 CKKHAHLG_00077 71328 3 Gut 1.00 protein_coding synonymous_variant LOW 21G>A Val7Val
M0183989 CKKHAHLG_00074 72195 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2628A>G None
M0183990 CKKHAHLG_00079 72370 3 Gut 1.00 protein_coding synonymous_variant LOW 678G>A Gly226Gly
M0183991 CKKHAHLG_00074 73126 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3559A>G None
M0183992 CKKHAHLG_00074 73137 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3570A>C None
M0183993 CKKHAHLG_00080 73444 3 Gut 1.00 protein_coding stop_gained HIGH 145C>T Arg49*
M0183994 CKKHAHLG_00080 73552 3 Gut 1.00 protein_coding missense_variant MODERATE 253T>C Phe85Leu
M0183995 CKKHAHLG_00080 73993 3 Gut 1.00 protein_coding missense_variant MODERATE 694T>G Cys232Gly
M0183996 CKKHAHLG_00080 74093 3 Gut 1.00 protein_coding missense_variant MODERATE 794G>A Gly265Asp
M0183997 CKKHAHLG_00080 74177 3 Gut 1.00 protein_coding missense_variant MODERATE 878C>T Thr293Ile
M0183998 CKKHAHLG_00075 74744 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4851T>G None
M0183999 CKKHAHLG_00081 76029 3 Gut 1.00 protein_coding missense_variant MODERATE 85A>G Ile29Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CKKHAHLG_00024 PHI:5205 HMPREF0351_10118 (WxL locusC) 100 1e-226 1 392 1.0000 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence
CKKHAHLG_00036 PHI:5205 HMPREF0351_10118 (WxL locusC) 77.9 2e-23 13 80 0.8095 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence
CKKHAHLG_00073 PHI:5205 HMPREF0351_10118 (WxL locusC) 100 1e-226 1 392 1.0000 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence
CKKHAHLG_00080 PHI:5205 HMPREF0351_10118 (WxL locusC) 70.7 2.9e-162 1 388 0.9974 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence
CKKHAHLG_00111 PHI:5205 HMPREF0351_10118 (WxL locusC) 100 1.1e-29 44 106 0.5943 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence
CKKHAHLG_00116 PHI:5205 HMPREF0351_10118 (WxL locusC) 74 2.4e-172 1 392 0.9899 1.0000 rodents endocarditis involved in bile salt stress and endocarditis pathogenesis reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CKKHAHLG_00043 QMV94891.1|GH32 100 0 1 479 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CKKHAHLG_00023 1.C.90.3.3 100 2.3e-38 1 87 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.90 The Carnocyclin A (Carnocyclin) Family