Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C828
  Reference Plasmid   NZ_CP068231.1
  Reference Plasmid Size   244072
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0103804 NNHKCOBJ_00042 38066 3 Skin 0.04 protein_coding missense_variant MODERATE 1463G>C Gly488Ala
M0103805 NNHKCOBJ_00042 38472 4 Skin 0.06 protein_coding missense_variant MODERATE 1057T>C Tyr353His
M0103806 NNHKCOBJ_00035 27886 3 Skin 0.04 protein_coding synonymous_variant LOW 378T>C Val126Val
M0103807 NNHKCOBJ_00036 28200 7 Skin 0.10 protein_coding synonymous_variant LOW 111C>T His37His
M0103808 NNHKCOBJ_00036 28215 7 Skin 0.10 protein_coding synonymous_variant LOW 126C>G Leu42Leu
M0103809 NNHKCOBJ_00036 28336 7 Skin 0.10 protein_coding missense_variant MODERATE 247A>G Thr83Ala
M0103810 NNHKCOBJ_00036 28347 7 Skin 0.10 protein_coding synonymous_variant LOW 258C>T Leu86Leu
M0103811 NNHKCOBJ_00036 28782 7 Skin 0.10 protein_coding synonymous_variant LOW 693A>G Glu231Glu
M0103812 NNHKCOBJ_00037 29926 6 Skin 0.09 protein_coding synonymous_variant LOW 444A>G Gly148Gly
M0103813 NNHKCOBJ_00038 30760 4 Skin 0.06 protein_coding synonymous_variant LOW 429G>C Leu143Leu
M0103814 NNHKCOBJ_00038 31177 4 Skin 0.06 protein_coding synonymous_variant LOW 846T>G Ala282Ala
M0103815 NNHKCOBJ_00038 31192 4 Skin 0.06 protein_coding synonymous_variant LOW 861C>T Val287Val
M0103816 NNHKCOBJ_00038 31246 4 Skin 0.06 protein_coding synonymous_variant LOW 915A>C Thr305Thr
M0103817 NNHKCOBJ_00039 31649 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -42T>C None
M0103818 NNHKCOBJ_00039 31759 3 Skin 0.04 protein_coding synonymous_variant LOW 69C>T Asp23Asp
M0103819 NNHKCOBJ_00039 31879 4 Skin 0.06 protein_coding synonymous_variant LOW 189A>G Leu63Leu
M0103820 NNHKCOBJ_00039 31981 3 Skin 0.04 protein_coding synonymous_variant LOW 291C>T Ala97Ala
M0103821 NNHKCOBJ_00042 43111 14 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3583G>A None
M0103822 NNHKCOBJ_00047 43186 16 Skin 0.24 protein_coding synonymous_variant LOW 288A>G Leu96Leu
M0103823 NNHKCOBJ_00047 43228 16 Skin 0.24 protein_coding synonymous_variant LOW 246A>G Arg82Arg
M0103824 NNHKCOBJ_00047 43336 16 Skin 0.24 protein_coding synonymous_variant LOW 138T>C Ser46Ser
M0103825 NNHKCOBJ_00047 43395 16 Skin 0.24 protein_coding missense_variant MODERATE 79A>G Met27Val
M0103826 NNHKCOBJ_00048 44325 15 Skin 0.22 protein_coding synonymous_variant LOW 540G>A Ala180Ala
M0103827 NNHKCOBJ_00048 44481 3 Skin 0.04 protein_coding synonymous_variant LOW 384T>G Arg128Arg
M0103828 NNHKCOBJ_00048 44754 16 Skin 0.24 protein_coding synonymous_variant LOW 111G>A Leu37Leu
M0103829 NNHKCOBJ_00048 44801 15 Skin 0.22 protein_coding missense_variant MODERATE 64C>A Leu22Ile
M0103830 NNHKCOBJ_00048 44815 15 Skin 0.22 protein_coding missense_variant MODERATE 50G>T Arg17Met
M0103831 NNHKCOBJ_00046 44869 17 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1768C>T None
M0103832 NNHKCOBJ_00049 44973 17 Skin 0.25 protein_coding synonymous_variant LOW 849T>C Thr283Thr
M0103833 NNHKCOBJ_00049 45074 18 Skin 0.27 protein_coding missense_variant MODERATE 748A>G Ser250Gly
M0103834 NNHKCOBJ_00049 45099 15 Skin 0.22 protein_coding synonymous_variant LOW 723T>C Asn241Asn
M0103835 NNHKCOBJ_00049 45135 15 Skin 0.22 protein_coding synonymous_variant LOW 687C>G Arg229Arg
M0103836 NNHKCOBJ_00049 45141 15 Skin 0.22 protein_coding synonymous_variant LOW 681G>T Thr227Thr
M0103837 NNHKCOBJ_00049 45149 15 Skin 0.22 protein_coding missense_variant MODERATE 673G>A Val225Ile
M0103838 NNHKCOBJ_00049 45153 15 Skin 0.22 protein_coding synonymous_variant LOW 669C>A Gly223Gly
M0103839 NNHKCOBJ_00049 45177 15 Skin 0.22 protein_coding synonymous_variant LOW 645A>G Gly215Gly
M0103840 NNHKCOBJ_00049 45241 15 Skin 0.22 protein_coding missense_variant MODERATE 581A>G Asn194Ser
M0103841 NNHKCOBJ_00049 45444 16 Skin 0.24 protein_coding missense_variant MODERATE 378C>G Asp126Glu
M0103842 NNHKCOBJ_00049 45600 3 Skin 0.04 protein_coding synonymous_variant LOW 222C>T Ile74Ile
M0103843 NNHKCOBJ_00049 45750 19 Skin 0.28 protein_coding synonymous_variant LOW 72A>G Thr24Thr
M0103844 NNHKCOBJ_00049 45767 17 Skin 0.25 protein_coding missense_variant MODERATE 55C>A Leu19Met
M0103845 NNHKCOBJ_00049 45783 17 Skin 0.25 protein_coding synonymous_variant LOW 39T>C Ala13Ala
M0103846 NNHKCOBJ_00049 45801 17 Skin 0.25 protein_coding synonymous_variant LOW 21T>G Leu7Leu
M0103847 NNHKCOBJ_00049 45813 17 Skin 0.25 protein_coding synonymous_variant LOW 9G>A Arg3Arg
M0103848 NNHKCOBJ_00049 45815 19 Skin 0.28 protein_coding synonymous_variant LOW 7A>C Arg3Arg
M0103849 NNHKCOBJ_00050 46091 16 Skin 0.24 protein_coding synonymous_variant LOW 174G>A Leu58Leu
M0103850 NNHKCOBJ_00050 46095 16 Skin 0.24 protein_coding missense_variant MODERATE 170A>T Glu57Val
M0103851 NNHKCOBJ_00153 148767 4 Skin 0.06 protein_coding missense_variant MODERATE 818C>A Ala273Glu
M0103852 NNHKCOBJ_00048 44601 13 Skin 0.19 protein_coding synonymous_variant LOW 264C>T Ile88Ile
M0103853 NNHKCOBJ_00049 45549 16 Skin 0.24 protein_coding synonymous_variant LOW 273C>T Val91Val
M0103854 NNHKCOBJ_00049 45639 16 Skin 0.24 protein_coding synonymous_variant LOW 183C>A Gly61Gly
M0103855 NNHKCOBJ_00042 37714 3 Skin 0.04 protein_coding synonymous_variant LOW 1815T>C Asn605Asn
M0103856 NNHKCOBJ_00042 37717 3 Skin 0.04 protein_coding synonymous_variant LOW 1812C>T Asn604Asn
M0103857 NNHKCOBJ_00042 38088 3 Skin 0.04 protein_coding missense_variant MODERATE 1441T>C Ser481Pro
M0103858 NNHKCOBJ_00021 14407 6 Skin 0.09 protein_coding synonymous_variant LOW 516A>C Arg172Arg
M0103859 NNHKCOBJ_00021 14482 6 Skin 0.09 protein_coding synonymous_variant LOW 441G>C Val147Val
M0103860 NNHKCOBJ_00021 14515 6 Skin 0.09 protein_coding synonymous_variant LOW 408C>T His136His
M0103861 NNHKCOBJ_00021 14530 6 Skin 0.09 protein_coding synonymous_variant LOW 393G>A Gln131Gln
M0103862 NNHKCOBJ_00021 14545 6 Skin 0.09 protein_coding synonymous_variant LOW 378T>C Phe126Phe
M0103863 NNHKCOBJ_00021 14546 6 Skin 0.09 protein_coding missense_variant MODERATE 377T>C Phe126Ser
M0103864 NNHKCOBJ_00021 14548 6 Skin 0.09 protein_coding synonymous_variant LOW 375C>T Ser125Ser
M0103865 NNHKCOBJ_00021 14563 6 Skin 0.09 protein_coding synonymous_variant LOW 360G>C Leu120Leu
M0103866 NNHKCOBJ_00021 14575 6 Skin 0.09 protein_coding synonymous_variant LOW 348T>A Ala116Ala
M0103867 NNHKCOBJ_00021 14582 6 Skin 0.09 protein_coding missense_variant MODERATE 341T>C Val114Ala
M0103868 NNHKCOBJ_00021 14583 6 Skin 0.09 protein_coding missense_variant MODERATE 340G>A Val114Met
M0103869 NNHKCOBJ_00021 14629 6 Skin 0.09 protein_coding synonymous_variant LOW 294G>A Lys98Lys
M0103870 NNHKCOBJ_00021 14643 6 Skin 0.09 protein_coding missense_variant MODERATE 280G>C Val94Leu
M0103871 NNHKCOBJ_00021 14664 5 Skin 0.07 protein_coding missense_variant MODERATE 259G>A Val87Met
M0103872 NNHKCOBJ_00021 14671 5 Skin 0.07 protein_coding synonymous_variant LOW 252T>C Ala84Ala
M0103873 NNHKCOBJ_00021 14676 5 Skin 0.07 protein_coding missense_variant MODERATE 247G>A Val83Met
M0103874 NNHKCOBJ_00021 14683 5 Skin 0.07 protein_coding synonymous_variant LOW 240G>C Val80Val
M0103875 NNHKCOBJ_00021 14695 6 Skin 0.09 protein_coding synonymous_variant LOW 228A>G Gln76Gln
M0103876 NNHKCOBJ_00021 14721 7 Skin 0.10 protein_coding missense_variant MODERATE 202G>A Ala68Thr
M0103877 NNHKCOBJ_00021 14733 7 Skin 0.10 protein_coding missense_variant MODERATE 190A>T Thr64Ser
M0103878 NNHKCOBJ_00021 14746 7 Skin 0.10 protein_coding synonymous_variant LOW 177C>T Tyr59Tyr
M0103879 NNHKCOBJ_00021 14772 7 Skin 0.10 protein_coding missense_variant MODERATE 151T>A Leu51Met
M0103880 NNHKCOBJ_00021 14776 7 Skin 0.10 protein_coding synonymous_variant LOW 147T>C Asp49Asp
M0103881 NNHKCOBJ_00021 14779 7 Skin 0.10 protein_coding synonymous_variant LOW 144T>C Asp48Asp
M0103882 NNHKCOBJ_00021 14783 7 Skin 0.10 protein_coding missense_variant MODERATE 140C>G Ala47Gly
M0103883 NNHKCOBJ_00021 14802 7 Skin 0.10 protein_coding missense_variant MODERATE 121A>G Thr41Ala
M0103884 NNHKCOBJ_00021 14815 7 Skin 0.10 protein_coding synonymous_variant LOW 108A>G Pro36Pro
M0103885 NNHKCOBJ_00021 14818 7 Skin 0.10 protein_coding synonymous_variant LOW 105A>G Glu35Glu
M0103886 NNHKCOBJ_00021 14827 7 Skin 0.10 protein_coding synonymous_variant LOW 96C>A Arg32Arg
M0103887 NNHKCOBJ_00021 14872 7 Skin 0.10 protein_coding synonymous_variant LOW 51C>T Pro17Pro
M0103888 NNHKCOBJ_00021 14875 7 Skin 0.10 protein_coding synonymous_variant LOW 48G>A Ala16Ala
M0103889 NNHKCOBJ_00020 14967 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -817A>G None
M0103890 NNHKCOBJ_00020 14998 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -848G>A None
M0103891 NNHKCOBJ_00020 15149 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -999T>C None
M0103892 NNHKCOBJ_00020 15269 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1119A>G None
M0103893 NNHKCOBJ_00020 15342 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1192T>C None
M0103894 NNHKCOBJ_00020 15355 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1205G>A None
M0103895 NNHKCOBJ_00022 15379 7 Skin 0.10 protein_coding synonymous_variant LOW 870T>A Leu290Leu
M0103896 NNHKCOBJ_00022 15420 7 Skin 0.10 protein_coding missense_variant MODERATE 829G>A Gly277Ser
M0103897 NNHKCOBJ_00022 15427 7 Skin 0.10 protein_coding synonymous_variant LOW 822G>C Pro274Pro
M0103898 NNHKCOBJ_00022 15445 7 Skin 0.10 protein_coding synonymous_variant LOW 804C>G Thr268Thr
M0103899 NNHKCOBJ_00022 15556 7 Skin 0.10 protein_coding synonymous_variant LOW 693G>C Thr231Thr
M0103900 NNHKCOBJ_00022 15571 7 Skin 0.10 protein_coding synonymous_variant LOW 678G>C Leu226Leu
M0103901 NNHKCOBJ_00022 15580 7 Skin 0.10 protein_coding synonymous_variant LOW 669G>A Val223Val
M0103902 NNHKCOBJ_00022 15691 7 Skin 0.10 protein_coding synonymous_variant LOW 558T>C Leu186Leu
M0103903 NNHKCOBJ_00022 15733 7 Skin 0.10 protein_coding synonymous_variant LOW 516T>A Arg172Arg
M0103904 NNHKCOBJ_00022 15745 7 Skin 0.10 protein_coding synonymous_variant LOW 504G>T Ala168Ala
M0103905 NNHKCOBJ_00022 15764 7 Skin 0.10 protein_coding missense_variant MODERATE 485A>G His162Arg
M0103906 NNHKCOBJ_00022 15774 7 Skin 0.10 protein_coding missense_variant MODERATE 475C>G Pro159Ala
M0103907 NNHKCOBJ_00022 15803 7 Skin 0.10 protein_coding missense_variant MODERATE 446G>C Gly149Ala
M0103908 NNHKCOBJ_00022 15871 7 Skin 0.10 protein_coding synonymous_variant LOW 378A>G Glu126Glu
M0103909 NNHKCOBJ_00022 15910 7 Skin 0.10 protein_coding synonymous_variant LOW 339C>T Cys113Cys
M0103910 NNHKCOBJ_00022 15949 7 Skin 0.10 protein_coding synonymous_variant LOW 300G>A Gly100Gly
M0103911 NNHKCOBJ_00022 15961 7 Skin 0.10 protein_coding synonymous_variant LOW 288T>A Ala96Ala
M0103912 NNHKCOBJ_00022 15964 7 Skin 0.10 protein_coding synonymous_variant LOW 285C>T Ile95Ile
M0103913 NNHKCOBJ_00022 15990 7 Skin 0.10 protein_coding missense_variant MODERATE 259T>G Ser87Ala
M0103914 NNHKCOBJ_00022 16006 7 Skin 0.10 protein_coding synonymous_variant LOW 243T>C Asn81Asn
M0103915 NNHKCOBJ_00022 16030 7 Skin 0.10 protein_coding synonymous_variant LOW 219A>T Thr73Thr
M0103916 NNHKCOBJ_00022 16045 7 Skin 0.10 protein_coding synonymous_variant LOW 204T>A Val68Val
M0103917 NNHKCOBJ_00022 16066 7 Skin 0.10 protein_coding synonymous_variant LOW 183C>T Gly61Gly
M0103918 NNHKCOBJ_00022 16078 7 Skin 0.10 protein_coding synonymous_variant LOW 171A>G Leu57Leu
M0103919 NNHKCOBJ_00022 16093 7 Skin 0.10 protein_coding synonymous_variant LOW 156A>G Arg52Arg
M0103920 NNHKCOBJ_00022 16099 7 Skin 0.10 protein_coding synonymous_variant LOW 150A>C Arg50Arg
M0103921 NNHKCOBJ_00020 16336 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2186T>C None
M0103922 NNHKCOBJ_00020 16339 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2189T>A None
M0103923 NNHKCOBJ_00023 16657 6 Skin 0.09 protein_coding synonymous_variant LOW 96G>C Gly32Gly
M0103924 NNHKCOBJ_00023 16662 6 Skin 0.09 protein_coding missense_variant MODERATE 91T>C Ser31Pro
M0103925 NNHKCOBJ_00023 16666 6 Skin 0.09 protein_coding synonymous_variant LOW 87A>G Pro29Pro
M0103926 NNHKCOBJ_00023 16667 6 Skin 0.09 protein_coding missense_variant MODERATE 86C>A Pro29Gln
M0103927 NNHKCOBJ_00023 16672 6 Skin 0.09 protein_coding synonymous_variant LOW 81C>T Val27Val
M0103928 NNHKCOBJ_00023 16673 6 Skin 0.09 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0103929 NNHKCOBJ_00023 16736 6 Skin 0.09 protein_coding missense_variant MODERATE 17T>G Ile6Ser
M0103930 NNHKCOBJ_00024 16796 6 Skin 0.09 protein_coding synonymous_variant LOW 1152A>G Lys384Lys
M0103931 NNHKCOBJ_00024 17192 6 Skin 0.09 protein_coding synonymous_variant LOW 756A>G Glu252Glu
M0103932 NNHKCOBJ_00024 17363 6 Skin 0.09 protein_coding synonymous_variant LOW 585A>G Glu195Glu
M0103933 NNHKCOBJ_00024 17384 6 Skin 0.09 protein_coding synonymous_variant LOW 564G>A Ala188Ala
M0103934 NNHKCOBJ_00024 17431 6 Skin 0.09 protein_coding synonymous_variant LOW 517T>C Leu173Leu
M0103935 NNHKCOBJ_00024 17453 6 Skin 0.09 protein_coding synonymous_variant LOW 495C>T Asp165Asp
M0103936 NNHKCOBJ_00024 17639 5 Skin 0.07 protein_coding synonymous_variant LOW 309C>T Cys103Cys
M0103937 NNHKCOBJ_00020 18002 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3852T>C None
M0103938 NNHKCOBJ_00020 18004 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3854A>G None
M0103939 NNHKCOBJ_00020 18130 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3980T>G None
M0103940 NNHKCOBJ_00020 18133 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3983C>T None
M0103941 NNHKCOBJ_00020 18149 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3999T>G None
M0103942 NNHKCOBJ_00020 18249 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4099C>T None
M0103943 NNHKCOBJ_00020 18259 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4109C>G None
M0103944 NNHKCOBJ_00025 18266 6 Skin 0.09 protein_coding start_lost HIGH 2T>C Met1?
M0103945 NNHKCOBJ_00025 18289 6 Skin 0.09 protein_coding stop_gained HIGH 25G>T Glu9*
M0103946 NNHKCOBJ_00025 18306 6 Skin 0.09 protein_coding synonymous_variant LOW 42A>G Leu14Leu
M0103947 NNHKCOBJ_00025 18311 6 Skin 0.09 protein_coding missense_variant MODERATE 47C>A Ala16Asp
M0103948 NNHKCOBJ_00026 18486 6 Skin 0.09 protein_coding synonymous_variant LOW 744T>G Thr248Thr
M0103949 NNHKCOBJ_00026 18492 6 Skin 0.09 protein_coding synonymous_variant LOW 738C>T Ala246Ala
M0103950 NNHKCOBJ_00026 18729 6 Skin 0.09 protein_coding synonymous_variant LOW 501G>A Ala167Ala
M0103951 NNHKCOBJ_00026 18742 6 Skin 0.09 protein_coding missense_variant MODERATE 488T>C Met163Thr
M0103952 NNHKCOBJ_00026 18977 6 Skin 0.09 protein_coding missense_variant MODERATE 253A>G Ser85Gly
M0103953 NNHKCOBJ_00026 19008 5 Skin 0.07 protein_coding synonymous_variant LOW 222A>G Thr74Thr
M0103954 NNHKCOBJ_00021 19422 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4500A>G None
M0103955 NNHKCOBJ_00021 19438 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4516C>T None
M0103956 NNHKCOBJ_00021 19442 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4520C>T None
M0103957 NNHKCOBJ_00021 19467 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4545G>A None
M0103958 NNHKCOBJ_00021 19558 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4636A>G None
M0103959 NNHKCOBJ_00021 19668 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4746T>C None
M0103960 NNHKCOBJ_00021 19715 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4793T>C None
M0103961 NNHKCOBJ_00021 19777 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4855C>T None
M0103962 NNHKCOBJ_00021 19833 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4911T>C None
M0103963 NNHKCOBJ_00027 19962 4 Skin 0.06 protein_coding synonymous_variant LOW 123A>C Gly41Gly
M0103964 NNHKCOBJ_00027 20007 4 Skin 0.06 protein_coding synonymous_variant LOW 168T>C Cys56Cys
M0103965 NNHKCOBJ_00027 20103 4 Skin 0.06 protein_coding missense_variant MODERATE 264T>G Ser88Arg
M0103966 NNHKCOBJ_00022 20401 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4153T>C None
M0103967 NNHKCOBJ_00022 20526 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4278T>C None
M0103968 NNHKCOBJ_00022 20595 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4347C>T None
M0103969 NNHKCOBJ_00028 20660 4 Skin 0.06 protein_coding missense_variant MODERATE 14T>C Met5Thr
M0103970 NNHKCOBJ_00028 20664 4 Skin 0.06 protein_coding synonymous_variant LOW 18T>C Phe6Phe
M0103971 NNHKCOBJ_00028 20678 4 Skin 0.06 protein_coding missense_variant MODERATE 32A>G Asn11Ser
M0103972 NNHKCOBJ_00028 20721 4 Skin 0.06 protein_coding synonymous_variant LOW 75G>A Leu25Leu
M0103973 NNHKCOBJ_00028 20748 4 Skin 0.06 protein_coding synonymous_variant LOW 102G>A Thr34Thr
M0103974 NNHKCOBJ_00028 20790 4 Skin 0.06 protein_coding synonymous_variant LOW 144C>T Phe48Phe
M0103975 NNHKCOBJ_00028 20793 4 Skin 0.06 protein_coding synonymous_variant LOW 147C>G Thr49Thr
M0103976 NNHKCOBJ_00028 20799 4 Skin 0.06 protein_coding synonymous_variant LOW 153C>G Ala51Ala
M0103977 NNHKCOBJ_00028 20826 4 Skin 0.06 protein_coding synonymous_variant LOW 180T>C Pro60Pro
M0103978 NNHKCOBJ_00028 20829 4 Skin 0.06 protein_coding synonymous_variant LOW 183G>A Thr61Thr
M0103979 NNHKCOBJ_00028 20895 3 Skin 0.04 protein_coding synonymous_variant LOW 249T>C Pro83Pro
M0103980 NNHKCOBJ_00028 20901 3 Skin 0.04 protein_coding synonymous_variant LOW 255C>T Asn85Asn
M0103981 NNHKCOBJ_00028 20904 3 Skin 0.04 protein_coding synonymous_variant LOW 258G>T Ala86Ala
M0103982 NNHKCOBJ_00028 20946 4 Skin 0.06 protein_coding synonymous_variant LOW 300A>G Glu100Glu
M0103983 NNHKCOBJ_00028 20997 4 Skin 0.06 protein_coding synonymous_variant LOW 351T>C Asn117Asn
M0103984 NNHKCOBJ_00028 21015 4 Skin 0.06 protein_coding synonymous_variant LOW 369G>A Leu123Leu
M0103985 NNHKCOBJ_00028 21048 4 Skin 0.06 protein_coding synonymous_variant LOW 402T>C Arg134Arg
M0103986 NNHKCOBJ_00028 21051 4 Skin 0.06 protein_coding synonymous_variant LOW 405T>C Arg135Arg
M0103987 NNHKCOBJ_00028 21054 4 Skin 0.06 protein_coding synonymous_variant LOW 408C>T Asp136Asp
M0103988 NNHKCOBJ_00033 26066 3 Skin 0.04 protein_coding synonymous_variant LOW 46C>A Arg16Arg
M0103989 NNHKCOBJ_00033 26125 3 Skin 0.04 protein_coding synonymous_variant LOW 105C>T Cys35Cys
M0103990 NNHKCOBJ_00033 26212 3 Skin 0.04 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0103991 NNHKCOBJ_00033 26293 4 Skin 0.06 protein_coding synonymous_variant LOW 273A>G Arg91Arg
M0103992 NNHKCOBJ_00034 26382 4 Skin 0.06 protein_coding synonymous_variant LOW 27C>T Phe9Phe
M0103993 NNHKCOBJ_00034 26400 4 Skin 0.06 protein_coding synonymous_variant LOW 45G>A Leu15Leu
M0103994 NNHKCOBJ_00034 26463 4 Skin 0.06 protein_coding synonymous_variant LOW 108T>C Asn36Asn
M0103995 NNHKCOBJ_00034 26475 4 Skin 0.06 protein_coding synonymous_variant LOW 120C>T Cys40Cys
M0103996 NNHKCOBJ_00034 26613 4 Skin 0.06 protein_coding synonymous_variant LOW 258G>C Pro86Pro
M0103997 NNHKCOBJ_00034 26619 4 Skin 0.06 protein_coding synonymous_variant LOW 264C>T Tyr88Tyr
M0103998 NNHKCOBJ_00034 26628 4 Skin 0.06 protein_coding synonymous_variant LOW 273A>G Glu91Glu
M0103999 NNHKCOBJ_00034 26685 5 Skin 0.07 protein_coding synonymous_variant LOW 330C>T Arg110Arg
M0104000 NNHKCOBJ_00034 26697 5 Skin 0.07 protein_coding synonymous_variant LOW 342C>T Gly114Gly
M0104001 NNHKCOBJ_00034 26835 5 Skin 0.07 protein_coding synonymous_variant LOW 480C>T Asn160Asn
M0104002 NNHKCOBJ_00034 27114 5 Skin 0.07 protein_coding synonymous_variant LOW 759T>C Thr253Thr
M0104003 NNHKCOBJ_00034 27157 5 Skin 0.07 protein_coding missense_variant MODERATE 802A>G Asn268Asp
M0104004 NNHKCOBJ_00034 27222 4 Skin 0.06 protein_coding synonymous_variant LOW 867C>G Val289Val
M0104005 NNHKCOBJ_00034 27225 4 Skin 0.06 protein_coding synonymous_variant LOW 870C>T Ala290Ala
M0104006 NNHKCOBJ_00034 27228 4 Skin 0.06 protein_coding synonymous_variant LOW 873G>T Gly291Gly
M0104007 NNHKCOBJ_00034 27231 4 Skin 0.06 protein_coding synonymous_variant LOW 876C>T Ala292Ala
M0104008 NNHKCOBJ_00034 27243 4 Skin 0.06 protein_coding synonymous_variant LOW 888C>T Ile296Ile
M0104009 NNHKCOBJ_00034 27252 4 Skin 0.06 protein_coding synonymous_variant LOW 897T>C Arg299Arg
M0104010 NNHKCOBJ_00034 27273 5 Skin 0.07 protein_coding synonymous_variant LOW 918C>T Gly306Gly
M0104011 NNHKCOBJ_00034 27276 5 Skin 0.07 protein_coding synonymous_variant LOW 921G>C Arg307Arg
M0104012 NNHKCOBJ_00034 27288 5 Skin 0.07 protein_coding synonymous_variant LOW 933G>T Gly311Gly
M0104013 NNHKCOBJ_00034 27300 5 Skin 0.07 protein_coding synonymous_variant LOW 945C>T Gly315Gly
M0104014 NNHKCOBJ_00034 27312 5 Skin 0.07 protein_coding synonymous_variant LOW 957G>C Gly319Gly
M0104015 NNHKCOBJ_00034 27318 5 Skin 0.07 protein_coding synonymous_variant LOW 963C>T Thr321Thr
M0104016 NNHKCOBJ_00034 27321 5 Skin 0.07 protein_coding synonymous_variant LOW 966A>G Gln322Gln
M0104017 NNHKCOBJ_00034 27324 5 Skin 0.07 protein_coding synonymous_variant LOW 969C>T Leu323Leu
M0104018 NNHKCOBJ_00034 27327 5 Skin 0.07 protein_coding synonymous_variant LOW 972G>C Pro324Pro
M0104019 NNHKCOBJ_00034 27351 6 Skin 0.09 protein_coding synonymous_variant LOW 996G>A Lys332Lys
M0104020 NNHKCOBJ_00034 27381 6 Skin 0.09 protein_coding synonymous_variant LOW 1026T>C Thr342Thr
M0104021 NNHKCOBJ_00034 27393 6 Skin 0.09 protein_coding synonymous_variant LOW 1038T>C Gly346Gly
M0104022 NNHKCOBJ_00034 27402 6 Skin 0.09 protein_coding missense_variant MODERATE 1047G>C Glu349Asp
M0104023 NNHKCOBJ_00034 27409 6 Skin 0.09 protein_coding missense_variant MODERATE 1054C>A His352Asn
M0104024 NNHKCOBJ_00034 27411 6 Skin 0.09 protein_coding missense_variant MODERATE 1056C>G His352Gln
M0104025 NNHKCOBJ_00029 27470 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3791A>G None
M0104026 NNHKCOBJ_00035 27538 6 Skin 0.09 protein_coding synonymous_variant LOW 30C>T Gly10Gly
M0104027 NNHKCOBJ_00035 27557 6 Skin 0.09 protein_coding missense_variant MODERATE 49A>G Ile17Val
M0104028 NNHKCOBJ_00035 27572 6 Skin 0.09 protein_coding missense_variant MODERATE 64G>C Val22Leu
M0104029 NNHKCOBJ_00035 27584 6 Skin 0.09 protein_coding missense_variant MODERATE 76G>A Ala26Thr
M0104030 NNHKCOBJ_00035 27691 4 Skin 0.06 protein_coding synonymous_variant LOW 183C>T Ala61Ala
M0104031 NNHKCOBJ_00035 27719 4 Skin 0.06 protein_coding missense_variant MODERATE 211A>G Ser71Gly
M0104032 NNHKCOBJ_00035 27769 5 Skin 0.07 protein_coding synonymous_variant LOW 261T>C Asp87Asp
M0104033 NNHKCOBJ_00035 27820 4 Skin 0.06 protein_coding synonymous_variant LOW 312T>C Pro104Pro
M0104034 NNHKCOBJ_00035 27890 4 Skin 0.06 protein_coding missense_variant MODERATE 382T>G Ser128Ala
M0104035 NNHKCOBJ_00029 27912 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4233A>G None
M0104036 NNHKCOBJ_00029 27936 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4257C>T None
M0104037 NNHKCOBJ_00029 27970 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4291T>C None
M0104038 NNHKCOBJ_00029 28073 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4394C>A None
M0104039 NNHKCOBJ_00029 28074 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4395T>C None
M0104040 NNHKCOBJ_00036 28093 5 Skin 0.07 protein_coding missense_variant MODERATE 4A>C Lys2Gln
M0104041 NNHKCOBJ_00036 28132 5 Skin 0.07 protein_coding missense_variant MODERATE 43A>G Thr15Ala
M0104042 NNHKCOBJ_00036 28168 6 Skin 0.09 protein_coding missense_variant MODERATE 79A>G Thr27Ala
M0104043 NNHKCOBJ_00036 28182 6 Skin 0.09 protein_coding synonymous_variant LOW 93C>G Ala31Ala
M0104044 NNHKCOBJ_00036 28234 5 Skin 0.07 protein_coding missense_variant MODERATE 145G>A Gly49Ser
M0104045 NNHKCOBJ_00036 28257 5 Skin 0.07 protein_coding missense_variant MODERATE 168G>T Met56Ile
M0104046 NNHKCOBJ_00036 28269 6 Skin 0.09 protein_coding synonymous_variant LOW 180C>T Asp60Asp
M0104047 NNHKCOBJ_00036 28296 6 Skin 0.09 protein_coding synonymous_variant LOW 207C>T Ser69Ser
M0104048 NNHKCOBJ_00036 28413 5 Skin 0.07 protein_coding synonymous_variant LOW 324C>A Leu108Leu
M0104049 NNHKCOBJ_00036 28656 6 Skin 0.09 protein_coding missense_variant MODERATE 567C>G Ile189Met
M0104050 NNHKCOBJ_00036 28753 6 Skin 0.09 protein_coding synonymous_variant LOW 664C>T Leu222Leu
M0104051 NNHKCOBJ_00036 28764 6 Skin 0.09 protein_coding synonymous_variant LOW 675A>G Thr225Thr
M0104052 NNHKCOBJ_00036 28767 6 Skin 0.09 protein_coding synonymous_variant LOW 678A>G Arg226Arg
M0104053 NNHKCOBJ_00036 28788 6 Skin 0.09 protein_coding synonymous_variant LOW 699A>G Arg233Arg
M0104054 NNHKCOBJ_00036 28883 6 Skin 0.09 protein_coding missense_variant MODERATE 794G>C Gly265Ala
M0104055 NNHKCOBJ_00036 28992 6 Skin 0.09 protein_coding synonymous_variant LOW 903G>A Glu301Glu
M0104056 NNHKCOBJ_00036 29009 6 Skin 0.09 protein_coding missense_variant MODERATE 920G>T Cys307Phe
M0104057 NNHKCOBJ_00036 29280 6 Skin 0.09 protein_coding synonymous_variant LOW 1191G>A Leu397Leu
M0104058 NNHKCOBJ_00036 29394 6 Skin 0.09 protein_coding synonymous_variant LOW 1305C>T Gly435Gly
M0104059 NNHKCOBJ_00037 29425 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -58C>A None
M0104060 NNHKCOBJ_00037 29441 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -42C>T None
M0104061 NNHKCOBJ_00037 29569 6 Skin 0.09 protein_coding synonymous_variant LOW 87A>G Lys29Lys
M0104062 NNHKCOBJ_00037 29603 6 Skin 0.09 protein_coding missense_variant MODERATE 121G>A Gly41Ser
M0104063 NNHKCOBJ_00037 29724 5 Skin 0.07 protein_coding missense_variant MODERATE 242G>C Ser81Thr
M0104064 NNHKCOBJ_00037 29731 5 Skin 0.07 protein_coding synonymous_variant LOW 249T>A Ala83Ala
M0104065 NNHKCOBJ_00037 29890 5 Skin 0.07 protein_coding synonymous_variant LOW 408A>G Thr136Thr
M0104066 NNHKCOBJ_00037 29923 5 Skin 0.07 protein_coding synonymous_variant LOW 441G>C Gly147Gly
M0104067 NNHKCOBJ_00037 29929 5 Skin 0.07 protein_coding synonymous_variant LOW 447C>T His149His
M0104068 NNHKCOBJ_00037 29932 5 Skin 0.07 protein_coding synonymous_variant LOW 450T>C Gly150Gly
M0104069 NNHKCOBJ_00037 29935 5 Skin 0.07 protein_coding synonymous_variant LOW 453T>C Ala151Ala
M0104070 NNHKCOBJ_00037 30232 4 Skin 0.06 protein_coding synonymous_variant LOW 750A>T Pro250Pro
M0104071 NNHKCOBJ_00037 30287 4 Skin 0.06 protein_coding missense_variant MODERATE 805C>T His269Tyr
M0104072 NNHKCOBJ_00038 30320 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -12G>T None
M0104073 NNHKCOBJ_00038 30331 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1C>T None
M0104074 NNHKCOBJ_00038 30628 3 Skin 0.04 protein_coding synonymous_variant LOW 297G>A Ser99Ser
M0104075 NNHKCOBJ_00038 30740 3 Skin 0.04 protein_coding missense_variant MODERATE 409A>G Thr137Ala
M0104076 NNHKCOBJ_00038 30783 3 Skin 0.04 protein_coding missense_variant MODERATE 452G>T Arg151Leu
M0104077 NNHKCOBJ_00038 30913 3 Skin 0.04 protein_coding synonymous_variant LOW 582G>T Ser194Ser
M0104078 NNHKCOBJ_00038 30916 3 Skin 0.04 protein_coding synonymous_variant LOW 585C>T Ile195Ile
M0104079 NNHKCOBJ_00038 31130 3 Skin 0.04 protein_coding missense_variant MODERATE 799C>A Gln267Lys
M0104080 NNHKCOBJ_00038 31213 3 Skin 0.04 protein_coding synonymous_variant LOW 882C>T Ala294Ala
M0104081 NNHKCOBJ_00038 31258 3 Skin 0.04 protein_coding synonymous_variant LOW 927C>T Thr309Thr
M0104082 NNHKCOBJ_00038 31267 3 Skin 0.04 protein_coding synonymous_variant LOW 936T>C Asp312Asp
M0104083 NNHKCOBJ_00038 31374 3 Skin 0.04 protein_coding missense_variant MODERATE 1043A>T Lys348Ile
M0104084 NNHKCOBJ_00038 31556 3 Skin 0.04 protein_coding missense_variant MODERATE 1225G>T Gly409Cys
M0104085 NNHKCOBJ_00038 31609 3 Skin 0.04 protein_coding synonymous_variant LOW 1278G>A Thr426Thr
M0104086 NNHKCOBJ_00040 34327 3 Skin 0.04 protein_coding missense_variant MODERATE 1267C>T Arg423Trp
M0104087 NNHKCOBJ_00040 34560 3 Skin 0.04 protein_coding missense_variant MODERATE 1500G>C Gln500His
M0104088 NNHKCOBJ_00024 17540 5 Skin 0.07 protein_coding synonymous_variant LOW 408G>C Gly136Gly
M0104089 NNHKCOBJ_00046 46311 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3210G>A None
M0104090 NNHKCOBJ_00046 46312 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3211C>G None
M0104091 NNHKCOBJ_00046 42028 12 Skin 0.18 protein_coding synonymous_variant LOW 1074G>A Gln358Gln
M0104092 NNHKCOBJ_00046 42164 14 Skin 0.21 protein_coding missense_variant MODERATE 938A>C Asn313Thr
M0104093 NNHKCOBJ_00046 42282 15 Skin 0.22 protein_coding missense_variant MODERATE 820G>A Gly274Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
NNHKCOBJ_00139 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] 100 1.1e-60 1 115 1.0000 1.0000 experiment
NNHKCOBJ_00150 Mercury (Hg) 96.7 9.7e-42 1 91 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
NNHKCOBJ_00136 ARO:3002330 100 7.85e-208 1 287 1.0000 1.0000 carbapenem GES beta-lactamase antibiotic inactivation
NNHKCOBJ_00137 ARO:3002676 100 7.29e-161 1 210 1.0000 1.0000 phenicol antibiotic chloramphenicol acetyltransferase (CAT) antibiotic inactivation
NNHKCOBJ_00138 ARO:3005354 100 7.63e-116 1 165 1.0000 1.0000 diaminopyrimidine antibiotic trimethoprim resistant dihydrofolate reductase dfr antibiotic target replacement
NNHKCOBJ_00139 ARO:3005010 100 2.01e-78 1 115 1.0000 1.0000 disinfecting agents and antiseptics major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
NNHKCOBJ_00140 ARO:3000410 100 2.94e-199 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
NNHKCOBJ_00135 PHI:9804 int 100 3e-14 1 37 0.1098 1.0000 rodents gastroenteritis integrase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NNHKCOBJ_00206 AWA04458.1|GH23 100 8.55e-143 1 201 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term