Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C831
  Reference Plasmid   NZ_CP069446.1
  Reference Plasmid Size   36124
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0184096 LNJODDNJ_00001 325 56 Gut 0.97 protein_coding synonymous_variant LOW 192T>C Ala64Ala
M0184097 LNJODDNJ_00001 328 56 Gut 0.97 protein_coding synonymous_variant LOW 189A>T Pro63Pro
M0184098 LNJODDNJ_00001 349 57 Gut 0.98 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0184099 LNJODDNJ_00001 411 57 Gut 0.98 protein_coding synonymous_variant LOW 106C>A Arg36Arg
M0184100 LNJODDNJ_00001 520 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4A>G None
M0184101 LNJODDNJ_00001 537 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -21C>T None
M0184102 LNJODDNJ_00001 544 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -28C>T None
M0184103 LNJODDNJ_00002 579 57 Gut 0.98 protein_coding synonymous_variant LOW 1296T>A Val432Val
M0184104 LNJODDNJ_00002 609 57 Gut 0.98 protein_coding synonymous_variant LOW 1266C>T Asn422Asn
M0184105 LNJODDNJ_00002 627 57 Gut 0.98 protein_coding synonymous_variant LOW 1248T>C Asn416Asn
M0184106 LNJODDNJ_00002 771 57 Gut 0.98 protein_coding synonymous_variant LOW 1104T>C Arg368Arg
M0184107 LNJODDNJ_00002 815 57 Gut 0.98 protein_coding synonymous_variant LOW 1060A>C Arg354Arg
M0184108 LNJODDNJ_00002 825 57 Gut 0.98 protein_coding synonymous_variant LOW 1050A>G Gln350Gln
M0184109 LNJODDNJ_00002 874 57 Gut 0.98 protein_coding missense_variant MODERATE 1001T>A Leu334Gln
M0184110 LNJODDNJ_00002 897 57 Gut 0.98 protein_coding synonymous_variant LOW 978G>A Gln326Gln
M0184111 LNJODDNJ_00002 921 57 Gut 0.98 protein_coding synonymous_variant LOW 954C>T Tyr318Tyr
M0184112 LNJODDNJ_00002 1002 58 Gut 1.00 protein_coding synonymous_variant LOW 873T>A Ala291Ala
M0184113 LNJODDNJ_00002 1025 57 Gut 0.98 protein_coding synonymous_variant LOW 850T>C Leu284Leu
M0184114 LNJODDNJ_00005 2693 58 Gut 1.00 protein_coding synonymous_variant LOW 1827A>T Val609Val
M0184115 LNJODDNJ_00005 2792 57 Gut 0.98 protein_coding synonymous_variant LOW 1728A>G Thr576Thr
M0184116 LNJODDNJ_00005 3215 57 Gut 0.98 protein_coding synonymous_variant LOW 1305A>C Gly435Gly
M0184117 LNJODDNJ_00005 3286 57 Gut 0.98 protein_coding synonymous_variant LOW 1234C>T Leu412Leu
M0184118 LNJODDNJ_00005 4211 58 Gut 1.00 protein_coding synonymous_variant LOW 309T>C Ala103Ala
M0184119 LNJODDNJ_00006 5179 58 Gut 1.00 protein_coding synonymous_variant LOW 375G>C Gly125Gly
M0184120 LNJODDNJ_00007 5846 57 Gut 0.98 protein_coding synonymous_variant LOW 915T>A Ser305Ser
M0184121 LNJODDNJ_00007 5894 58 Gut 1.00 protein_coding synonymous_variant LOW 867C>A Pro289Pro
M0184122 LNJODDNJ_00007 6296 57 Gut 0.98 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0184123 LNJODDNJ_00008 7579 57 Gut 0.98 protein_coding synonymous_variant LOW 108A>C Ile36Ile
M0184124 LNJODDNJ_00005 8499 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -3980C>T None
M0184125 LNJODDNJ_00005 8530 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4011A>T None
M0184126 LNJODDNJ_00005 8571 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4052T>C None
M0184127 LNJODDNJ_00011 10064 57 Gut 0.98 protein_coding synonymous_variant LOW 12A>C Ile4Ile
M0184128 LNJODDNJ_00012 10454 57 Gut 0.98 protein_coding synonymous_variant LOW 381T>C Cys127Cys
M0184129 LNJODDNJ_00013 11058 57 Gut 0.98 protein_coding synonymous_variant LOW 2541C>T Ser847Ser
M0184130 LNJODDNJ_00013 11541 57 Gut 0.98 protein_coding synonymous_variant LOW 2058G>A Gly686Gly
M0184131 LNJODDNJ_00013 13085 57 Gut 0.98 protein_coding missense_variant MODERATE 514G>T Ala172Ser
M0184132 LNJODDNJ_00015 14045 57 Gut 0.98 protein_coding missense_variant MODERATE 494T>A Ile165Lys
M0184133 LNJODDNJ_00012 15349 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4515C>T None
M0184134 LNJODDNJ_00012 15410 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4576A>G None
M0184135 LNJODDNJ_00012 15418 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4584A>G None
M0184136 LNJODDNJ_00012 15419 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4585G>A None
M0184137 LNJODDNJ_00012 15420 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4586T>C None
M0184138 LNJODDNJ_00012 15436 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4602C>T None
M0184139 LNJODDNJ_00012 15447 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4613T>G None
M0184140 LNJODDNJ_00012 15549 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4715T>A None
M0184141 LNJODDNJ_00012 15583 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4749G>T None
M0184142 LNJODDNJ_00017 15719 57 Gut 0.98 protein_coding synonymous_variant LOW 1032C>T Ser344Ser
M0184143 LNJODDNJ_00013 17331 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -3733A>G None
M0184144 LNJODDNJ_00013 17340 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -3742G>A None
M0184145 LNJODDNJ_00022 18224 57 Gut 0.98 protein_coding missense_variant MODERATE 83T>G Ile28Arg
M0184146 LNJODDNJ_00025 19001 57 Gut 0.98 protein_coding missense_variant MODERATE 221T>C Ile74Thr
M0184147 LNJODDNJ_00025 19054 57 Gut 0.98 protein_coding synonymous_variant LOW 168T>C Leu56Leu
M0184148 LNJODDNJ_00017 20396 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -3646T>C None
M0184149 LNJODDNJ_00017 20731 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -3981T>C None
M0184150 LNJODDNJ_00017 20972 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4222A>C None
M0184151 LNJODDNJ_00017 20981 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4231A>G None
M0184152 LNJODDNJ_00017 21018 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4268A>C None
M0184153 LNJODDNJ_00017 21127 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4377A>T None
M0184154 LNJODDNJ_00017 21243 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4493G>A None
M0184155 LNJODDNJ_00022 23151 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4845A>G None
M0184156 LNJODDNJ_00032 23393 57 Gut 0.98 protein_coding synonymous_variant LOW 393T>C Tyr131Tyr
M0184157 LNJODDNJ_00032 23645 57 Gut 0.98 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0184158 LNJODDNJ_00032 23690 57 Gut 0.98 protein_coding synonymous_variant LOW 96A>G Glu32Glu
M0184159 LNJODDNJ_00032 23703 57 Gut 0.98 protein_coding missense_variant MODERATE 83G>A Arg28Gln
M0184160 LNJODDNJ_00025 24139 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4918G>A None
M0184161 LNJODDNJ_00035 24606 57 Gut 0.98 protein_coding stop_lost&splice_region_variant HIGH 661T>C Ter221Glnext*?
M0184162 LNJODDNJ_00035 24844 57 Gut 0.98 protein_coding synonymous_variant LOW 423G>T Val141Val
M0184163 LNJODDNJ_00035 24856 57 Gut 0.98 protein_coding synonymous_variant LOW 411G>A Leu137Leu
M0184164 LNJODDNJ_00032 25289 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -1504A>G None
M0184165 LNJODDNJ_00032 25308 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -1523A>G None
M0184166 LNJODDNJ_00032 25315 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1530C>T None
M0184167 LNJODDNJ_00032 25328 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -1543T>C None
M0184168 LNJODDNJ_00032 25346 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -1561C>T None
M0184169 LNJODDNJ_00032 25377 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -1592C>T None
M0184170 LNJODDNJ_00032 25461 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1676A>C None
M0184171 LNJODDNJ_00032 25483 58 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1698C>T None
M0184172 LNJODDNJ_00036 25917 58 Gut 1.00 protein_coding synonymous_variant LOW 271T>C Leu91Leu
M0184173 LNJODDNJ_00032 26525 56 Gut 0.97 protein_coding upstream_gene_variant MODIFIER -2740A>C None
M0184174 LNJODDNJ_00038 28117 57 Gut 0.98 protein_coding synonymous_variant LOW 555G>A Leu185Leu
M0184175 LNJODDNJ_00038 28258 57 Gut 0.98 protein_coding synonymous_variant LOW 696A>C Leu232Leu
M0184176 LNJODDNJ_00038 28286 57 Gut 0.98 protein_coding synonymous_variant LOW 724C>A Arg242Arg
M0184177 LNJODDNJ_00039 28953 57 Gut 0.98 protein_coding missense_variant MODERATE 423A>G Ile141Met
M0184178 LNJODDNJ_00039 29193 58 Gut 1.00 protein_coding missense_variant MODERATE 663G>A Met221Ile
M0184179 LNJODDNJ_00039 29388 57 Gut 0.98 protein_coding synonymous_variant LOW 858T>C His286His
M0184180 LNJODDNJ_00039 29757 57 Gut 0.98 protein_coding synonymous_variant LOW 1227G>A Gly409Gly
M0184181 LNJODDNJ_00039 29761 57 Gut 0.98 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0184182 LNJODDNJ_00039 29772 57 Gut 0.98 protein_coding synonymous_variant LOW 1242G>A Thr414Thr
M0184183 LNJODDNJ_00039 29816 57 Gut 0.98 protein_coding missense_variant MODERATE 1286A>T Asn429Ile
M0184184 LNJODDNJ_00035 29973 57 Gut 0.98 protein_coding upstream_gene_variant MODIFIER -4707T>G None
M0184185 LNJODDNJ_00041 30466 58 Gut 1.00 protein_coding synonymous_variant LOW 342A>G Thr114Thr
M0184186 LNJODDNJ_00041 30720 57 Gut 0.98 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0184187 LNJODDNJ_00041 30721 57 Gut 0.98 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0184188 LNJODDNJ_00042 30898 58 Gut 1.00 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0184189 LNJODDNJ_00042 30940 57 Gut 0.98 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0184190 LNJODDNJ_00043 31042 58 Gut 1.00 protein_coding missense_variant MODERATE 2138C>T Ala713Val
M0184191 LNJODDNJ_00043 31108 58 Gut 1.00 protein_coding missense_variant MODERATE 2072A>G Asn691Ser
M0184192 LNJODDNJ_00043 31192 57 Gut 0.98 protein_coding missense_variant MODERATE 1988C>T Ser663Phe
M0184193 LNJODDNJ_00043 31467 58 Gut 1.00 protein_coding synonymous_variant LOW 1713A>G Ala571Ala
M0184194 LNJODDNJ_00043 31767 57 Gut 0.98 protein_coding synonymous_variant LOW 1413G>T Leu471Leu
M0184195 LNJODDNJ_00043 31903 57 Gut 0.98 protein_coding missense_variant MODERATE 1277G>A Cys426Tyr
M0184196 LNJODDNJ_00043 32114 58 Gut 1.00 protein_coding missense_variant MODERATE 1066C>T Pro356Ser
M0184197 LNJODDNJ_00043 32482 58 Gut 1.00 protein_coding missense_variant MODERATE 698T>G Met233Arg
M0184198 LNJODDNJ_00043 32508 57 Gut 0.98 protein_coding synonymous_variant LOW 672T>C Val224Val
M0184199 LNJODDNJ_00043 32586 57 Gut 0.98 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0184200 LNJODDNJ_00043 32589 58 Gut 1.00 protein_coding synonymous_variant LOW 591A>T Thr197Thr
M0184201 LNJODDNJ_00043 32616 57 Gut 0.98 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0184202 LNJODDNJ_00043 32640 57 Gut 0.98 protein_coding synonymous_variant LOW 540T>G Pro180Pro
M0184203 LNJODDNJ_00043 32670 57 Gut 0.98 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0184204 LNJODDNJ_00043 32685 57 Gut 0.98 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0184205 LNJODDNJ_00043 32754 57 Gut 0.98 protein_coding synonymous_variant LOW 426G>A Ala142Ala
M0184206 LNJODDNJ_00043 32817 57 Gut 0.98 protein_coding synonymous_variant LOW 363C>A Gly121Gly
M0184207 LNJODDNJ_00043 32913 57 Gut 0.98 protein_coding synonymous_variant LOW 267A>G Glu89Glu
M0184208 LNJODDNJ_00043 32942 57 Gut 0.98 protein_coding missense_variant MODERATE 238G>T Ala80Ser
M0184209 LNJODDNJ_00043 33036 57 Gut 0.98 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0184210 LNJODDNJ_00043 33162 57 Gut 0.98 protein_coding synonymous_variant LOW 18T>A Ala6Ala
M0184211 LNJODDNJ_00044 33208 55 Gut 0.95 protein_coding missense_variant MODERATE 552A>C Lys184Asn
M0184212 LNJODDNJ_00044 33211 56 Gut 0.97 protein_coding synonymous_variant LOW 549C>A Ala183Ala
M0184213 LNJODDNJ_00044 33220 55 Gut 0.95 protein_coding synonymous_variant LOW 540C>T Ile180Ile
M0184214 LNJODDNJ_00044 33238 56 Gut 0.97 protein_coding synonymous_variant LOW 522G>A Val174Val
M0184215 LNJODDNJ_00044 33284 56 Gut 0.97 protein_coding missense_variant MODERATE 476A>G His159Arg
M0184216 LNJODDNJ_00044 33331 55 Gut 0.95 protein_coding synonymous_variant LOW 429T>G Thr143Thr
M0184217 LNJODDNJ_00044 33337 55 Gut 0.95 protein_coding synonymous_variant LOW 423T>C Ile141Ile
M0184218 LNJODDNJ_00044 33344 56 Gut 0.97 protein_coding stop_gained HIGH 416G>A Trp139*
M0184219 LNJODDNJ_00044 33345 56 Gut 0.97 protein_coding missense_variant MODERATE 415T>C Trp139Arg
M0184220 LNJODDNJ_00044 33346 56 Gut 0.97 protein_coding missense_variant MODERATE 414G>C Glu138Asp
M0184221 LNJODDNJ_00044 33373 55 Gut 0.95 protein_coding synonymous_variant LOW 387C>T Ala129Ala
M0184222 LNJODDNJ_00044 33388 55 Gut 0.95 protein_coding synonymous_variant LOW 372G>A Ser124Ser
M0184223 LNJODDNJ_00044 33409 55 Gut 0.95 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0184224 LNJODDNJ_00044 33430 55 Gut 0.95 protein_coding synonymous_variant LOW 330G>A Ala110Ala
M0184225 LNJODDNJ_00044 33433 55 Gut 0.95 protein_coding synonymous_variant LOW 327A>C Ala109Ala
M0184226 LNJODDNJ_00044 33457 56 Gut 0.97 protein_coding synonymous_variant LOW 303T>A Gly101Gly
M0184227 LNJODDNJ_00044 33471 56 Gut 0.97 protein_coding synonymous_variant LOW 289C>T Leu97Leu
M0184228 LNJODDNJ_00044 33478 55 Gut 0.95 protein_coding synonymous_variant LOW 282A>C Thr94Thr
M0184229 LNJODDNJ_00044 33613 55 Gut 0.95 protein_coding synonymous_variant LOW 147C>T Gly49Gly
M0184230 LNJODDNJ_00044 33619 54 Gut 0.93 protein_coding synonymous_variant LOW 141T>C Cys47Cys
M0184231 LNJODDNJ_00044 33638 54 Gut 0.93 protein_coding missense_variant MODERATE 122C>T Ala41Val
M0184232 LNJODDNJ_00044 33724 55 Gut 0.95 protein_coding missense_variant MODERATE 36T>A Asn12Lys
M0184233 LNJODDNJ_00044 33733 54 Gut 0.93 protein_coding missense_variant MODERATE 27T>G Phe9Leu
M0184234 LNJODDNJ_00044 33735 54 Gut 0.93 protein_coding missense_variant MODERATE 25T>C Phe9Leu
M0184235 LNJODDNJ_00044 33736 54 Gut 0.93 protein_coding synonymous_variant LOW 24A>G Gly8Gly
M0184236 LNJODDNJ_00044 33737 54 Gut 0.93 protein_coding missense_variant MODERATE 23G>C Gly8Ala
M0184237 LNJODDNJ_00044 33744 54 Gut 0.93 protein_coding missense_variant MODERATE 16T>G Phe6Val
M0184238 LNJODDNJ_00044 33745 54 Gut 0.93 protein_coding synonymous_variant LOW 15G>A Leu5Leu
M0184239 LNJODDNJ_00045 33805 54 Gut 0.93 protein_coding missense_variant MODERATE 1221G>T Lys407Asn
M0184240 LNJODDNJ_00045 33817 55 Gut 0.95 protein_coding synonymous_variant LOW 1209A>G Glu403Glu
M0184241 LNJODDNJ_00045 33829 55 Gut 0.95 protein_coding synonymous_variant LOW 1197A>G Glu399Glu
M0184242 LNJODDNJ_00045 33856 55 Gut 0.95 protein_coding synonymous_variant LOW 1170T>C Ser390Ser
M0184243 LNJODDNJ_00045 33907 55 Gut 0.95 protein_coding synonymous_variant LOW 1119T>G Val373Val
M0184244 LNJODDNJ_00045 33931 54 Gut 0.93 protein_coding synonymous_variant LOW 1095A>C Arg365Arg
M0184245 LNJODDNJ_00045 34258 58 Gut 1.00 protein_coding synonymous_variant LOW 768C>T Ala256Ala
M0184246 LNJODDNJ_00045 34300 58 Gut 1.00 protein_coding synonymous_variant LOW 726T>C Cys242Cys
M0184247 LNJODDNJ_00045 34312 58 Gut 1.00 protein_coding synonymous_variant LOW 714C>T Phe238Phe
M0184248 LNJODDNJ_00045 34321 57 Gut 0.98 protein_coding synonymous_variant LOW 705C>T Asp235Asp
M0184249 LNJODDNJ_00045 34375 58 Gut 1.00 protein_coding synonymous_variant LOW 651T>C Ile217Ile
M0184250 LNJODDNJ_00045 34387 58 Gut 1.00 protein_coding synonymous_variant LOW 639T>C Gly213Gly
M0184251 LNJODDNJ_00045 34393 58 Gut 1.00 protein_coding synonymous_variant LOW 633G>A Gly211Gly
M0184252 LNJODDNJ_00045 34396 58 Gut 1.00 protein_coding synonymous_variant LOW 630C>A Pro210Pro
M0184253 LNJODDNJ_00045 34399 58 Gut 1.00 protein_coding synonymous_variant LOW 627T>C Pro209Pro
M0184254 LNJODDNJ_00045 34408 57 Gut 0.98 protein_coding synonymous_variant LOW 618T>C Phe206Phe
M0184255 LNJODDNJ_00045 34414 58 Gut 1.00 protein_coding synonymous_variant LOW 612C>G Val204Val
M0184256 LNJODDNJ_00045 34441 58 Gut 1.00 protein_coding synonymous_variant LOW 585A>G Arg195Arg
M0184257 LNJODDNJ_00045 34489 58 Gut 1.00 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0184258 LNJODDNJ_00045 34513 58 Gut 1.00 protein_coding synonymous_variant LOW 513C>A Ser171Ser
M0184259 LNJODDNJ_00045 34516 58 Gut 1.00 protein_coding synonymous_variant LOW 510T>C Phe170Phe
M0184260 LNJODDNJ_00045 34663 58 Gut 1.00 protein_coding missense_variant MODERATE 363C>G Ile121Met
M0184261 LNJODDNJ_00045 34666 58 Gut 1.00 protein_coding synonymous_variant LOW 360C>T Ser120Ser
M0184262 LNJODDNJ_00045 34826 58 Gut 1.00 protein_coding missense_variant MODERATE 200A>G Asn67Ser
M0184263 LNJODDNJ_00045 34842 57 Gut 0.98 protein_coding missense_variant MODERATE 184G>A Val62Ile
M0184264 LNJODDNJ_00045 34891 57 Gut 0.98 protein_coding synonymous_variant LOW 135C>T Asn45Asn
M0184265 LNJODDNJ_00045 34900 57 Gut 0.98 protein_coding synonymous_variant LOW 126C>T Asn42Asn
M0184266 LNJODDNJ_00045 35022 58 Gut 1.00 protein_coding missense_variant MODERATE 4A>G Ser2Gly
M0184267 LNJODDNJ_00046 35149 58 Gut 1.00 protein_coding synonymous_variant LOW 450A>T Thr150Thr
M0184268 LNJODDNJ_00046 35150 58 Gut 1.00 protein_coding missense_variant MODERATE 449C>G Thr150Arg
M0184269 LNJODDNJ_00046 35152 58 Gut 1.00 protein_coding synonymous_variant LOW 447T>C Asp149Asp
M0184270 LNJODDNJ_00046 35167 57 Gut 0.98 protein_coding synonymous_variant LOW 432T>A Arg144Arg
M0184271 LNJODDNJ_00046 35170 58 Gut 1.00 protein_coding synonymous_variant LOW 429G>A Lys143Lys
M0184272 LNJODDNJ_00046 35196 58 Gut 1.00 protein_coding synonymous_variant LOW 403T>C Leu135Leu
M0184273 LNJODDNJ_00046 35209 58 Gut 1.00 protein_coding synonymous_variant LOW 390A>G Lys130Lys
M0184274 LNJODDNJ_00046 35211 58 Gut 1.00 protein_coding missense_variant MODERATE 388A>G Lys130Glu
M0184275 LNJODDNJ_00046 35215 58 Gut 1.00 protein_coding synonymous_variant LOW 384A>G Thr128Thr
M0184276 LNJODDNJ_00046 35217 58 Gut 1.00 protein_coding missense_variant MODERATE 382A>G Thr128Ala
M0184277 LNJODDNJ_00046 35245 58 Gut 1.00 protein_coding synonymous_variant LOW 354C>T Gly118Gly
M0184278 LNJODDNJ_00046 35253 57 Gut 0.98 protein_coding missense_variant MODERATE 346C>A Gln116Lys
M0184279 LNJODDNJ_00046 35275 58 Gut 1.00 protein_coding synonymous_variant LOW 324G>A Thr108Thr
M0184280 LNJODDNJ_00046 35324 57 Gut 0.98 protein_coding missense_variant MODERATE 275C>G Thr92Arg
M0184281 LNJODDNJ_00046 35335 57 Gut 0.98 protein_coding synonymous_variant LOW 264T>G Ser88Ser
M0184282 LNJODDNJ_00046 35337 57 Gut 0.98 protein_coding missense_variant MODERATE 262T>A Ser88Thr
M0184283 LNJODDNJ_00046 35338 57 Gut 0.98 protein_coding synonymous_variant LOW 261C>G Val87Val
M0184284 LNJODDNJ_00046 35341 57 Gut 0.98 protein_coding synonymous_variant LOW 258C>T Thr86Thr
M0184285 LNJODDNJ_00046 35347 57 Gut 0.98 protein_coding synonymous_variant LOW 252A>T Ser84Ser
M0184286 LNJODDNJ_00046 35349 57 Gut 0.98 protein_coding missense_variant MODERATE 250T>C Ser84Pro
M0184287 LNJODDNJ_00046 35350 57 Gut 0.98 protein_coding synonymous_variant LOW 249A>G Gln83Gln
M0184288 LNJODDNJ_00046 35354 57 Gut 0.98 protein_coding missense_variant MODERATE 245G>C Gly82Ala
M0184289 LNJODDNJ_00046 35359 57 Gut 0.98 protein_coding synonymous_variant LOW 240C>T Leu80Leu
M0184290 LNJODDNJ_00035 25018 11 Gut 0.19 protein_coding synonymous_variant LOW 249C>T Leu83Leu
M0184291 LNJODDNJ_00030 22375 4 Gut 0.07 protein_coding missense_variant MODERATE 178G>A Val60Ile
M0184292 LNJODDNJ_00013 12680 6 Gut 0.10 protein_coding missense_variant MODERATE 919C>T Pro307Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LNJODDNJ_00015 AWH59259.1|GH23 99.5 2.16e-152 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term