Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C827
  Reference Plasmid   NZ_CP068217.1
  Reference Plasmid Size   104542
  Reference Plasmid GC Content   0.31
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0103669 ELHKJPOM_00091 80386 6 Skin 0.17 protein_coding missense_variant MODERATE 960C>A Asp320Glu
M0103670 ELHKJPOM_00091 80396 6 Skin 0.17 protein_coding missense_variant MODERATE 970A>G Ile324Val
M0103671 ELHKJPOM_00091 80413 6 Skin 0.17 protein_coding synonymous_variant LOW 987T>C His329His
M0103672 ELHKJPOM_00091 80434 6 Skin 0.17 protein_coding synonymous_variant LOW 1008C>T Tyr336Tyr
M0103673 ELHKJPOM_00091 80500 6 Skin 0.17 protein_coding synonymous_variant LOW 1074C>T Asp358Asp
M0103674 ELHKJPOM_00091 80591 6 Skin 0.17 protein_coding missense_variant MODERATE 1165A>G Ser389Gly
M0103675 ELHKJPOM_00091 80625 6 Skin 0.17 protein_coding missense_variant MODERATE 1199A>G Lys400Arg
M0103676 ELHKJPOM_00091 80647 6 Skin 0.17 protein_coding synonymous_variant LOW 1221T>C His407His
M0103677 ELHKJPOM_00091 80738 6 Skin 0.17 protein_coding missense_variant MODERATE 1312A>G Asn438Asp
M0103678 ELHKJPOM_00091 80747 6 Skin 0.17 protein_coding missense_variant MODERATE 1321T>C Phe441Leu
M0103679 ELHKJPOM_00088 80772 6 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2827C>T None
M0103680 ELHKJPOM_00092 87282 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4701G>C None
M0103681 ELHKJPOM_00092 87392 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4811C>T None
M0103682 ELHKJPOM_00095 87452 13 Skin 0.36 protein_coding synonymous_variant LOW 468A>G Glu156Glu
M0103683 ELHKJPOM_00095 87459 15 Skin 0.42 protein_coding missense_variant MODERATE 461T>G Val154Gly
M0103684 ELHKJPOM_00095 87518 4 Skin 0.11 protein_coding synonymous_variant LOW 402A>G Val134Val
M0103685 ELHKJPOM_00095 87548 3 Skin 0.08 protein_coding synonymous_variant LOW 372A>T Ile124Ile
M0103686 ELHKJPOM_00095 87573 15 Skin 0.42 protein_coding missense_variant MODERATE 347A>G Asp116Gly
M0103687 ELHKJPOM_00095 87585 6 Skin 0.17 protein_coding missense_variant MODERATE 335G>A Ser112Asn
M0103688 ELHKJPOM_00095 87609 4 Skin 0.11 protein_coding missense_variant MODERATE 311G>A Gly104Asp
M0103689 ELHKJPOM_00095 87611 12 Skin 0.33 protein_coding synonymous_variant LOW 309G>A Lys103Lys
M0103690 ELHKJPOM_00095 87661 16 Skin 0.44 protein_coding missense_variant MODERATE 259A>T Arg87Trp
M0103691 ELHKJPOM_00095 87690 16 Skin 0.44 protein_coding missense_variant MODERATE 230G>A Ser77Asn
M0103692 ELHKJPOM_00095 87716 8 Skin 0.22 protein_coding synonymous_variant LOW 204C>T Ala68Ala
M0103693 ELHKJPOM_00095 87776 19 Skin 0.53 protein_coding synonymous_variant LOW 144A>G Gly48Gly
M0103694 ELHKJPOM_00095 87818 18 Skin 0.50 protein_coding synonymous_variant LOW 102A>G Glu34Glu
M0103695 ELHKJPOM_00095 87831 17 Skin 0.47 protein_coding missense_variant MODERATE 89A>C Lys30Thr
M0103696 ELHKJPOM_00095 87928 18 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -9A>G None
M0103697 ELHKJPOM_00096 87956 16 Skin 0.44 protein_coding missense_variant MODERATE 1417G>A Val473Ile
M0103698 ELHKJPOM_00096 87975 14 Skin 0.39 protein_coding missense_variant MODERATE 1398T>G Asp466Glu
M0103699 ELHKJPOM_00096 88188 14 Skin 0.39 protein_coding synonymous_variant LOW 1185C>T Asn395Asn
M0103700 ELHKJPOM_00096 88277 15 Skin 0.42 protein_coding missense_variant MODERATE 1096A>C Asn366His
M0103701 ELHKJPOM_00096 88305 17 Skin 0.47 protein_coding synonymous_variant LOW 1068G>A Lys356Lys
M0103702 ELHKJPOM_00096 88310 17 Skin 0.47 protein_coding missense_variant MODERATE 1063G>A Gly355Ser
M0103703 ELHKJPOM_00096 88328 17 Skin 0.47 protein_coding missense_variant MODERATE 1045A>G Ser349Gly
M0103704 ELHKJPOM_00096 88608 17 Skin 0.47 protein_coding synonymous_variant LOW 765T>G Leu255Leu
M0103705 ELHKJPOM_00096 88946 14 Skin 0.39 protein_coding missense_variant MODERATE 427G>A Val143Ile
M0103706 ELHKJPOM_00096 89168 19 Skin 0.53 protein_coding missense_variant MODERATE 205A>G Lys69Glu
M0103707 ELHKJPOM_00096 89172 20 Skin 0.56 protein_coding synonymous_variant LOW 201C>T Phe67Phe
M0103708 ELHKJPOM_00096 89239 16 Skin 0.44 protein_coding missense_variant MODERATE 134C>A Thr45Lys
M0103709 ELHKJPOM_00096 89274 18 Skin 0.50 protein_coding synonymous_variant LOW 99T>C Asn33Asn
M0103710 ELHKJPOM_00096 89283 18 Skin 0.50 protein_coding synonymous_variant LOW 90T>C Asp30Asp
M0103711 ELHKJPOM_00096 89326 21 Skin 0.58 protein_coding missense_variant MODERATE 47C>T Thr16Ile
M0103712 ELHKJPOM_00097 89471 21 Skin 0.58 protein_coding synonymous_variant LOW 1980T>A Ile660Ile
M0103713 ELHKJPOM_00097 89474 21 Skin 0.58 protein_coding synonymous_variant LOW 1977G>A Leu659Leu
M0103714 ELHKJPOM_00097 89477 21 Skin 0.58 protein_coding synonymous_variant LOW 1974C>G Gly658Gly
M0103715 ELHKJPOM_00097 89482 15 Skin 0.42 protein_coding missense_variant MODERATE 1969A>G Ile657Val
M0103716 ELHKJPOM_00097 89486 21 Skin 0.58 protein_coding synonymous_variant LOW 1965A>T Ala655Ala
M0103717 ELHKJPOM_00097 89492 21 Skin 0.58 protein_coding synonymous_variant LOW 1959T>A Ile653Ile
M0103718 ELHKJPOM_00097 89493 21 Skin 0.58 protein_coding missense_variant MODERATE 1958T>C Ile653Thr
M0103719 ELHKJPOM_00097 89494 21 Skin 0.58 protein_coding missense_variant MODERATE 1957A>G Ile653Val
M0103720 ELHKJPOM_00097 89495 21 Skin 0.58 protein_coding synonymous_variant LOW 1956T>C Gly652Gly
M0103721 ELHKJPOM_00097 89552 15 Skin 0.42 protein_coding synonymous_variant LOW 1899G>T Val633Val
M0103722 ELHKJPOM_00097 89597 18 Skin 0.50 protein_coding synonymous_variant LOW 1854T>C Ile618Ile
M0103723 ELHKJPOM_00097 89696 12 Skin 0.33 protein_coding synonymous_variant LOW 1755T>C Ser585Ser
M0103724 ELHKJPOM_00097 89746 12 Skin 0.33 protein_coding missense_variant MODERATE 1705G>A Asp569Asn
M0103725 ELHKJPOM_00097 89747 7 Skin 0.19 protein_coding synonymous_variant LOW 1704T>C Ser568Ser
M0103726 ELHKJPOM_00097 89798 11 Skin 0.31 protein_coding synonymous_variant LOW 1653C>T His551His
M0103727 ELHKJPOM_00097 89852 21 Skin 0.58 protein_coding synonymous_variant LOW 1599T>C Asp533Asp
M0103728 ELHKJPOM_00097 90022 20 Skin 0.56 protein_coding missense_variant MODERATE 1429A>G Asn477Asp
M0103729 ELHKJPOM_00097 90134 20 Skin 0.56 protein_coding synonymous_variant LOW 1317C>T Asn439Asn
M0103730 ELHKJPOM_00097 90377 21 Skin 0.58 protein_coding synonymous_variant LOW 1074C>T Asn358Asn
M0103731 ELHKJPOM_00097 90521 13 Skin 0.36 protein_coding synonymous_variant LOW 930T>G Ser310Ser
M0103732 ELHKJPOM_00097 90537 14 Skin 0.39 protein_coding missense_variant MODERATE 914G>T Ser305Ile
M0103733 ELHKJPOM_00097 90812 22 Skin 0.61 protein_coding synonymous_variant LOW 639T>C Ser213Ser
M0103734 ELHKJPOM_00097 90875 21 Skin 0.58 protein_coding synonymous_variant LOW 576T>C Arg192Arg
M0103735 ELHKJPOM_00097 91127 3 Skin 0.08 protein_coding synonymous_variant LOW 324C>T Gly108Gly
M0103736 ELHKJPOM_00097 91270 21 Skin 0.58 protein_coding missense_variant MODERATE 181A>C Met61Leu
M0103737 ELHKJPOM_00095 91484 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3565C>T None
M0103738 ELHKJPOM_00095 91485 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3566A>G None
M0103739 ELHKJPOM_00095 91510 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3591T>G None
M0103740 ELHKJPOM_00095 91525 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3606T>C None
M0103741 ELHKJPOM_00095 91540 4 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3621G>A None
M0103742 ELHKJPOM_00095 91541 9 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3622T>A None
M0103743 ELHKJPOM_00095 91553 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3634T>C None
M0103744 ELHKJPOM_00095 91566 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3647A>G None
M0103745 ELHKJPOM_00095 91580 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3661T>G None
M0103746 ELHKJPOM_00095 91581 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3662A>G None
M0103747 ELHKJPOM_00095 91618 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3699A>G None
M0103748 ELHKJPOM_00095 91634 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3715T>G None
M0103749 ELHKJPOM_00095 91635 9 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3716T>C None
M0103750 ELHKJPOM_00095 91648 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3729A>G None
M0103751 ELHKJPOM_00095 91687 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3768A>C None
M0103752 ELHKJPOM_00095 91696 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3777C>T None
M0103753 ELHKJPOM_00095 91711 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3792C>A None
M0103754 ELHKJPOM_00095 91727 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3808C>T None
M0103755 ELHKJPOM_00095 91728 13 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3809A>G None
M0103756 ELHKJPOM_00095 91760 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3841G>A None
M0103757 ELHKJPOM_00097 89582 4 Skin 0.11 protein_coding synonymous_variant LOW 1869C>T Thr623Thr
M0103758 ELHKJPOM_00097 90040 5 Skin 0.14 protein_coding missense_variant MODERATE 1411C>T His471Tyr
M0103759 ELHKJPOM_00097 91109 3 Skin 0.08 protein_coding synonymous_variant LOW 342C>T Ala114Ala
M0103760 ELHKJPOM_00097 91394 3 Skin 0.08 protein_coding missense_variant MODERATE 57A>C Gln19His
M0103761 ELHKJPOM_00097 91400 19 Skin 0.53 protein_coding synonymous_variant LOW 51T>C Ser17Ser
M0103762 ELHKJPOM_00097 91431 17 Skin 0.47 protein_coding missense_variant MODERATE 20C>A Ala7Glu
M0103763 ELHKJPOM_00095 91492 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3573A>G None
M0103764 ELHKJPOM_00095 91513 12 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3594C>T None
M0103765 ELHKJPOM_00095 91523 11 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3604A>C None
M0103766 ELHKJPOM_00096 88032 4 Skin 0.11 protein_coding synonymous_variant LOW 1341T>C Val447Val
M0103767 ELHKJPOM_00096 88515 12 Skin 0.33 protein_coding synonymous_variant LOW 858G>A Glu286Glu
M0103768 ELHKJPOM_00096 89108 3 Skin 0.08 protein_coding missense_variant MODERATE 265G>A Glu89Lys
M0103769 ELHKJPOM_00097 90902 11 Skin 0.31 protein_coding synonymous_variant LOW 549T>G Ala183Ala
M0103770 ELHKJPOM_00097 91100 12 Skin 0.33 protein_coding synonymous_variant LOW 351T>C Ile117Ile
M0103771 ELHKJPOM_00095 91495 8 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -3576A>G None
M0103772 ELHKJPOM_00095 91524 8 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -3605T>G None
M0103773 ELHKJPOM_00095 91549 8 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -3630T>C None
M0103774 ELHKJPOM_00095 91681 7 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3762C>T None
M0103775 ELHKJPOM_00095 87562 8 Skin 0.22 protein_coding missense_variant MODERATE 358G>A Ala120Thr
M0103776 ELHKJPOM_00095 87815 5 Skin 0.14 protein_coding synonymous_variant LOW 105T>A Gly35Gly
M0103777 ELHKJPOM_00097 89978 7 Skin 0.19 protein_coding synonymous_variant LOW 1473T>C Ser491Ser
M0103778 ELHKJPOM_00090 79048 3 Skin 0.08 protein_coding synonymous_variant LOW 708T>C Cys236Cys
M0103779 ELHKJPOM_00090 79093 3 Skin 0.08 protein_coding synonymous_variant LOW 753T>C Arg251Arg
M0103780 ELHKJPOM_00090 79132 3 Skin 0.08 protein_coding missense_variant MODERATE 792A>G Ile264Met
M0103781 ELHKJPOM_00091 79462 3 Skin 0.08 protein_coding synonymous_variant LOW 36C>T Ser12Ser
M0103782 ELHKJPOM_00091 79650 3 Skin 0.08 protein_coding missense_variant MODERATE 224A>G Asn75Ser
M0103783 ELHKJPOM_00091 79654 3 Skin 0.08 protein_coding synonymous_variant LOW 228C>T Ile76Ile
M0103784 ELHKJPOM_00091 79663 3 Skin 0.08 protein_coding synonymous_variant LOW 237A>G Ser79Ser
M0103785 ELHKJPOM_00091 79680 3 Skin 0.08 protein_coding missense_variant MODERATE 254T>C Ile85Thr
M0103786 ELHKJPOM_00091 79681 3 Skin 0.08 protein_coding missense_variant MODERATE 255A>G Ile85Met
M0103787 ELHKJPOM_00091 79708 3 Skin 0.08 protein_coding missense_variant MODERATE 282C>G His94Gln
M0103788 ELHKJPOM_00091 79732 3 Skin 0.08 protein_coding synonymous_variant LOW 306C>T Asp102Asp
M0103789 ELHKJPOM_00091 79816 3 Skin 0.08 protein_coding synonymous_variant LOW 390C>T Asp130Asp
M0103790 ELHKJPOM_00091 79909 3 Skin 0.08 protein_coding synonymous_variant LOW 483G>T Ala161Ala
M0103791 ELHKJPOM_00091 79960 3 Skin 0.08 protein_coding synonymous_variant LOW 534G>T Ser178Ser
M0103792 ELHKJPOM_00091 79964 3 Skin 0.08 protein_coding missense_variant MODERATE 538A>G Lys180Glu
M0103793 ELHKJPOM_00091 79985 3 Skin 0.08 protein_coding missense_variant MODERATE 559G>A Asp187Asn
M0103794 ELHKJPOM_00091 80014 3 Skin 0.08 protein_coding synonymous_variant LOW 588C>A Gly196Gly
M0103795 ELHKJPOM_00091 80062 3 Skin 0.08 protein_coding synonymous_variant LOW 636G>T Thr212Thr
M0103796 ELHKJPOM_00091 80097 3 Skin 0.08 protein_coding missense_variant MODERATE 671T>C Phe224Ser
M0103797 ELHKJPOM_00091 80131 4 Skin 0.11 protein_coding synonymous_variant LOW 705C>A Leu235Leu
M0103798 ELHKJPOM_00091 80228 4 Skin 0.11 protein_coding missense_variant MODERATE 802A>G Thr268Ala
M0103799 ELHKJPOM_00091 80235 4 Skin 0.11 protein_coding missense_variant MODERATE 809G>A Ser270Asn
M0103800 ELHKJPOM_00097 89965 3 Skin 0.08 protein_coding missense_variant MODERATE 1486G>A Asp496Asn
M0103801 ELHKJPOM_00091 80441 3 Skin 0.08 protein_coding missense_variant MODERATE 1015G>A Val339Ile
M0103802 ELHKJPOM_00095 91666 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3747G>A None
M0103803 ELHKJPOM_00097 91141 3 Skin 0.08 protein_coding missense_variant MODERATE 310A>G Thr104Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
ELHKJPOM_00018 Arsenic (As), Antimony (Sb), Bismuth (Bi) 85.6 3.8e-49 1 104 1.0000 1.0000 experiment
ELHKJPOM_00019 Arsenic (As), Antimony (Sb) 97.2 7e-222 1 429 1.0000 1.0000 experiment
ELHKJPOM_00020 Arsenic (As) 97.3 1.5e-63 1 112 0.8682 0.8550 experiment
ELHKJPOM_00085 Arsenic (As), Antimony (Sb), Bismuth (Bi) 76 1.7e-41 1 104 0.9905 1.0000 experiment
ELHKJPOM_00086 Arsenic (As), Antimony (Sb) 85.1 1.1e-198 1 429 1.0000 1.0000 experiment
ELHKJPOM_00087 Arsenic (As) 81.7 8.5e-62 1 131 1.0000 1.0000 experiment
ELHKJPOM_00096 Copper (Cu), Cobalt (Co) 87.4 9.1e-231 31 476 0.9350 0.9978 experiment
ELHKJPOM_00112 Cadmium (Cd), Zinc (Zn) 89.8 3.7e-96 1 205 1.0000 1.0000 experiment
EMBMMFJG_00018 Arsenic (As), Antimony (Sb), Bismuth (Bi) 85.6 3.8e-49 1 104 1.0000 1.0000 experiment
EMBMMFJG_00019 Arsenic (As), Antimony (Sb) 97.2 7e-222 1 429 1.0000 1.0000 experiment
EMBMMFJG_00020 Arsenic (As) 97.3 1.5e-63 1 112 0.8682 0.8550 experiment
EMBMMFJG_00085 Arsenic (As), Antimony (Sb), Bismuth (Bi) 76 1.7e-41 1 104 0.9905 1.0000 experiment
EMBMMFJG_00086 Arsenic (As), Antimony (Sb) 85.1 1.1e-198 1 429 1.0000 1.0000 experiment
EMBMMFJG_00087 Arsenic (As) 81.7 8.5e-62 1 131 1.0000 1.0000 experiment
EMBMMFJG_00096 Copper (Cu), Cobalt (Co) 87.4 9.1e-231 31 476 0.9350 0.9978 experiment
EMBMMFJG_00112 Cadmium (Cd), Zinc (Zn) 89.8 3.7e-96 1 205 1.0000 1.0000 experiment
ELHKJPOM_00018 Arsenic (As) 90.4 1.4e-49 1 104 1.0000 1.0000 prediction
ELHKJPOM_00019 Arsenic (As), Antimony (Sb) 100 3.3e-225 1 429 1.0000 1.0000 prediction
ELHKJPOM_00020 Arsenic (As) 98.2 7e-62 1 112 0.8682 0.8550 prediction
ELHKJPOM_00085 Arsenic (As) 76.9 4.7e-40 1 104 0.9905 1.0000 prediction
ELHKJPOM_00086 Arsenic (As), Antimony (Sb) 86 1.6e-198 1 429 1.0000 1.0000 prediction
ELHKJPOM_00087 Arsenic (As) 80.9 7.9e-61 1 131 1.0000 0.9924 prediction
ELHKJPOM_00096 Copper (Cu), Cobalt (Co) 100 1.3e-275 1 477 1.0000 1.0000 prediction
ELHKJPOM_00097 Copper (Cu) 98.1 0 1 687 1.0000 1.0000 prediction
ELHKJPOM_00112 Cadmium (Cd), Zinc (Zn) 98.5 1.6e-100 1 205 1.0000 1.0000 prediction
EMBMMFJG_00018 Arsenic (As) 90.4 1.4e-49 1 104 1.0000 1.0000 prediction
EMBMMFJG_00019 Arsenic (As), Antimony (Sb) 100 3.3e-225 1 429 1.0000 1.0000 prediction
EMBMMFJG_00020 Arsenic (As) 98.2 7e-62 1 112 0.8682 0.8550 prediction
EMBMMFJG_00085 Arsenic (As) 76.9 4.7e-40 1 104 0.9905 1.0000 prediction
EMBMMFJG_00086 Arsenic (As), Antimony (Sb) 86 1.6e-198 1 429 1.0000 1.0000 prediction
EMBMMFJG_00087 Arsenic (As) 80.9 7.9e-61 1 131 1.0000 0.9924 prediction
EMBMMFJG_00096 Copper (Cu), Cobalt (Co) 100 1.3e-275 1 477 1.0000 1.0000 prediction
EMBMMFJG_00097 Copper (Cu) 98.1 0 1 687 1.0000 1.0000 prediction
EMBMMFJG_00112 Cadmium (Cd), Zinc (Zn) 98.5 1.6e-100 1 205 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
ELHKJPOM_00005 PHI:11807 ohyA 74.8 9e-272 1 591 1.0000 1.0000 rodents skin infection; food poisoning; respiratory disease oleate hydratase reduced virulence
ELHKJPOM_00006 PHI:6191 Lqo 82.5 3.4e-248 1 497 0.9960 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence
ELHKJPOM_00008 PHI:6191 Lqo 85.6 1.7e-39 4 93 0.9474 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence
EMBMMFJG_00005 PHI:11807 ohyA 74.8 9e-272 1 591 1.0000 1.0000 rodents skin infection; food poisoning; respiratory disease oleate hydratase reduced virulence
EMBMMFJG_00006 PHI:6191 Lqo 82.5 3.4e-248 1 497 0.9960 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence
EMBMMFJG_00008 PHI:6191 Lqo 85.6 1.7e-39 4 93 0.9474 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ELHKJPOM_00031 QDW85679.1|GH13_31 100 0 1 552 1 1
ELHKJPOM_00104 QKQ09233.1|GT2 98.9 8.42e-258 1 367 1 1
EMBMMFJG_00031 QDW85679.1|GH13_31 100 0 1 552 1 1
EMBMMFJG_00104 QKQ09233.1|GT2 98.9 8.42e-258 1 367 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ELHKJPOM_00009 2.A.118.1.7 73.3 1.3e-210 16 521 0.9712 0.9807 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.118 The Basic Amino Acid Antiporter (ArcD) Family
ELHKJPOM_00019 2.A.45.1.1 95.1 6.7e-216 1 429 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.45 The Arsenite-Antimonite (ArsB) Efflux Family
ELHKJPOM_00086 2.A.45.1.1 84.6 2e-196 1 429 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.45 The Arsenite-Antimonite (ArsB) Efflux Family
ELHKJPOM_00093 2.A.21.2.2 73 3.8e-218 1 512 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ELHKJPOM_00112 2.A.77.1.1 89.3 3.1e-94 1 205 1.0000 0.9809 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.77 The Cadmium Resistance (CadD) Family
EMBMMFJG_00009 2.A.118.1.7 73.3 1.3e-210 16 521 0.9712 0.9807 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.118 The Basic Amino Acid Antiporter (ArcD) Family
EMBMMFJG_00019 2.A.45.1.1 95.1 6.7e-216 1 429 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.45 The Arsenite-Antimonite (ArsB) Efflux Family
EMBMMFJG_00086 2.A.45.1.1 84.6 2e-196 1 429 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.45 The Arsenite-Antimonite (ArsB) Efflux Family
EMBMMFJG_00093 2.A.21.2.2 73 3.8e-218 1 512 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
EMBMMFJG_00112 2.A.77.1.1 89.3 3.1e-94 1 205 1.0000 0.9809 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.77 The Cadmium Resistance (CadD) Family